
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   13 (   52),  selected   13 , name T0361AL586_1
# Molecule2: number of CA atoms  166 ( 1335),  selected  166 , name T0361.pdb
# PARAMETERS: T0361AL586_1.T0361.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      T       3           -
LGA    -       -      L       4           -
LGA    -       -      T       5           -
LGA    -       -      E       6           -
LGA    -       -      D       7           -
LGA    -       -      D       8           -
LGA    -       -      V       9           -
LGA    -       -      L      10           -
LGA    -       -      E      11           -
LGA    -       -      Q      12           -
LGA    -       -      L      13           -
LGA    -       -      D      14           -
LGA    -       -      A      15           -
LGA    -       -      Q      16           -
LGA    -       -      D      17           -
LGA    -       -      N      18           -
LGA    -       -      L      19           -
LGA    -       -      F      20           -
LGA    -       -      S      21           -
LGA    -       -      F      22           -
LGA    -       -      M      23           -
LGA    -       -      K      24           -
LGA    -       -      T      25           -
LGA    -       -      A      26           -
LGA    -       -      H      27           -
LGA    -       -      S      28           -
LGA    -       -      I      29           -
LGA    -       -      L      30           -
LGA    -       -      L      31           -
LGA    -       -      Q      32           -
LGA    -       -      G      33           -
LGA    -       -      I      34           -
LGA    -       -      R      35           -
LGA    -       -      Q      36           -
LGA    -       -      F      37           -
LGA    -       -      L      38           -
LGA    -       -      P      39           -
LGA    -       -      S      40           -
LGA    -       -      L      41           -
LGA    -       -      F      42           -
LGA    -       -      V      43           -
LGA    -       -      D      44           -
LGA    -       -      N      45           -
LGA    -       -      D      46           -
LGA    -       -      E      47           -
LGA    -       -      E      48           -
LGA    -       -      I      49           -
LGA    -       -      V      50           -
LGA    -       -      E      51           -
LGA    -       -      Y      52           -
LGA    -       -      A      53           -
LGA    -       -      V      54           -
LGA    -       -      K      55           -
LGA    -       -      P      56           -
LGA    -       -      L      57           -
LGA    -       -      L      58           -
LGA    -       -      A      59           -
LGA    -       -      Q      60           -
LGA    -       -      S      61           -
LGA    -       -      G      62           -
LGA    -       -      P      63           -
LGA    -       -      L      64           -
LGA    -       -      D      65           -
LGA    -       -      D      66           -
LGA    -       -      I      67           -
LGA    -       -      D      68           -
LGA    -       -      V      69           -
LGA    -       -      A      70           -
LGA    -       -      L      71           -
LGA    -       -      R      72           -
LGA    -       -      L      73           -
LGA    -       -      I      74           -
LGA    -       -      Y      75           -
LGA    -       -      A      76           -
LGA    -       -      L      77           -
LGA    -       -      G      78           -
LGA    -       -      K      79           -
LGA    -       -      M      80           -
LGA    -       -      D      81           -
LGA    -       -      K      82           -
LGA    -       -      W      83           -
LGA    -       -      L      84           -
LGA    -       -      Y      85           -
LGA    -       -      A      86           -
LGA    -       -      D      87           -
LGA    -       -      I      88           -
LGA    -       -      T      89           -
LGA    -       -      H      90           -
LGA    -       -      F      91           -
LGA    -       -      S      92           -
LGA    -       -      Q      93           -
LGA    -       -      Y      94           -
