
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  158 (  158),  selected  158 , name T0361TS599_5-D1
# Molecule2: number of CA atoms  158 ( 1268),  selected  158 , name T0361_D1.pdb
# PARAMETERS: T0361TS599_5-D1.T0361_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      T       3           -
LGA    -       -      L       4           -
LGA    -       -      T       5           -
LGA    -       -      E       6           -
LGA    T       3      D       7           #
LGA    L       4      D       8           -
LGA    T       5      V       9           -
LGA    E       6      L      10           #
LGA    D       7      E      11           -
LGA    D       8      Q      12           -
LGA    -       -      L      13           -
LGA    V       9      D      14          3.411
LGA    L      10      A      15           #
LGA    E      11      -       -           -
LGA    Q      12      -       -           -
LGA    L      13      Q      16          2.464
LGA    D      14      D      17          2.400
LGA    A      15      -       -           -
LGA    Q      16      -       -           -
LGA    D      17      -       -           -
LGA    N      18      -       -           -
LGA    L      19      N      18           #
LGA    F      20      L      19          4.675
LGA    S      21      F      20          4.225
LGA    F      22      -       -           -
LGA    M      23      S      21          3.076
LGA    K      24      F      22           -
LGA    T      25      -       -           -
LGA    A      26      M      23          5.863
LGA    H      27      K      24           #
LGA    S      28      T      25           -
LGA    I      29      A      26           -
LGA    L      30      H      27           #
LGA    L      31      S      28           -
LGA    Q      32      I      29           -
LGA    G      33      L      30           -
LGA    I      34      L      31           -
LGA    R      35      Q      32           -
LGA    Q      36      G      33           -
LGA    F      37      I      34           -
LGA    L      38      R      35           -
LGA    P      39      Q      36           -
LGA    S      40      F      37           -
LGA    L      41      L      38           -
LGA    F      42      P      39           -
LGA    V      43      S      40           -
LGA    D      44      L      41           -
LGA    N      45      F      42           -
LGA    D      46      V      43           -
LGA    E      47      D      44           -
LGA    E      48      N      45           -
LGA    I      49      D      46           -
LGA    V      50      E      47           -
LGA    E      51      E      48           -
LGA    Y      52      I      49           -
LGA    A      53      V      50           -
LGA    V      54      E      51           -
LGA    K      55      Y      52           -
LGA    P      56      A      53           -
LGA    L      57      V      54           -
LGA    L      58      K      55           -
LGA    A      59      P      56           -
LGA    Q      60      L      57           -
LGA    S      61      L      58           -
LGA    G      62      A      59           -
LGA    P      63      Q      60           -
LGA    -       -      S      61           -
LGA    -       -      G      62           -
LGA    -       -      P      63           -
LGA    -       -      L      64           -
LGA    -       -      D      65           -
LGA    -       -      D      66           -
LGA    -       -      I      67           -
LGA    -       -      D      68           -
LGA    -       -      V      69           -
LGA    -       -      A      70           -
LGA    -       -      L      71           -
LGA    -       -      R      72           -
LGA    -       -      L      73           -
LGA    -       -      I      74           -
LGA    -       -      Y      75           -
LGA    -       -      A      76           -
LGA    -       -      L      77           -
LGA    -       -      G      78           -
LGA    -       -      K      79           -
LGA    -       -      M      80           -
LGA    -       -      D      81           -
LGA    -       -      K      82           -
LGA    -       -      W      83           -
LGA    -       -      L      84           -
LGA    -       -      Y      85           -
LGA    -       -      A      86           -
LGA    L      64      D      87          3.323
LGA    D      65      I      88          1.219
LGA    D      66      T      89          4.540
LGA    I      67      H      90           -
LGA    D      68      F      91           -
LGA    V      69      S      92           -
LGA    A      70      Q      93           -
LGA    L      71      Y      94           -
LGA    R      72      W      95           -
LGA    L      73      H      96           -
LGA    I      74      Y      97           -
LGA    Y      75      L      98           -
LGA    A      76      N      99           -
LGA    L      77      E     100           -
LGA    G      78      Q     101           -
LGA    K      79      D     102           -
LGA    M      80      E     103           -
LGA    D      81      T     104           -
LGA    K      82      P     105           -
LGA    W      83      G     106           -
LGA    L      84      F     107           -
LGA    Y      85      A     108           -
LGA    A      86      D     109           -
LGA    D      87      D     110           -
LGA    I      88      I     111           -
LGA    T      89      T     112           -
LGA    H      90      W     113           -
LGA    F      91      D     114           -
LGA    S      92      F     115           -
LGA    Q      93      I     116           -
LGA    Y      94      S     117           -
LGA    W      95      N     118           -
LGA    H      96      V     119           -
LGA    Y      97      -       -           -
LGA    L      98      -       -           -
LGA    N      99      -       -           -
LGA    E     100      -       -           -
LGA    Q     101      -       -           -
LGA    D     102      -       -           -
LGA    E     103      -       -           -
