
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   18 (  141),  selected   18 , name T0356TS213_1_1-D1
# Molecule2: number of CA atoms  124 (  963),  selected  124 , name T0356_D1.pdb
# PARAMETERS: T0356TS213_1_1-D1.T0356_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    D     314      N       7           -
LGA    -       -      D       8           -
LGA    -       -      L       9           -
LGA    -       -      R      10           -
LGA    A     315      D      11          5.700
LGA    I     316      F      12          3.554
LGA    Y     317      L      13          4.044
LGA    -       -      T      14           -
LGA    -       -      L      15           -
LGA    -       -      L      16           -
LGA    H     318      E      17          1.588
LGA    S     319      Q      18          2.290
LGA    T     320      Q      19          2.043
LGA    Y     321      G      20          2.412
LGA    -       -      E      21           -
LGA    T     322      L      22          2.835
LGA    G     323      K      23          1.576
LGA    -       -      R      24           -
LGA    -       -      I      25           -
LGA    -       -      T      26           -
LGA    -       -      L      27           -
LGA    -       -      P      28           -
LGA    -       -      V      29           -
LGA    -       -      D      30           -
LGA    -       -      P      31           -
LGA    -       -      H      32           -
LGA    -       -      L      33           -
LGA    -       -      E      34           -
LGA    -       -      I      35           -
LGA    -       -      T      36           -
LGA    -       -      E      37           -
LGA    -       -      I      38           -
LGA    -       -      A      39           -
LGA    -       -      D      40           -
LGA    -       -      R      41           -
LGA    -       -      T      42           -
LGA    -       -      L      43           -
LGA    -       -      R      44           -
LGA    -       -      A      45           -
LGA    -       -      G      46           -
LGA    -       -      G      47           -
LGA    R     324      P      48          2.358
LGA    P     325      A      49          1.936
LGA    -       -      L      50           -
LGA    -       -      L      51           -
LGA    -       -      F      52           -
LGA    -       -      E      53           -
LGA    -       -      N      54           -
LGA    -       -      P      55           -
LGA    -       -      K      56           -
LGA    -       -      G      57           -
LGA    -       -      Y      58           -
LGA    -       -      S      59           -
LGA    -       -      M      60           -
LGA    -       -      P      61           -
LGA    -       -      V      62           -
LGA    -       -      L      63           -
LGA    -       -      C      64           -
LGA    -       -      N      65           -
LGA    P     326      L      66          2.964
LGA    -       -      F      67           -
LGA    -       -      G      68           -
LGA    -       -      T      69           -
LGA    -       -      P      70           -
LGA    -       -      K      71           -
LGA    D     327      R      72          2.746
LGA    E     328      V      73          1.670
LGA    P     329      A      74          1.233
LGA    A     330      M      75          1.315
LGA    V     331      G      76          1.159
LGA    -       -      M      77           -
LGA    -       -      G      78           -
LGA    -       -      Q      79           -
LGA    -       -      E      80           -
LGA    -       -      D      81           -
