
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  141 (  141),  selected  141 , name T0360TS168_4
# Molecule2: number of CA atoms  116 (  917),  selected  116 , name T0360.pdb
# PARAMETERS: T0360TS168_4.T0360.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1           -
LGA    T       2      T       2           -
LGA    Q       3      Q       3           -
LGA    E       4      E       4           -
LGA    T       5      T       5           -
LGA    A       6      A       6           -
LGA    L       7      L       7           -
LGA    G       8      G       8           -
LGA    A       9      A       9           -
LGA    A      10      A      10           -
LGA    L      11      L      11           -
LGA    K      12      K      12           -
LGA    S      13      S      13           -
LGA    A      14      A      14           -
LGA    V      15      V      15           -
LGA    Q      16      Q      16           -
LGA    T      17      T      17           -
LGA    M      18      M      18           -
LGA    S      19      S      19           -
LGA    K      20      K      20           -
LGA    K      21      K      21           -
LGA    K      22      K      22           -
LGA    Q      23      Q      23           -
LGA    T      24      T      24           -
LGA    E      25      E      25           -
LGA    -       -      M      26           -
LGA    -       -      I      27           -
LGA    -       -      A      28           -
LGA    -       -      D      29           -
LGA    M      26      H      30           #
LGA    -       -      I      31           -
LGA    I      27      Y      32          3.919
LGA    A      28      G      33          3.815
LGA    D      29      -       -           -
LGA    H      30      K      34          3.055
LGA    I      31      Y      35          4.113
LGA    Y      32      -       -           -
LGA    G      33      -       -           -
LGA    K      34      D      36           #
LGA    Y      35      -       -           -
LGA    D      36      -       -           -
LGA    V      37      -       -           -
LGA    F      38      V      37           #
LGA    K      39      F      38           -
LGA    R      40      K      39           -
LGA    F      41      R      40           -
LGA    K      42      F      41           -
LGA    -       -      K      42           -
LGA    -       -      P      43           -
LGA    -       -      L      44           -
LGA    P      43      A      45          4.981
LGA    L      44      L      46           #
LGA    A      45      -       -           -
LGA    L      46      -       -           -
LGA    G      47      G      47          4.258
LGA    I      48      I      48          2.096
LGA    D      49      D      49          2.856
LGA    Q      50      Q      50          4.829
LGA    D      51      D      51           #
LGA    L      52      L      52          4.782
LGA    I      53      I      53          1.994
LGA    A      54      A      54           #
LGA    A      55      A      55           -
LGA    -       -      L      56           -
LGA    L      56      P      57           #
LGA    P      57      -       -           -
LGA    Q      58      Q      58           #
LGA    Y      59      Y      59          3.561
LGA    D      60      D      60          1.041
LGA    A      61      A      61          1.923
LGA    A      62      A      62          1.945
LGA    L      63      L      63          1.696
LGA    I      64      I      64          1.133
LGA    A      65      A      65          0.714
LGA    R      66      R      66          1.013
LGA    V      67      V      67          0.723
LGA    L      68      L      68          0.305
LGA    A      69      A      69          0.771
LGA    N      70      N      70          1.379
LGA    H      71      H      71          1.352
LGA    C      72      C      72          1.279
LGA    R      73      R      73          1.378
LGA    R      74      R      74          2.097
