
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   33 (  164),  selected   33 , name T0323TS102_4-D1
# Molecule2: number of CA atoms  101 (  777),  selected  101 , name T0323_D1.pdb
# PARAMETERS: T0323TS102_4-D1.T0323_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    T       6      M       1           -
LGA    -       -      R       2           -
LGA    -       -      Y       3           -
LGA    -       -      F       4           -
LGA    -       -      S       5           -
LGA    -       -      T       6           -
LGA    -       -      D       7           -
LGA    -       -      S       8           -
LGA    -       -      P       9           -
LGA    -       -      E      10           -
LGA    -       -      V      11           -
LGA    -       -      K      12           -
LGA    -       -      T      13           -
LGA    -       -      I      14           -
LGA    -       -      V      15           -
LGA    -       -      A      16           -
LGA    -       -      Q      17           -
LGA    -       -      D      18           -
LGA    R      20      S      19           #
LGA    L      21      R      20          3.351
LGA    -       -      L      21           -
LGA    -       -      F      22           -
LGA    F      22      Q      23          2.220
LGA    Q      23      F      24          1.840
LGA    F      24      I      25          3.361
LGA    I      25      E      26          3.036
LGA    E      26      I      27          3.320
LGA    I      27      A      28          3.967
LGA    A      28      G      29          4.893
LGA    G      29      E      30          2.579
LGA    E      30      -       -           -
LGA    V      31      V      31          0.905
LGA    Q      32      Q      32          2.869
LGA    L      33      L      33           #
LGA    -       -      L     150           -
LGA    -       -      D     151           -
LGA    -       -      V     152           -
LGA    L     150      L     153          0.696
LGA    D     151      S     154          1.864
LGA    -       -      V     155           -
LGA    -       -      G     156           -
LGA    V     152      D     157           #
LGA    L     153      V     158           -
LGA    -       -      G     159           -
LGA    S     154      L     160          0.765
LGA    V     155      Q     161          1.049
LGA    Y     196      R     162          1.771
LGA    L     197      G     163          1.568
LGA    W     198      A     164          0.934
LGA    R     209      K     165          0.875
LGA    S     210      W     166          0.859
LGA    L     211      L     167          0.838
LGA    E     212      Y     168          0.851
LGA    E     213      G     169          2.899
LGA    -       -      N     170           -
LGA    -       -      G     171           -
LGA    -       -      E     172           -
LGA    -       -      G     173           -
LGA    -       -      D     174           -
LGA    -       -      G     175           -
LGA    -       -      K     176           -
LGA    -       -      K     177           -
LGA    -       -      L     178           -
LGA    -       -      L     179           -
LGA    -       -      I     180           -
LGA    -       -      Y     181           -
LGA    -       -      H     182           -
LGA    -       -      G     183           -
LGA    -       -      K     184           -