LGA    -       -      V      82           -
LGA    -       -      S      83           -
LGA    -       -      A      84           -
LGA    -       -      L      85           -
LGA    -       -      R      86           -
LGA    -       -      E      87           -
LGA    -       -      V      88           -
LGA    -       -      G      89           -
LGA    -       -      K      90           -
LGA    -       -      L      91           -
LGA    -       -      L      92           -
LGA    -       -      A      93           -
LGA    -       -      F      94           -
LGA    -       -      L      95           -
LGA    -       -      K      96           -
LGA    -       -      D     314           -
LGA    -       -      A     315           -
LGA    -       -      I     316           -
LGA    -       -      Y     317           -
LGA    -       -      H     318           -
LGA    -       -      S     319           -
LGA    -       -      T     320           -
LGA    -       -      Y     321           -
LGA    -       -      T     322           -
LGA    -       -      G     323           -
LGA    -       -      R     324           -
LGA    -       -      P     325           -
LGA    -       -      P     326           -
LGA    -       -      D     327           -
LGA    -       -      E     328           -
LGA    -       -      P     329           -
LGA    -       -      A     330           -
LGA    -       -      V     331           -
LGA    -       -      L     332           -
LGA    -       -      G     333           -
LGA    -       -      V     334           -
LGA    -       -      A     335           -
LGA    -       -      L     336           -
LGA    -       -      N     337           -
LGA    -       -      E     338           -
LGA    -       -      V     339           -
LGA    -       -      F     340           -
LGA    -       -      V     341           -
LGA    -       -      P     342           -
LGA    -       -      I     343           -
LGA    -       -      L     344           -
LGA    -       -      Q     345           -
LGA    -       -      K     346           -
LGA    -       -      Q     347           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   18  124    5.0     17    2.69     0.00     10.702     0.610

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.402864 * X  +   0.162063 * Y  +   0.900798 * Z  +  52.960350
  Y_new =  -0.098455 * X  +   0.970814 * Y  +  -0.218691 * Z  +  39.164112
  Z_new =  -0.909949 * X  +  -0.176791 * Y  +  -0.375150 * Z  + 126.715637 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.701205    0.440388  [ DEG:  -154.7677     25.2324 ]
  Theta =   1.143161    1.998431  [ DEG:    65.4983    114.5017 ]
  Phi   =  -2.901902    0.239690  [ DEG:  -166.2668     13.7332 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS213_1_1-D1                             
REMARK     2: T0356_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0356TS213_1_1-D1.T0356_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   18  124   5.0   17   2.69    0.00  10.702
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS213_1_1-D1
REMARK PARENT number 1
PFRMAT TS
TARGET T0356
PARENT 1eje_A
ATOM   1375  N   ASP   314      67.939  85.143  83.175  1.00 59.03       1SG1376
ATOM   1376  CA  ASP   314      66.841  84.693  82.364  1.00 59.03       1SG1377
ATOM   1377  CB  ASP   314      66.669  85.489  81.057  1.00 59.03       1SG1378
ATOM   1378  CG  ASP   314      66.087  86.861  81.363  1.00 59.03       1SG1379
ATOM   1379  OD1 ASP   314      65.871  87.164  82.566  1.00 59.03       1SG1380
ATOM   1380  OD2 ASP   314      65.850  87.622  80.389  1.00 59.03       1SG1381