LGA    -       -      P      75           -
LGA    P      75      R      76          4.433
LGA    R      76      Y      77          3.837
LGA    Y      77      L      78          3.222
LGA    L      78      K      79          2.427
LGA    K      79      A      80          3.585
LGA    A      80      L      81           -
LGA    L      81      -       -           -
LGA    A      82      -       -           -
LGA    R      83      A      82          4.882
LGA    G      84      R      83          4.068
LGA    G      85      G      84           #
LGA    K      86      -       -           -
LGA    R      87      -       -           -
LGA    F      88      -       -           -
LGA    D      89      -       -           -
LGA    L      90      -       -           -
LGA    N      91      -       -           -
LGA    N      92      -       -           -
LGA    R      93      -       -           -
LGA    F      94      -       -           -
LGA    K      95      -       -           -
LGA    G      96      -       -           -
LGA    E      97      -       -           -
LGA    V      98      -       -           -
LGA    T      99      G      85           #
LGA    P     100      K      86           -
LGA    -       -      R      87           -
LGA    -       -      F      88           -
LGA    -       -      D      89           -
LGA    -       -      L      90           -
LGA    -       -      N      91           -
LGA    -       -      N      92           -
LGA    -       -      R      93           -
LGA    -       -      F      94           -
LGA    -       -      K      95           -
LGA    -       -      G      96           -
LGA    -       -      E      97           -
LGA    E     101      V      98          4.978
LGA    E     102      T      99           #
LGA    Q     103      P     100           #
LGA    A     104      E     101          3.238
LGA    I     105      E     102          2.084
LGA    -       -      Q     103           -
LGA    -       -      A     104           -
LGA    -       -      I     105           -
LGA    A     106      A     106          1.844
LGA    Q     107      Q     107           #
LGA    N     108      N     108          4.223
LGA    H     109      H     109          2.932
LGA    P     110      P     110          4.875
LGA    F     111      F     111           -
LGA    V     112      V     112           -
LGA    Q     113      Q     113           -
LGA    Q     114      Q     114           -
LGA    A     115      A     115           -
LGA    L     116      L     116           -
LGA    Q     117      -       -           -
LGA    Q     118      -       -           -
LGA    Q     119      -       -           -
LGA    S     120      -       -           -
LGA    A     121      -       -           -
LGA    Q     122      -       -           -
LGA    A     123      -       -           -
LGA    A     124      -       -           -
LGA    A     125      -       -           -
LGA    E     126      -       -           -
LGA    T     127      -       -           -
LGA    L     128      -       -           -
LGA    S     129      -       -           -
LGA    V     130      -       -           -
LGA    E     131      -       -           -
LGA    A     132      -       -           -
LGA    E     133      -       -           -
LGA    A     134      -       -           -
LGA    A     135      -       -           -
LGA    E     136      -       -           -
LGA    S     137      -       -           -
LGA    S     138      -       -           -
LGA    A     139      -       -           -
LGA    A     140      -       -           -
LGA    E     141      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  141  116    5.0     41    3.12    63.41     22.893     1.274

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.574893 * X  +  -0.036874 * Y  +   0.817398 * Z  + -72.998520
  Y_new =   0.456461 * X  +   0.814635 * Y  +   0.357788 * Z  +   4.331370