LGA    -       -      A     185           -
LGA    -       -      W     186           -
LGA    -       -      A     187           -
LGA    -       -      P     188           -
LGA    -       -      Y     189           -
LGA    -       -      E     190           -
LGA    -       -      T     191           -
LGA    -       -      V     192           -
LGA    -       -      A     193           -
LGA    -       -      C     194           -
LGA    -       -      L     195           -
LGA    -       -      Y     196           -
LGA    -       -      L     197           -
LGA    -       -      W     198           -
LGA    -       -      K     199           -
LGA    -       -      A     200           -
LGA    -       -      A     201           -
LGA    -       -      G     202           -
LGA    -       -      T     203           -
LGA    -       -      F     204           -
LGA    -       -      A     205           -
LGA    -       -      E     206           -
LGA    -       -      E     207           -
LGA    -       -      Y     208           -
LGA    -       -      R     209           -
LGA    -       -      S     210           -
LGA    L     214      L     211          3.768
LGA    L     215      E     212           #
LGA    H     216      E     213           -
LGA    H     217      L     214           -
LGA    -       -      L     215           -
LGA    -       -      H     216           -
LGA    -       -      H     217           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   33  101    5.0     24    2.45    20.83     17.711     0.941

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.812382 * X  +   0.048959 * Y  +   0.581067 * Z  +  49.275696
  Y_new =   0.583061 * X  +   0.053312 * Y  +   0.810677 * Z  + -30.168377
  Z_new =   0.008712 * X  +   0.997377 * Y  +  -0.071856 * Z  + -36.736839 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.642717   -1.498876  [ DEG:    94.1208    -85.8792 ]
  Theta =  -0.008712   -3.132880  [ DEG:    -0.4992   -179.5008 ]
  Phi   =   2.519074   -0.622518  [ DEG:   144.3323    -35.6677 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0323TS102_4-D1                               
REMARK     2: T0323_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0323TS102_4-D1.T0323_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   33  101   5.0   24   2.45   20.83  17.711
REMARK  ---------------------------------------------------------- 
MOLECULE T0323TS102_4-D1
PFRMAT TS
TARGET T0323
MODEL 4
PARENT 2es9_A
ATOM      1  N   THR     6      23.188  28.485  30.927  1.00  1.00
ATOM      2  CA  THR     6      23.851  29.813  30.817  1.00  1.00
ATOM      3  C   THR     6      23.672  30.427  29.421  1.00  1.00
ATOM      4  O   THR     6      23.305  29.737  28.468  1.00  1.00
ATOM      5  CB  THR     6      25.361  29.719  31.165  1.00  1.00
ATOM      6  N   ARG    20      23.944  31.726  29.311  1.00  1.00
ATOM      7  CA  ARG    20      23.820  32.451  28.046  1.00  1.00
ATOM      8  C   ARG    20      24.707  31.873  26.948  1.00  1.00
ATOM      9  O   ARG    20      24.278  31.748  25.801  1.00  1.00
ATOM     10  CB  ARG    20      24.134  33.923  28.253  1.00  1.00
ATOM     11  N   LEU    21      25.933  31.503  27.305  1.00  1.00
ATOM     12  CA  LEU    21      26.877  30.927  26.347  1.00  1.00
ATOM     13  C   LEU    21      26.379  29.581  25.810  1.00  1.00