ATOM   1381  C   ASP   314      67.088  83.279  81.956  1.00 59.03       1SG1382
ATOM   1382  O   ASP   314      66.280  82.689  81.240  1.00 59.03       1SG1383
ATOM   1383  N   ALA   315      68.199  82.681  82.417  1.00 63.20       1SG1384
ATOM   1384  CA  ALA   315      68.484  81.336  82.009  1.00 63.20       1SG1385
ATOM   1385  CB  ALA   315      69.868  80.858  82.478  1.00 63.20       1SG1386
ATOM   1386  C   ALA   315      67.481  80.405  82.600  1.00 63.20       1SG1387
ATOM   1387  O   ALA   315      66.877  79.581  81.915  1.00 63.20       1SG1388
ATOM   1388  N   ILE   316      67.262  80.549  83.914  1.00 66.84       1SG1389
ATOM   1389  CA  ILE   316      66.370  79.673  84.602  1.00 66.84       1SG1390
ATOM   1390  CB  ILE   316      67.095  78.494  85.214  1.00 66.84       1SG1391
ATOM   1391  CG2 ILE   316      66.139  77.550  85.970  1.00 66.84       1SG1392
ATOM   1392  CG1 ILE   316      67.766  77.753  84.045  1.00 66.84       1SG1393
ATOM   1393  CD1 ILE   316      68.559  76.513  84.445  1.00 66.84       1SG1394
ATOM   1394  C   ILE   316      65.660  80.534  85.590  1.00 66.84       1SG1395
ATOM   1395  O   ILE   316      65.894  81.742  85.624  1.00 66.84       1SG1396
ATOM   1396  N   TYR   317      64.744  79.935  86.375  1.00245.16       1SG1397
ATOM   1397  CA  TYR   317      63.895  80.645  87.278  1.00245.16       1SG1398
ATOM   1398  CB  TYR   317      63.108  79.728  88.245  1.00245.16       1SG1399
ATOM   1399  CG  TYR   317      63.977  79.114  89.296  1.00245.16       1SG1400
ATOM   1400  CD1 TYR   317      64.199  79.773  90.483  1.00245.16       1SG1401
ATOM   1401  CD2 TYR   317      64.541  77.873  89.112  1.00245.16       1SG1402
ATOM   1402  CE1 TYR   317      64.985  79.216  91.463  1.00245.16       1SG1403
ATOM   1403  CE2 TYR   317      65.329  77.309  90.089  1.00245.16       1SG1404
ATOM   1404  CZ  TYR   317      65.550  77.981  91.267  1.00245.16       1SG1405
ATOM   1405  OH  TYR   317      66.355  77.403  92.274  1.00245.16       1SG1406
ATOM   1406  C   TYR   317      64.698  81.616  88.067  1.00245.16       1SG1407
ATOM   1407  O   TYR   317      65.674  81.267  88.724  1.00245.16       1SG1408
ATOM   1408  N   HIS   318      64.280  82.892  87.987  1.00185.94       1SG1409
ATOM   1409  CA  HIS   318      64.944  83.984  88.622  1.00185.94       1SG1410
ATOM   1410  ND1 HIS   318      66.421  87.098  88.703  1.00185.94       1SG1411
ATOM   1411  CG  HIS   318      66.631  85.858  88.144  1.00185.94       1SG1412
ATOM   1412  CB  HIS   318      65.558  84.960  87.597  1.00185.94       1SG1413
ATOM   1413  NE2 HIS   318      68.613  86.739  88.767  1.00185.94       1SG1414
ATOM   1414  CD2 HIS   318      67.976  85.654  88.188  1.00185.94       1SG1415
ATOM   1415  CE1 HIS   318      67.637  87.578  89.063  1.00185.94       1SG1416
ATOM   1416  C   HIS   318      63.873  84.707  89.369  1.00185.94       1SG1417
ATOM   1417  O   HIS   318      62.854  84.124  89.734  1.00185.94       1SG1418
ATOM   1418  N   SER   319      64.090  86.005  89.639  1.00 80.95       1SG1419
ATOM   1419  CA  SER   319      63.113  86.764  90.354  1.00 80.95       1SG1420
ATOM   1420  CB  SER   319      63.526  88.236  90.540  1.00 80.95       1SG1421
ATOM   1421  OG  SER   319      64.689  88.323  91.350  1.00 80.95       1SG1422
ATOM   1422  C   SER   319      61.849  86.750  89.557  1.00 80.95       1SG1423
ATOM   1423  O   SER   319      60.797  86.356  90.059  1.00 80.95       1SG1424
ATOM   1424  N   THR   320      61.925  87.147  88.270  1.00 92.73       1SG1425
ATOM   1425  CA  THR   320      60.732  87.206  87.478  1.00 92.73       1SG1426
