
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   68 (   68),  selected   68 , name T0348TS599_5
# Molecule2: number of CA atoms   61 (  465),  selected   61 , name T0348.pdb
# PARAMETERS: T0348TS599_5.T0348.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      D       2           -
LGA    D       2      A       3           -
LGA    A       3      K       4           -
LGA    K       4      F       5           -
LGA    F       5      L       6           -
LGA    L       6      E       7           -
LGA    E       7      I       8          4.507
LGA    I       8      L       9          3.549
LGA    L       9      -       -           -
LGA    V      10      V      10          0.893
LGA    C      11      C      11          1.106
LGA    P      12      P      12          0.480
LGA    L      13      L      13          0.893
LGA    C      14      C      14          1.019
LGA    K      15      K      15          0.495
LGA    G      16      G      16          0.486
LGA    P      17      P      17          0.460
LGA    L      18      L      18          0.794
LGA    V      19      V      19          0.697
LGA    F      20      F      20          0.568
LGA    D      21      D      21          0.478
LGA    K      22      K      22          0.825
LGA    S      23      S      23          1.616
LGA    K      24      K      24          1.601
LGA    D      25      D      25          0.687
LGA    E      26      E      26          1.392
LGA    L      27      L      27          1.360
LGA    I      28      I      28          0.635
LGA    C      29      C      29          1.395
LGA    K      30      K      30          2.429
LGA    G      31      G      31          1.953
LGA    D      32      D      32          0.645
LGA    R      33      R      33          0.925
LGA    L      34      L      34          0.882
LGA    A      35      A      35          2.057
LGA    F      36      F      36          2.580
LGA    P      37      P      37          2.472
LGA    I      38      I      38          1.225
LGA    K      39      K      39          3.211
LGA    D      40      D      40           -
LGA    G      41      G      41           -
LGA    -       -      I      42           -
LGA    I      42      P      43          2.865
LGA    P      43      M      44          3.173
LGA    M      44      M      45          3.033
LGA    M      45      L      46          4.568
LGA    L      46      E      47           -
LGA    E      47      S      48           -
LGA    S      48      E      49           -
LGA    E      49      A      50           -
LGA    A      50      R      51           -
LGA    R      51      E      52           -
LGA    E      52      L      53           -
LGA    L      53      A      54           -
LGA    A      54      P      55           -
LGA    P      55      E      56           -
LGA    E      56      E      57           -
LGA    E      57      E      58           -
LGA    E      58      V      59           -
LGA    V      59      K      60           -
LGA    K      60      L      61           -
LGA    L      61      E      62           -
LGA    E      62      -       -           -
LGA    H      63      -       -           -
LGA    H      64      -       -           -
LGA    H      65      -       -           -
LGA    H      66      -       -           -
LGA    H      67      -       -           -
LGA    H      68      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   68   61    5.0     36    1.98    86.11     53.998     1.733

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.052402 * X  +  -0.816254 * Y  +  -0.575311 * Z  +  11.436770
  Y_new =  -0.657028 * X  +   0.405669 * Y  +  -0.635410 * Z  +  32.112263
  Z_new =   0.752043 * X  +   0.411292 * Y  +  -0.515044 * Z  +  54.066704 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.467732   -0.673861  [ DEG:   141.3906    -38.6094 ]
  Theta =  -0.851156   -2.290437  [ DEG:   -48.7676   -131.2324 ]
  Phi   =  -1.491209    1.650384  [ DEG:   -85.4400     94.5600 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0348TS599_5                                  
REMARK     2: T0348.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0348TS599_5.T0348.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   68   61   5.0   36   1.98   86.11  53.998
REMARK  ---------------------------------------------------------- 
MOLECULE T0348TS599_5
PFRMAT TS                                                                       
TARGET T0348                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      21.908  40.563  59.247  1.00  0.00              
ATOM      2  CA  ASP     2      19.157  40.059  62.381  1.00  0.00              
ATOM      3  CA  ALA     3      15.857  41.691  62.351  1.00  0.00              
ATOM      4  CA  LYS     4      15.289  41.631  58.663  1.00  0.00              
ATOM      5  CA  PHE     5      16.103  37.989  58.368  1.00  0.00              
ATOM      6  CA  LEU     6      13.749  37.111  61.262  1.00  0.00              
ATOM      7  CA  GLU     7      10.952  39.111  59.773  1.00  0.00              