ATOM     14  O   LEU    21      26.476  29.310  24.608  1.00  1.00
ATOM     15  CB  LEU    21      28.283  30.762  26.982  1.00  1.00
ATOM     16  N   PHE    22      25.827  28.750  26.693  1.00  1.00
ATOM     17  CA  PHE    22      25.308  27.445  26.290  1.00  1.00
ATOM     18  C   PHE    22      24.124  27.611  25.342  1.00  1.00
ATOM     19  O   PHE    22      24.036  26.923  24.330  1.00  1.00
ATOM     20  CB  PHE    22      24.868  26.631  27.510  1.00  1.00
ATOM     21  N   GLN    23      23.220  28.535  25.670  1.00  1.00
ATOM     22  CA  GLN    23      22.050  28.784  24.838  1.00  1.00
ATOM     23  C   GLN    23      22.481  29.336  23.483  1.00  1.00
ATOM     24  O   GLN    23      21.909  28.985  22.456  1.00  1.00
ATOM     25  CB  GLN    23      21.080  29.746  25.527  1.00  1.00
ATOM     26  N   PHE    24      23.507  30.182  23.488  1.00  1.00
ATOM     27  CA  PHE    24      24.036  30.763  22.260  1.00  1.00
ATOM     28  C   PHE    24      24.523  29.640  21.352  1.00  1.00
ATOM     29  O   PHE    24      24.222  29.625  20.158  1.00  1.00
ATOM     30  CB  PHE    24      25.175  31.709  22.584  1.00  1.00
ATOM     31  N   ILE    25      25.255  28.692  21.930  1.00  1.00
ATOM     32  CA  ILE    25      25.780  27.553  21.175  1.00  1.00
ATOM     33  C   ILE    25      24.652  26.657  20.669  1.00  1.00
ATOM     34  O   ILE    25      24.806  25.979  19.656  1.00  1.00
ATOM     35  CB  ILE    25      26.751  26.739  22.031  1.00  1.00
ATOM     36  N   GLU    26      23.539  26.629  21.396  1.00  1.00
ATOM     37  CA  GLU    26      22.378  25.841  20.989  1.00  1.00
ATOM     38  C   GLU    26      21.808  26.453  19.714  1.00  1.00
ATOM     39  O   GLU    26      21.596  25.753  18.725  1.00  1.00
ATOM     40  CB  GLU    26      21.300  25.829  22.078  1.00  1.00
ATOM     41  N   ILE    27      21.583  27.767  19.740  1.00  1.00
ATOM     42  CA  ILE    27      21.051  28.488  18.584  1.00  1.00
ATOM     43  C   ILE    27      21.871  28.177  17.338  1.00  1.00
ATOM     44  O   ILE    27      21.324  27.865  16.282  1.00  1.00
ATOM     45  CB  ILE    27      21.094  30.007  18.815  1.00  1.00
ATOM     46  N   ALA    28      23.190  28.275  17.469  1.00  1.00
ATOM     47  CA  ALA    28      24.094  28.013  16.358  1.00  1.00
ATOM     48  C   ALA    28      23.973  26.558  15.908  1.00  1.00
ATOM     49  O   ALA    28      24.043  26.258  14.712  1.00  1.00
ATOM     50  CB  ALA    28      25.554  28.318  16.759  1.00  1.00
ATOM     51  N   GLY    29      23.773  25.671  16.878  1.00  1.00
ATOM     52  CA  GLY    29      23.636  24.253  16.593  1.00  1.00
ATOM     53  C   GLY    29      22.351  23.920  15.857  1.00  1.00
ATOM     54  O   GLY    29      22.251  22.871  15.220  1.00  1.00
ATOM     55  N   GLU    30      21.361  24.807  15.963  1.00  1.00
ATOM     56  CA  GLU    30      20.092  24.599  15.289  1.00  1.00
ATOM     57  C   GLU    30      20.089  25.127  13.863  1.00  1.00
ATOM     58  O   GLU    30      19.074  25.052  13.169  1.00  1.00
ATOM     59  CB  GLU    30      19.009  25.358  16.076  1.00  1.00
ATOM     60  N   VAL    31      21.217  25.695  13.440  1.00  1.00
ATOM     61  CA  VAL    31      21.364  26.243  12.093  1.00  1.00
ATOM     62  C   VAL    31      21.793  25.125  11.143  1.00  1.00
ATOM     63  O   VAL    31      21.864  23.964  11.543  1.00  1.00