  Z_new =  -0.679074 * X  +   0.578800 * Y  +  -0.451496 * Z  + -17.327934 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.233257   -0.908336  [ DEG:   127.9562    -52.0438 ]
  Theta =   0.746501    2.395092  [ DEG:    42.7713    137.2287 ]
  Phi   =   2.470525   -0.671068  [ DEG:   141.5506    -38.4494 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0360TS168_4                                  
REMARK     2: T0360.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0360TS168_4.T0360.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  141  116   5.0   41   3.12   63.41  22.893
REMARK  ---------------------------------------------------------- 
MOLECULE T0360TS168_4
PFRMAT TS
TARGET T0360
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1     -85.744  20.945  -3.184  1.00 25.00           C
ATOM      2  CA  THR     2     -82.007  21.136  -2.844  1.00 25.00           C
ATOM      3  CA  GLN     3     -80.730  20.053   0.618  1.00 25.00           C
ATOM      4  CA  GLU     4     -77.426  19.511   2.479  1.00 25.00           C
ATOM      5  CA  THR     5     -79.229  17.393   5.113  1.00 25.00           C
ATOM      6  CA  ALA     6     -80.866  15.307   2.350  1.00 25.00           C
ATOM      7  CA  LEU     7     -77.455  14.786   0.689  1.00 25.00           C
ATOM      8  CA  GLY     8     -75.962  13.689   4.041  1.00 25.00           C
ATOM      9  CA  ALA     9     -78.851  11.227   4.551  1.00 25.00           C
ATOM     10  CA  ALA    10     -78.300   9.815   1.034  1.00 25.00           C
ATOM     11  CA  LEU    11     -74.562   9.404   1.759  1.00 25.00           C
ATOM     12  CA  LYS    12     -75.371   7.595   5.036  1.00 25.00           C
ATOM     13  CA  SER    13     -77.788   5.271   3.186  1.00 25.00           C
ATOM     14  CA  ALA    14     -75.099   4.522   0.564  1.00 25.00           C
ATOM     15  CA  VAL    15     -72.576   3.743   3.337  1.00 25.00           C
ATOM     16  CA  GLN    16     -75.101   1.398   5.009  1.00 25.00           C
ATOM     17  CA  THR    17     -75.707  -0.372   1.667  1.00 25.00           C
ATOM     18  CA  MET    18     -74.062  -3.275   3.491  1.00 25.00           C
ATOM     19  CA  SER    19     -74.326  -6.806   2.098  1.00 25.00           C
ATOM     20  CA  LYS    20     -72.629  -8.444  -0.812  1.00 25.00           C
ATOM     21  CA  LYS    21     -73.376 -12.082  -1.745  1.00 25.00           C
ATOM     22  CA  LYS    22     -77.074 -11.220  -2.250  1.00 25.00           C
ATOM     23  CA  GLN    23     -76.105  -8.259  -4.477  1.00 25.00           C
ATOM     24  CA  THR    24     -73.805 -10.528  -6.535  1.00 25.00           C
ATOM     25  CA  GLU    25     -76.635 -13.079  -6.928  1.00 25.00           C
ATOM     26  CA  MET    26     -79.013 -10.303  -8.070  1.00 25.00           C
ATOM     27  CA  ILE    27     -76.420  -9.094 -10.616  1.00 25.00           C
ATOM     28  CA  ALA    28     -76.005 -12.669 -11.926  1.00 25.00           C
ATOM     29  CA  ASP    29     -79.804 -13.014 -12.260  1.00 25.00           C
ATOM     30  CA  HIS    30     -79.963  -9.698 -14.170  1.00 25.00           C
ATOM     31  CA  ILE    31     -77.169 -10.882 -16.507  1.00 25.00           C
ATOM     32  CA  TYR    32     -79.043 -14.166 -17.122  1.00 25.00           C
ATOM     33  CA  GLY    33     -77.645 -17.684 -17.160  1.00 25.00           C
ATOM     34  CA  LYS    34     -74.292 -15.872 -17.548  1.00 25.00           C
ATOM     35  CA  TYR    35     -70.935 -15.174 -19.253  1.00 25.00           C
ATOM     36  CA  ASP    36     -72.237 -16.722 -22.505  1.00 25.00           C
ATOM     37  CA  VAL    37     -75.391 -14.558 -22.302  1.00 25.00           C
ATOM     38  CA  PHE    38     -73.242 -11.436 -21.753  1.00 25.00           C
ATOM     39  CA  LYS    39     -71.083 -12.359 -24.779  1.00 25.00           C
ATOM     40  CA  ARG    40     -74.231 -12.835 -26.910  1.00 25.00           C
ATOM     41  CA  PHE    41     -75.544  -9.421 -25.776  1.00 25.00           C