ATOM      8  CA  ILE     8      11.492  37.694  56.343  1.00  0.00              
ATOM      9  CA  LEU     9      11.281  34.120  57.741  1.00  0.00              
ATOM     10  CA  VAL    10       8.326  33.813  60.116  1.00  0.00              
ATOM     11  CA  CYS    11       6.658  30.370  59.961  1.00  0.00              
ATOM     12  CA  PRO    12       2.981  30.080  60.676  1.00  0.00              
ATOM     13  CA  LEU    13       2.970  27.052  62.848  1.00  0.00              
ATOM     14  CA  CYS    14       5.782  27.561  65.268  1.00  0.00              
ATOM     15  CA  LYS    15       6.840  31.140  64.664  1.00  0.00              
ATOM     16  CA  GLY    16      10.458  30.207  64.266  1.00  0.00              
ATOM     17  CA  PRO    17      12.954  31.252  61.802  1.00  0.00              
ATOM     18  CA  LEU    18      12.622  30.180  58.187  1.00  0.00              
ATOM     19  CA  VAL    19      15.472  28.306  56.425  1.00  0.00              
ATOM     20  CA  PHE    20      15.839  28.529  52.687  1.00  0.00              
ATOM     21  CA  ASP    21      17.382  25.821  50.619  1.00  0.00              
ATOM     22  CA  LYS    22      18.552  27.659  47.428  1.00  0.00              
ATOM     23  CA  SER    23      19.207  24.637  45.343  1.00  0.00              
ATOM     24  CA  LYS    24      15.777  23.113  45.672  1.00  0.00              
ATOM     25  CA  ASP    25      13.748  26.329  46.006  1.00  0.00              
ATOM     26  CA  GLU    26      12.259  24.985  49.156  1.00  0.00              
ATOM     27  CA  LEU    27      11.468  26.685  52.406  1.00  0.00              
ATOM     28  CA  ILE    28      12.215  24.751  55.547  1.00  0.00              
ATOM     29  CA  CYS    29      10.479  25.570  58.763  1.00  0.00              
ATOM     30  CA  LYS    30      12.814  25.180  61.692  1.00  0.00              
ATOM     31  CA  GLY    31      10.593  24.002  64.515  1.00  0.00              
ATOM     32  CA  ASP    32       8.534  21.498  62.639  1.00  0.00              
ATOM     33  CA  ARG    33      11.153  20.346  60.086  1.00  0.00              
ATOM     34  CA  LEU    34       8.827  20.651  57.155  1.00  0.00              
ATOM     35  CA  ALA    35      10.121  20.979  53.643  1.00  0.00              
ATOM     36  CA  PHE    36       8.012  23.426  51.728  1.00  0.00              
ATOM     37  CA  PRO    37       8.272  24.249  48.058  1.00  0.00              
ATOM     38  CA  ILE    38       7.956  27.986  47.447  1.00  0.00              
ATOM     39  CA  LYS    39       4.232  28.347  46.907  1.00  0.00              
ATOM     40  CA  ASP    40       2.564  26.292  49.695  1.00  0.00              
ATOM     41  CA  GLY    41       5.090  27.507  52.238  1.00  0.00              
ATOM     42  CA  ILE    42       4.607  31.208  51.564  1.00  0.00              
ATOM     43  CA  PRO    43       0.808  31.132  52.020  1.00  0.00              
ATOM     44  CA  MET    44       1.005  29.193  55.297  1.00  0.00              
ATOM     45  CA  MET    45       3.565  31.504  56.796  1.00  0.00              
ATOM     46  CA  LEU    46       2.071  34.893  55.788  1.00  0.00              
ATOM     47  CA  GLU    47       3.339  38.146  57.305  1.00  0.00              
ATOM     48  CA  SER    48       1.898  40.664  54.818  1.00  0.00              
ATOM     49  CA  GLU    49       5.265  42.079  53.734  1.00  0.00              
ATOM     50  CA  ALA    50       6.775  38.635  53.105  1.00  0.00              
ATOM     51  CA  ARG    51       3.659  37.529  51.203  1.00  0.00              
ATOM     52  CA  GLU    52       3.925  40.493  48.789  1.00  0.00              
ATOM     53  CA  LEU    53       7.569  39.989  47.983  1.00  0.00              
ATOM     54  CA  ALA    54       8.257  39.583  44.344  1.00  0.00              
ATOM     55  CA  PRO    55      10.375  36.543  43.297  1.00  0.00              
ATOM     56  CA  GLU    56      13.335  38.806  42.585  1.00  0.00              
ATOM     57  CA  GLU    57      13.158  40.570  45.958  1.00  0.00              
ATOM     58  CA  GLU    58      12.982  37.163  47.694  1.00  0.00              
ATOM     59  CA  VAL    59      16.133  36.025  45.831  1.00  0.00              
ATOM     60  CA  LYS    60      17.908  39.286  46.855  1.00  0.00              
ATOM     61  CA  LEU    61      16.898  38.898  50.461  1.00  0.00              
ATOM     62  CA  GLU    62      18.143  35.287  50.576  1.00  0.00              
ATOM     63  CA  HIS    63      21.502  36.281  49.023  1.00  0.00              
ATOM     64  CA  HIS    64      22.187  39.311  51.195  1.00  0.00              
ATOM     65  CA  HIS    65      21.408  37.333  54.362  1.00  0.00              
ATOM     66  CA  HIS    66      23.515  34.507  53.619  1.00  0.00              
ATOM     67  CA  HIS    67      25.938  31.179  53.019  1.00  0.00              
ATOM     68  CA  HIS    68      25.524  28.923  49.549  1.00  0.00              
TER                                                                             
END