ATOM     64  CB  VAL    31      22.409  27.362  12.100  1.00  1.00
ATOM     65  N   GLN    32      22.047  25.454   9.884  1.00  1.00
ATOM     66  CA  GLN    32      22.476  24.430   8.941  1.00  1.00
ATOM     67  C   GLN    32      23.976  24.197   9.127  1.00  1.00
ATOM     68  O   GLN    32      24.805  24.600   8.302  1.00  1.00
ATOM     69  CB  GLN    32      22.159  24.827   7.499  1.00  1.00
ATOM     70  N   LEU    33      24.295  23.548  10.240  1.00  1.00
ATOM     71  CA  LEU    33      25.663  23.231  10.624  1.00  1.00
ATOM     72  C   LEU    33      26.385  22.347   9.607  1.00  1.00
ATOM     73  O   LEU    33      27.615  22.339   9.538  1.00  1.00
ATOM     74  CB  LEU    33      25.680  22.539  12.000  1.00  1.00
ATOM    400  N   LEU   150      21.374  42.397   9.807  1.00  1.00
ATOM    401  CA  LEU   150      21.315  42.182  11.257  1.00  1.00
ATOM    402  C   LEU   150      19.971  41.797  11.848  1.00  1.00
ATOM    403  O   LEU   150      19.930  41.148  12.879  1.00  1.00
ATOM    404  CB  LEU   150      21.835  43.502  11.830  1.00  1.00
ATOM    405  N   ASP   151      18.880  42.145  11.177  1.00  1.00
ATOM    406  CA  ASP   151      17.554  41.815  11.682  1.00  1.00
ATOM    407  C   ASP   151      17.289  40.320  11.882  1.00  1.00
ATOM    408  O   ASP   151      16.375  39.961  12.610  1.00  1.00
ATOM    409  CB  ASP   151      16.470  42.395  10.764  1.00  1.00
ATOM    410  N   VAL   152      18.054  39.457  11.215  1.00  1.00
ATOM    411  CA  VAL   152      17.867  38.011  11.347  1.00  1.00
ATOM    412  C   VAL   152      18.116  37.521  12.765  1.00  1.00
ATOM    413  O   VAL   152      17.630  36.463  13.159  1.00  1.00
ATOM    414  CB  VAL   152      18.711  37.250  10.316  1.00  1.00
ATOM    415  N   LEU   153      18.887  38.288  13.522  1.00  1.00
ATOM    416  CA  LEU   153      19.153  37.977  14.923  1.00  1.00
ATOM    417  C   LEU   153      17.930  38.632  15.567  1.00  1.00
ATOM    418  O   LEU   153      17.898  39.841  15.768  1.00  1.00
ATOM    419  CB  LEU   153      20.445  38.666  15.367  1.00  1.00
ATOM    420  N   SER   154      16.904  37.828  15.807  1.00  1.00
ATOM    421  CA  SER   154      15.636  38.319  16.341  1.00  1.00
ATOM    422  C   SER   154      15.630  38.912  17.740  1.00  1.00
ATOM    423  O   SER   154      16.506  38.642  18.566  1.00  1.00
ATOM    424  CB  SER   154      14.571  37.225  16.264  1.00  1.00
ATOM    425  N   VAL   155      14.596  39.703  18.008  1.00  1.00
ATOM    426  CA  VAL   155      14.441  40.322  19.314  1.00  1.00
ATOM    427  C   VAL   155      14.209  39.231  20.353  1.00  1.00
ATOM    428  O   VAL   155      14.684  39.325  21.488  1.00  1.00
ATOM    429  CB  VAL   155      13.301  41.352  19.298  1.00  1.00
ATOM    430  N   TYR   196      13.542  38.157  19.935  1.00  1.00
ATOM    431  CA  TYR   196      13.279  37.033  20.816  1.00  1.00
ATOM    432  C   TYR   196      14.611  36.466  21.314  1.00  1.00
ATOM    433  O   TYR   196      14.843  36.359  22.527  1.00  1.00
ATOM    434  CB  TYR   196      12.505  35.957  20.070  1.00  1.00
ATOM    435  N   LEU   197      15.491  36.127  20.372  1.00  1.00
ATOM    436  CA  LEU   197      16.808  35.584  20.714  1.00  1.00
ATOM    437  C   LEU   197      17.593  36.543  21.597  1.00  1.00
ATOM    438  O   LEU   197      18.177  36.142  22.603  1.00  1.00
ATOM    439  CB  LEU   197      17.635  35.322  19.458  1.00  1.00