ATOM   1426  CB  THR   320      60.958  87.712  86.081  1.00 92.73       1SG1427
ATOM   1427  OG1 THR   320      61.844  86.850  85.384  1.00 92.73       1SG1428
ATOM   1428  CG2 THR   320      61.534  89.138  86.145  1.00 92.73       1SG1429
ATOM   1429  C   THR   320      60.159  85.831  87.382  1.00 92.73       1SG1430
ATOM   1430  O   THR   320      58.971  85.634  87.635  1.00 92.73       1SG1431
ATOM   1431  N   TYR   321      60.983  84.819  87.046  1.00137.75       1SG1432
ATOM   1432  CA  TYR   321      60.379  83.527  86.974  1.00137.75       1SG1433
ATOM   1433  CB  TYR   321      60.812  82.742  85.727  1.00137.75       1SG1434
ATOM   1434  CG  TYR   321      60.274  83.545  84.594  1.00137.75       1SG1435
ATOM   1435  CD1 TYR   321      58.934  83.492  84.283  1.00137.75       1SG1436
ATOM   1436  CD2 TYR   321      61.100  84.353  83.845  1.00137.75       1SG1437
ATOM   1437  CE1 TYR   321      58.428  84.236  83.243  1.00137.75       1SG1438
ATOM   1438  CE2 TYR   321      60.599  85.099  82.804  1.00137.75       1SG1439
ATOM   1439  CZ  TYR   321      59.260  85.040  82.501  1.00137.75       1SG1440
ATOM   1440  OH  TYR   321      58.743  85.805  81.434  1.00137.75       1SG1441
ATOM   1441  C   TYR   321      60.779  82.811  88.214  1.00137.75       1SG1442
ATOM   1442  O   TYR   321      61.798  82.128  88.266  1.00137.75       1SG1443
ATOM   1443  N   THR   322      59.940  82.945  89.256  1.00116.63       1SG1444
ATOM   1444  CA  THR   322      60.259  82.401  90.538  1.00116.63       1SG1445
ATOM   1445  CB  THR   322      59.706  83.228  91.664  1.00116.63       1SG1446
ATOM   1446  OG1 THR   322      60.086  82.677  92.917  1.00116.63       1SG1447
ATOM   1447  CG2 THR   322      58.172  83.281  91.540  1.00116.63       1SG1448
ATOM   1448  C   THR   322      59.681  81.035  90.660  1.00116.63       1SG1449
ATOM   1449  O   THR   322      58.546  80.782  90.258  1.00116.63       1SG1450
ATOM   1450  N   GLY   323      60.486  80.102  91.201  1.00 63.54       1SG1451
ATOM   1451  CA  GLY   323      60.005  78.780  91.455  1.00 63.54       1SG1452
ATOM   1452  C   GLY   323      59.572  78.190  90.162  1.00 63.54       1SG1453
ATOM   1453  O   GLY   323      58.609  77.426  90.112  1.00 63.54       1SG1454
ATOM   1454  N   ARG   324      60.270  78.539  89.070  1.00273.36       1SG1455
ATOM   1455  CA  ARG   324      59.900  78.008  87.797  1.00273.36       1SG1456
ATOM   1456  CB  ARG   324      59.826  79.059  86.682  1.00273.36       1SG1457
ATOM   1457  CG  ARG   324      59.459  78.474  85.317  1.00273.36       1SG1458
ATOM   1458  CD  ARG   324      59.727  79.446  84.167  1.00273.36       1SG1459
ATOM   1459  NE  ARG   324      61.167  79.823  84.249  1.00273.36       1SG1460
ATOM   1460  CZ  ARG   324      61.708  80.669  83.327  1.00273.36       1SG1461
ATOM   1461  NH1 ARG   324      60.932  81.167  82.320  1.00273.36       1SG1462
ATOM   1462  NH2 ARG   324      63.028  81.012  83.407  1.00273.36       1SG1463
ATOM   1463  C   ARG   324      60.962  77.046  87.400  1.00273.36       1SG1464
ATOM   1464  O   ARG   324      62.088  77.079  87.892  1.00273.36       1SG1465
ATOM   1465  N   PRO   325      60.582  76.165  86.524  1.00185.93       1SG1466
ATOM   1466  CA  PRO   325      61.515  75.207  86.012  1.00185.93       1SG1467
ATOM   1467  CD  PRO   325      59.223  75.650  86.548  1.00185.93       1SG1468
ATOM   1468  CB  PRO   325      60.665  74.132  85.332  1.00185.93       1SG1469
ATOM   1469  CG  PRO   325      59.329  74.188  86.093  1.00185.93       1SG1470
ATOM   1470  C   PRO   325      62.431  75.961  85.110  1.00185.93       1SG1471