LGA    -       -      W      95           -
LGA    -       -      H      96           -
LGA    -       -      Y      97           -
LGA    -       -      L      98           -
LGA    -       -      N      99           -
LGA    -       -      E     100           -
LGA    -       -      Q     101           -
LGA    -       -      D     102           -
LGA    -       -      E     103           -
LGA    -       -      T     104           -
LGA    -       -      P     105           -
LGA    -       -      G     106           -
LGA    -       -      F     107           -
LGA    -       -      A     108           -
LGA    -       -      D     109           -
LGA    -       -      D     110           -
LGA    -       -      I     111           -
LGA    -       -      T     112           -
LGA    -       -      W     113           -
LGA    -       -      D     114           -
LGA    -       -      F     115           -
LGA    -       -      I     116           -
LGA    -       -      S     117           -
LGA    -       -      N     118           -
LGA    -       -      V     119           -
LGA    -       -      N     120           -
LGA    -       -      S     121           -
LGA    -       -      I     122           -
LGA    -       -      T     123           -
LGA    -       -      R     124           -
LGA    -       -      N     125           -
LGA    -       -      A     126           -
LGA    -       -      T     127           -
LGA    -       -      L     128           -
LGA    -       -      Y     129           -
LGA    -       -      D     130           -
LGA    -       -      A     131           -
LGA    -       -      L     132           -
LGA    -       -      K     133           -
LGA    -       -      A     134           -
LGA    -       -      M     135           -
LGA    -       -      K     136           -
LGA    -       -      F     137           -
LGA    -       -      A     138           -
LGA    -       -      D     139           -
LGA    -       -      F     140           -
LGA    T     157      A     141          2.291
LGA    -       -      V     142           -
LGA    L     158      W     143          1.091
LGA    A     159      S     144          3.939
LGA    -       -      E     145           -
LGA    -       -      A     146           -
LGA    -       -      R     147           -
LGA    V     160      F     148          1.640
LGA    T     161      S     149          0.967
LGA    T     162      G     150          1.087
LGA    T     163      M     151          1.169
LGA    L     164      V     152          0.850
LGA    K     165      K     153          0.924
LGA    E     166      T     154          1.281
LGA    L     167      A     155          1.380
LGA    T     168      L     156          1.045
LGA    P     169      T     157          2.446
LGA    -       -      L     158           -
LGA    -       -      A     159           -
LGA    -       -      V     160           -
LGA    -       -      T     161           -
LGA    -       -      T     162           -
LGA    -       -      T     163           -
LGA    -       -      L     164           -
LGA    -       -      K     165           -
LGA    -       -      E     166           -
LGA    -       -      L     167           -
LGA    -       -      T     168           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   13  166    5.0     13    1.76     7.69      7.311     0.698

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.931907 * X  +   0.316261 * Y  +  -0.177561 * Z  +  41.759613
  Y_new =  -0.243646 * X  +  -0.908519 * Y  +  -0.339456 * Z  +  18.219679
  Z_new =  -0.268674 * X  +  -0.273080 * Y  +   0.923711 * Z  +  34.002029 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.287446    2.854147  [ DEG:   -16.4694    163.5306 ]
  Theta =   0.272016    2.869577  [ DEG:    15.5854    164.4146 ]
  Phi   =  -2.885868    0.255724  [ DEG:  -165.3481     14.6519 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0361AL586_1                                  
REMARK     2: T0361.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0361AL586_1.T0361.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   13  166   5.0   13   1.76    7.69   7.311
REMARK  ---------------------------------------------------------- 