ATOM     42  CA  LYS    42     -72.265  -7.901 -27.017  1.00 25.00           C
ATOM     43  CA  PRO    43     -71.869  -4.092 -26.523  1.00 25.00           C
ATOM     44  CA  LEU    44     -71.542  -4.106 -30.322  1.00 25.00           C
ATOM     45  CA  ALA    45     -75.159  -5.185 -30.812  1.00 25.00           C
ATOM     46  CA  LEU    46     -75.853  -1.893 -32.542  1.00 25.00           C
ATOM     47  CA  GLY    47     -74.782   0.004 -29.405  1.00 25.00           C
ATOM     48  CA  ILE    48     -75.516   1.646 -26.070  1.00 25.00           C
ATOM     49  CA  ASP    49     -77.258  -0.112 -23.148  1.00 25.00           C
ATOM     50  CA  GLN    50     -78.555   3.256 -21.864  1.00 25.00           C
ATOM     51  CA  ASP    51     -79.871   4.109 -25.359  1.00 25.00           C
ATOM     52  CA  LEU    52     -81.625   0.710 -25.554  1.00 25.00           C
ATOM     53  CA  ILE    53     -83.209   1.302 -22.119  1.00 25.00           C
ATOM     54  CA  ALA    54     -84.413   4.760 -23.242  1.00 25.00           C
ATOM     55  CA  ALA    55     -85.920   3.232 -26.414  1.00 25.00           C
ATOM     56  CA  LEU    56     -89.228   3.976 -24.652  1.00 25.00           C
ATOM     57  CA  PRO    57     -91.845   5.731 -22.437  1.00 25.00           C
ATOM     58  CA  GLN    58     -92.929   2.164 -21.521  1.00 25.00           C
ATOM     59  CA  TYR    59     -89.782   0.478 -20.180  1.00 25.00           C
ATOM     60  CA  ASP    60     -89.566   3.128 -17.405  1.00 25.00           C
ATOM     61  CA  ALA    61     -86.230   4.642 -18.429  1.00 25.00           C
ATOM     62  CA  ALA    62     -85.029   7.682 -16.431  1.00 25.00           C
ATOM     63  CA  LEU    63     -83.929   5.394 -13.564  1.00 25.00           C
ATOM     64  CA  ILE    64     -82.029   3.170 -16.035  1.00 25.00           C
ATOM     65  CA  ALA    65     -80.308   6.249 -17.523  1.00 25.00           C
ATOM     66  CA  ARG    66     -79.323   7.426 -14.014  1.00 25.00           C
ATOM     67  CA  VAL    67     -77.905   3.957 -13.223  1.00 25.00           C
ATOM     68  CA  LEU    68     -75.899   4.006 -16.485  1.00 25.00           C
ATOM     69  CA  ALA    69     -74.533   7.478 -15.621  1.00 25.00           C
ATOM     70  CA  ASN    70     -73.530   6.243 -12.138  1.00 25.00           C
ATOM     71  CA  HIS    71     -71.763   3.221 -13.691  1.00 25.00           C
ATOM     72  CA  CYS    72     -69.897   5.526 -16.113  1.00 25.00           C
ATOM     73  CA  ARG    73     -68.830   7.767 -13.198  1.00 25.00           C
ATOM     74  CA  ARG    74     -67.585   4.704 -11.265  1.00 25.00           C
ATOM     75  CA  PRO    75     -65.603   3.546 -14.330  1.00 25.00           C
ATOM     76  CA  ARG    76     -64.054   7.032 -14.676  1.00 25.00           C
ATOM     77  CA  TYR    77     -63.092   7.000 -10.969  1.00 25.00           C
ATOM     78  CA  LEU    78     -61.493   3.546 -11.389  1.00 25.00           C
ATOM     79  CA  LYS    79     -59.528   4.798 -14.428  1.00 25.00           C
ATOM     80  CA  ALA    80     -58.329   7.837 -12.432  1.00 25.00           C
ATOM     81  CA  LEU    81     -57.227   5.550  -9.564  1.00 25.00           C
ATOM     82  CA  ALA    82     -55.327   3.325 -12.036  1.00 25.00           C
ATOM     83  CA  ARG    83     -54.272   4.022 -15.631  1.00 25.00           C
ATOM     84  CA  GLY    84     -53.882   0.302 -16.140  1.00 25.00           C
ATOM     85  CA  GLY    85     -57.389  -0.303 -14.919  1.00 25.00           C
ATOM     86  CA  LYS    86     -56.820  -4.044 -14.694  1.00 25.00           C
ATOM     87  CA  ARG    87     -58.974  -6.710 -13.120  1.00 25.00           C
ATOM     88  CA  PHE    88     -59.914 -10.168 -14.512  1.00 25.00           C
ATOM     89  CA  ASP    89     -57.364 -12.394 -16.320  1.00 25.00           C
ATOM     90  CA  LEU    90     -57.530 -10.773 -19.758  1.00 25.00           C
ATOM     91  CA  ASN    91     -55.755 -13.010 -22.314  1.00 25.00           C