ATOM   1471  O   PRO   325      62.092  77.094  84.770  1.00185.93       1SG1472
ATOM   1472  N   PRO   326      63.555  75.401  84.744  1.00 89.35       1SG1473
ATOM   1473  CA  PRO   326      64.511  76.096  83.926  1.00 89.35       1SG1474
ATOM   1474  CD  PRO   326      63.686  73.957  84.619  1.00 89.35       1SG1475
ATOM   1475  CB  PRO   326      65.553  75.052  83.536  1.00 89.35       1SG1476
ATOM   1476  CG  PRO   326      64.744  73.743  83.524  1.00 89.35       1SG1477
ATOM   1477  C   PRO   326      63.837  76.651  82.716  1.00 89.35       1SG1478
ATOM   1478  O   PRO   326      63.008  75.962  82.121  1.00 89.35       1SG1479
ATOM   1479  N   ASP   327      64.166  77.903  82.349  1.00 57.39       1SG1480
ATOM   1480  CA  ASP   327      63.553  78.488  81.196  1.00 57.39       1SG1481
ATOM   1481  CB  ASP   327      64.034  79.928  80.944  1.00 57.39       1SG1482
ATOM   1482  CG  ASP   327      63.136  80.589  79.909  1.00 57.39       1SG1483
ATOM   1483  OD1 ASP   327      62.391  79.857  79.206  1.00 57.39       1SG1484
ATOM   1484  OD2 ASP   327      63.186  81.844  79.806  1.00 57.39       1SG1485
ATOM   1485  C   ASP   327      63.960  77.631  80.042  1.00 57.39       1SG1486
ATOM   1486  O   ASP   327      65.077  77.733  79.541  1.00 57.39       1SG1487
ATOM   1487  N   GLU   328      63.050  76.749  79.589  1.00118.76       1SG1488
ATOM   1488  CA  GLU   328      63.394  75.841  78.535  1.00118.76       1SG1489
ATOM   1489  CB  GLU   328      62.306  74.779  78.273  1.00118.76       1SG1490
ATOM   1490  CG  GLU   328      62.765  73.573  77.441  1.00118.76       1SG1491
ATOM   1491  CD  GLU   328      62.712  73.909  75.954  1.00118.76       1SG1492
ATOM   1492  OE1 GLU   328      61.602  73.804  75.368  1.00118.76       1SG1493
ATOM   1493  OE2 GLU   328      63.779  74.261  75.384  1.00118.76       1SG1494
ATOM   1494  C   GLU   328      63.627  76.589  77.261  1.00118.76       1SG1495
ATOM   1495  O   GLU   328      64.620  76.341  76.580  1.00118.76       1SG1496
ATOM   1496  N   PRO   329      62.777  77.509  76.898  1.00103.39       1SG1497
ATOM   1497  CA  PRO   329      62.992  78.168  75.644  1.00103.39       1SG1498
ATOM   1498  CD  PRO   329      61.367  77.467  77.250  1.00103.39       1SG1499
ATOM   1499  CB  PRO   329      61.728  78.978  75.372  1.00103.39       1SG1500
ATOM   1500  CG  PRO   329      60.634  78.169  76.093  1.00103.39       1SG1501
ATOM   1501  C   PRO   329      64.256  78.949  75.618  1.00103.39       1SG1502
ATOM   1502  O   PRO   329      64.925  78.954  74.587  1.00103.39       1SG1503
ATOM   1503  N   ALA   330      64.601  79.624  76.728  1.00 31.03       1SG1504
ATOM   1504  CA  ALA   330      65.809  80.390  76.751  1.00 31.03       1SG1505
ATOM   1505  CB  ALA   330      65.984  81.189  78.053  1.00 31.03       1SG1506
ATOM   1506  C   ALA   330      66.950  79.437  76.650  1.00 31.03       1SG1507
ATOM   1507  O   ALA   330      67.908  79.662  75.910  1.00 31.03       1SG1508
ATOM   1508  N   VAL   331      66.850  78.320  77.393  1.00 87.00       1SG1509
ATOM   1509  CA  VAL   331      67.917  77.368  77.449  1.00 87.00       1SG1510
ATOM   1510  CB  VAL   331      67.777  76.419  78.603  1.00 87.00       1SG1511
ATOM   1511  CG1 VAL   331      67.752  77.249  79.898  1.00 87.00       1SG1512
ATOM   1512  CG2 VAL   331      66.522  75.557  78.399  1.00 87.00       1SG1513
ATOM   1513  C   VAL   331      67.923  76.552  76.163  1.00 87.00       1SG1514
ATOM   1514  O   VAL   331      68.860  75.723  76.004  1.00 87.00       1SG1515
ATOM   1515  OXT VAL   331      67.003  76.746  75.325  1.00 87.00       1SG1516
TER
END