ATOM    440  N   TRP   198      17.610  37.810  21.205  1.00  1.00
ATOM    441  CA  TRP   198      18.335  38.827  21.954  1.00  1.00
ATOM    442  C   TRP   198      17.842  38.967  23.399  1.00  1.00
ATOM    443  O   TRP   198      18.621  38.868  24.344  1.00  1.00
ATOM    444  CB  TRP   198      18.245  40.163  21.221  1.00  1.00
ATOM    445  N   ARG   209      16.544  39.196  23.558  1.00  1.00
ATOM    446  CA  ARG   209      15.948  39.344  24.879  1.00  1.00
ATOM    447  C   ARG   209      16.105  38.080  25.710  1.00  1.00
ATOM    448  O   ARG   209      16.219  38.151  26.930  1.00  1.00
ATOM    449  CB  ARG   209      14.474  39.728  24.755  1.00  1.00
ATOM    450  N   SER   210      16.131  36.920  25.056  1.00  1.00
ATOM    451  CA  SER   210      16.315  35.667  25.780  1.00  1.00
ATOM    452  C   SER   210      17.726  35.606  26.366  1.00  1.00
ATOM    453  O   SER   210      17.912  35.255  27.537  1.00  1.00
ATOM    454  CB  SER   210      16.076  34.461  24.866  1.00  1.00
ATOM    455  N   LEU   211      18.710  35.978  25.552  1.00  1.00
ATOM    456  CA  LEU   211      20.106  35.978  25.978  1.00  1.00
ATOM    457  C   LEU   211      20.349  37.038  27.046  1.00  1.00
ATOM    458  O   LEU   211      21.040  36.779  28.026  1.00  1.00
ATOM    459  CB  LEU   211      21.035  36.193  24.779  1.00  1.00
ATOM    460  N   GLU   212      19.760  38.217  26.859  1.00  1.00
ATOM    461  CA  GLU   212      19.887  39.308  27.813  1.00  1.00
ATOM    462  C   GLU   212      19.370  38.837  29.172  1.00  1.00
ATOM    463  O   GLU   212      20.011  39.051  30.200  1.00  1.00
ATOM    464  CB  GLU   212      19.077  40.515  27.340  1.00  1.00
ATOM    465  N   GLU   213      18.240  38.138  29.140  1.00  1.00
ATOM    466  CA  GLU   213      17.599  37.604  30.333  1.00  1.00
ATOM    467  C   GLU   213      18.490  36.612  31.075  1.00  1.00
ATOM    468  O   GLU   213      18.614  36.689  32.295  1.00  1.00
ATOM    469  CB  GLU   213      16.275  36.943  29.938  1.00  1.00
ATOM    470  N   LEU   214      19.101  35.685  30.339  1.00  1.00
ATOM    471  CA  LEU   214      19.988  34.680  30.922  1.00  1.00
ATOM    472  C   LEU   214      21.249  35.305  31.529  1.00  1.00
ATOM    473  O   LEU   214      21.719  34.870  32.579  1.00  1.00
ATOM    474  CB  LEU   214      20.385  33.638  29.871  1.00  1.00
ATOM    475  N   LEU   215      21.555  38.427  32.717  1.00  1.00
ATOM    476  CA  LEU   215      21.147  39.161  33.915  1.00  1.00
ATOM    477  C   LEU   215      20.830  38.271  35.116  1.00  1.00
ATOM    478  O   LEU   215      21.072  38.665  36.258  1.00  1.00
ATOM    479  CB  LEU   215      19.960  40.090  33.621  1.00  1.00
ATOM    480  N   HIS   216      20.320  37.070  34.857  1.00  1.00
ATOM    481  CA  HIS   216      19.980  36.138  35.926  1.00  1.00
ATOM    482  C   HIS   216      21.227  35.480  36.526  1.00  1.00
ATOM    483  O   HIS   216      21.128  34.572  37.351  1.00  1.00
ATOM    484  CB  HIS   216      18.998  35.083  35.409  1.00  1.00
ATOM    485  N   HIS   217      22.400  35.950  36.103  1.00  1.00
ATOM    486  CA  HIS   217      23.677  35.436  36.596  1.00  1.00
ATOM    487  C   HIS   217      24.506  36.536  37.263  1.00  1.00
ATOM    488  O   HIS   217      24.796  36.396  38.469  1.00  1.00
ATOM    489  CB  HIS   217      24.479  34.798  35.457  1.00  1.00
TER
END