MOLECULE T0361AL586_1
REMARK Aligment from pdb entry: 1h97_A
ATOM      1  N   THR   157       2.087 -16.977  49.844  1.00  0.00              
ATOM      2  CA  THR   157       2.489 -16.898  48.423  1.00  0.00              
ATOM      3  C   THR   157       2.515 -15.410  48.103  1.00  0.00              
ATOM      4  O   THR   157       1.693 -14.641  48.696  1.00  0.00              
ATOM      5  N   LEU   158       3.388 -14.879  47.262  1.00  0.00              
ATOM      6  CA  LEU   158       3.406 -13.477  46.887  1.00  0.00              
ATOM      7  C   LEU   158       2.060 -13.144  46.245  1.00  0.00              
ATOM      8  O   LEU   158       1.479 -14.016  45.642  1.00  0.00              
ATOM      9  N   ALA   159       2.231  -7.911  43.867  1.00  0.00              
ATOM     10  CA  ALA   159       3.676  -8.000  43.950  1.00  0.00              
ATOM     11  C   ALA   159       4.299  -8.566  42.668  1.00  0.00              
ATOM     12  O   ALA   159       5.337  -8.028  42.229  1.00  0.00              
ATOM     13  N   VAL   160       3.654  -9.579  42.079  1.00  0.00              
ATOM     14  CA  VAL   160       4.118 -10.102  40.778  1.00  0.00              
ATOM     15  C   VAL   160       4.122  -8.961  39.750  1.00  0.00              
ATOM     16  O   VAL   160       5.111  -8.801  38.981  1.00  0.00              
ATOM     17  N   THR   161       3.059  -8.157  39.764  1.00  0.00              
ATOM     18  CA  THR   161       2.909  -7.072  38.758  1.00  0.00              
ATOM     19  C   THR   161       3.958  -6.018  38.996  1.00  0.00              
ATOM     20  O   THR   161       4.570  -5.520  38.012  1.00  0.00              
ATOM     21  N   THR   162       4.249  -5.666  40.260  1.00  0.00              
ATOM     22  CA  THR   162       5.262  -4.667  40.544  1.00  0.00              
ATOM     23  C   THR   162       6.638  -5.146  40.092  1.00  0.00              
ATOM     24  O   THR   162       7.407  -4.417  39.469  1.00  0.00              
ATOM     25  N   THR   163       6.968  -6.393  40.379  1.00  0.00              
ATOM     26  CA  THR   163       8.264  -6.960  40.000  1.00  0.00              
ATOM     27  C   THR   163       8.395  -6.952  38.462  1.00  0.00              
ATOM     28  O   THR   163       9.469  -6.624  37.975  1.00  0.00              
ATOM     29  N   LEU   164       7.387  -7.516  37.786  1.00  0.00              
ATOM     30  CA  LEU   164       7.513  -7.567  36.314  1.00  0.00              
ATOM     31  C   LEU   164       7.656  -6.172  35.757  1.00  0.00              
ATOM     32  O   LEU   164       8.448  -5.933  34.804  1.00  0.00              
ATOM     33  N   LYS   165       6.894  -5.174  36.230  1.00  0.00              
ATOM     34  CA  LYS   165       6.970  -3.800  35.730  1.00  0.00              
ATOM     35  C   LYS   165       8.313  -3.173  36.017  1.00  0.00              
ATOM     36  O   LYS   165       8.944  -2.645  35.077  1.00  0.00              
ATOM     37  N   GLU   166       8.852  -3.351  37.247  1.00  0.00              
ATOM     38  CA  GLU   166      10.083  -2.632  37.541  1.00  0.00              
ATOM     39  C   GLU   166      11.323  -3.339  36.999  1.00  0.00              
ATOM     40  O   GLU   166      12.346  -2.647  36.787  1.00  0.00              
ATOM     41  N   LEU   167      11.305  -4.635  36.806  1.00  0.00              
ATOM     42  CA  LEU   167      12.444  -5.324  36.226  1.00  0.00              
ATOM     43  C   LEU   167      12.338  -5.406  34.696  1.00  0.00              
ATOM     44  O   LEU   167      13.337  -5.731  34.055  1.00  0.00              
ATOM     45  N   THR   168      11.199  -5.035  34.123  1.00  0.00              
ATOM     46  CA  THR   168      10.992  -5.124  32.700  1.00  0.00              
ATOM     47  C   THR   168      12.104  -4.574  31.839  1.00  0.00              
ATOM     48  O   THR   168      12.571  -5.250  30.914  1.00  0.00              
ATOM     49  N   PRO   169      12.618  -3.371  32.102  1.00  0.00              
ATOM     50  CA  PRO   169      13.672  -2.785  31.268  1.00  0.00              
ATOM     51  C   PRO   169      15.015  -3.488  31.391  1.00  0.00              
ATOM     52  O   PRO   169      15.988  -3.174  30.661  1.00  0.00              
END