ATOM     92  CA  ASN    92     -53.363 -12.137 -25.148  1.00 25.00           C
ATOM     93  CA  ARG    93     -53.791 -10.898 -28.689  1.00 25.00           C
ATOM     94  CA  PHE    94     -55.493  -7.595 -29.710  1.00 25.00           C
ATOM     95  CA  LYS    95     -53.651  -5.679 -32.422  1.00 25.00           C
ATOM     96  CA  GLY    96     -53.699  -2.672 -30.085  1.00 25.00           C
ATOM     97  CA  GLU    97     -53.539   0.494 -27.894  1.00 25.00           C
ATOM     98  CA  VAL    98     -55.200   2.050 -24.836  1.00 25.00           C
ATOM     99  CA  THR    99     -52.835   4.685 -23.494  1.00 25.00           C
ATOM    100  CA  PRO   100     -54.352   8.156 -23.365  1.00 25.00           C
ATOM    101  CA  GLU   101     -57.806   7.476 -24.875  1.00 25.00           C
ATOM    102  CA  GLU   102     -59.120   6.398 -21.443  1.00 25.00           C
ATOM    103  CA  GLN   103     -57.709   9.592 -19.871  1.00 25.00           C
ATOM    104  CA  ALA   104     -59.383  11.701 -22.595  1.00 25.00           C
ATOM    105  CA  ILE   105     -62.712   9.915 -21.967  1.00 25.00           C
ATOM    106  CA  ALA   106     -62.381  10.567 -18.207  1.00 25.00           C
ATOM    107  CA  GLN   107     -61.665  14.268 -18.887  1.00 25.00           C
ATOM    108  CA  ASN   108     -59.355  17.114 -17.917  1.00 25.00           C
ATOM    109  CA  HIS   109     -60.170  15.953 -14.411  1.00 25.00           C
ATOM    110  CA  PRO   110     -61.654  17.498 -11.256  1.00 25.00           C
ATOM    111  CA  PHE   111     -65.021  18.588  -9.793  1.00 25.00           C
ATOM    112  CA  VAL   112     -65.102  21.599 -12.159  1.00 25.00           C
ATOM    113  CA  GLN   113     -64.338  19.312 -15.135  1.00 25.00           C
ATOM    114  CA  GLN   114     -67.153  16.945 -14.070  1.00 25.00           C
ATOM    115  CA  ALA   115     -69.571  19.903 -13.799  1.00 25.00           C
ATOM    116  CA  LEU   116     -68.546  21.092 -17.293  1.00 25.00           C
ATOM    117  CA  GLN   117     -69.115  17.571 -18.686  1.00 25.00           C
ATOM    118  CA  GLN   118     -72.573  17.454 -17.043  1.00 25.00           C
ATOM    119  CA  GLN   119     -73.435  20.865 -18.555  1.00 25.00           C
ATOM    120  CA  SER   120     -72.309  19.646 -22.008  1.00 25.00           C
ATOM    121  CA  ALA   121     -74.470  16.508 -21.631  1.00 25.00           C
ATOM    122  CA  GLN   122     -77.477  18.665 -20.645  1.00 25.00           C
ATOM    123  CA  ALA   123     -76.902  20.905 -23.698  1.00 25.00           C
ATOM    124  CA  ALA   124     -76.727  17.818 -25.960  1.00 25.00           C
ATOM    125  CA  ALA   125     -79.993  16.501 -24.456  1.00 25.00           C
ATOM    126  CA  GLU   126     -81.665  19.893 -25.052  1.00 25.00           C
ATOM    127  CA  THR   127     -80.449  19.882 -28.684  1.00 25.00           C
ATOM    128  CA  LEU   128     -81.830  16.342 -29.161  1.00 25.00           C
ATOM    129  CA  SER   129     -85.197  17.432 -27.698  1.00 25.00           C
ATOM    130  CA  VAL   130     -85.277  20.443 -30.064  1.00 25.00           C
ATOM    131  CA  GLU   131     -84.513  18.156 -33.040  1.00 25.00           C
ATOM    132  CA  ALA   132     -87.330  15.789 -31.976  1.00 25.00           C
ATOM    133  CA  GLU   133     -89.747  18.747 -31.704  1.00 25.00           C
ATOM    134  CA  ALA   134     -88.722  19.937 -35.198  1.00 25.00           C
ATOM    135  CA  ALA   135     -89.292  16.414 -36.590  1.00 25.00           C
ATOM    136  CA  GLU   136     -92.750  16.298 -34.948  1.00 25.00           C
ATOM    137  CA  SER   137     -92.205  12.561 -34.901  1.00 25.00           C
ATOM    138  CA  SER   138     -90.447   9.524 -36.490  1.00 25.00           C
ATOM    139  CA  ALA   139     -87.886   7.002 -37.694  1.00 25.00           C
ATOM    140  CA  ALA   140     -85.185   4.280 -37.920  1.00 25.00           C
ATOM    141  CA  GLU   141     -82.247   2.256 -36.562  1.00 25.00           C
TER
END