LGA    T     104      -       -           -
LGA    P     105      -       -           -
LGA    G     106      -       -           -
LGA    F     107      -       -           -
LGA    A     108      -       -           -
LGA    D     109      -       -           -
LGA    D     110      -       -           -
LGA    I     111      -       -           -
LGA    T     112      -       -           -
LGA    W     113      -       -           -
LGA    D     114      -       -           -
LGA    F     115      -       -           -
LGA    I     116      -       -           -
LGA    S     117      -       -           -
LGA    N     118      -       -           -
LGA    V     119      N     120           #
LGA    N     120      S     121          3.338
LGA    S     121      -       -           -
LGA    I     122      I     122           #
LGA    T     123      T     123          4.028
LGA    R     124      R     124          2.620
LGA    N     125      N     125          3.053
LGA    A     126      A     126          3.216
LGA    T     127      T     127          1.034
LGA    L     128      L     128          3.181
LGA    Y     129      Y     129          2.433
LGA    D     130      D     130          0.865
LGA    A     131      A     131          3.050
LGA    L     132      L     132          3.373
LGA    K     133      K     133          1.555
LGA    A     134      A     134          1.920
LGA    M     135      M     135          3.142
LGA    K     136      K     136          2.575
LGA    -       -      E     145           -
LGA    -       -      A     146           -
LGA    -       -      R     147           -
LGA    -       -      F     148           -
LGA    -       -      S     149           -
LGA    -       -      G     150           -
LGA    -       -      M     151           -
LGA    E     145      V     152          1.126
LGA    A     146      K     153          1.201
LGA    R     147      T     154          1.371
LGA    F     148      A     155          1.319
LGA    S     149      L     156          1.301
LGA    G     150      T     157          1.120
LGA    M     151      L     158          1.311
LGA    V     152      A     159          1.501
LGA    K     153      V     160          0.715
LGA    T     154      T     161          1.159
LGA    A     155      T     162          1.258
LGA    L     156      T     163          1.097
LGA    T     157      L     164          1.092
LGA    L     158      K     165          1.147
LGA    A     159      E     166          1.089
LGA    V     160      L     167          1.238
LGA    T     161      T     168          2.443
LGA    T     162      -       -           -
LGA    T     163      -       -           -
LGA    L     164      -       -           -
LGA    K     165      -       -           -
LGA    E     166      -       -           -
LGA    L     167      -       -           -
LGA    T     168      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  158  158    5.0     42    2.60    40.48     19.647     1.555

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.659698 * X  +  -0.190873 * Y  +  -0.726888 * Z  +  14.708238
  Y_new =  -0.571962 * X  +   0.499893 * Y  +  -0.650359 * Z  +  -3.287986
  Z_new =   0.487502 * X  +   0.844793 * Y  +   0.220606 * Z  +  23.508457 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.315364   -1.826229  [ DEG:    75.3648   -104.6352 ]
  Theta =  -0.509226   -2.632367  [ DEG:   -29.1765   -150.8235 ]
  Phi   =  -0.714284    2.427309  [ DEG:   -40.9255    139.0745 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0361TS599_5-D1                               
REMARK     2: T0361_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0361TS599_5-D1.T0361_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  158  158   5.0   42   2.60   40.48  19.647
REMARK  ---------------------------------------------------------- 
MOLECULE T0361TS599_5-D1
PFRMAT TS                                                                       
TARGET T0361                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      3  CA  THR     3       9.205  13.949  38.023  1.00  0.00              
ATOM      4  CA  LEU     4       7.633  10.772  38.555  1.00  0.00              
ATOM      5  CA  THR     5       9.259   8.176  40.769  1.00  0.00              
ATOM      6  CA  GLU     6       9.973   4.618  39.807  1.00  0.00              
ATOM      7  CA  ASP     7       7.173   3.392  41.990  1.00  0.00              
ATOM      8  CA  ASP     8       4.540   5.807  40.794  1.00  0.00              
ATOM      9  CA  VAL     9       5.149   5.304  37.113  1.00  0.00              
ATOM     10  CA  LEU    10       5.075   1.551  37.416  1.00  0.00              
ATOM     11  CA  GLU    11       1.880   1.632  39.364  1.00  0.00              
ATOM     12  CA  GLN    12       0.077   3.933  36.926  1.00  0.00              
ATOM     13  CA  LEU    13       1.161   1.883  33.859  1.00  0.00              
ATOM     14  CA  ASP    14       0.058  -1.294  35.542  1.00  0.00              
ATOM     15  CA  ALA    15      -3.395   0.145  36.459  1.00  0.00              
ATOM     16  CA  GLN    16      -4.459   1.806  33.247  1.00  0.00              
ATOM     17  CA  ASP    17      -6.591  -0.540  31.209  1.00  0.00              
ATOM     18  CA  ASN    18      -6.198   1.421  27.988  1.00  0.00              
ATOM     19  CA  LEU    19      -2.374   1.494  28.201  1.00  0.00              
ATOM     20  CA  PHE    20      -2.157  -2.272  28.762  1.00  0.00              
ATOM     21  CA  SER    21      -4.190  -2.935  25.595  1.00  0.00              
ATOM     22  CA  PHE    22      -1.977  -0.620  23.528  1.00  0.00              
ATOM     23  CA  MET    23       1.030  -2.556  24.851  1.00  0.00              
ATOM     24  CA  LYS    24      -0.346  -6.010  24.032  1.00  0.00              
ATOM     25  CA  THR    25      -1.390  -5.393  20.432  1.00  0.00              
ATOM     26  CA  ALA    26       1.985  -3.713  20.027  1.00  0.00              
ATOM     27  CA  HIS    27       3.860  -6.758  21.374  1.00  0.00              
ATOM     28  CA  SER    28       2.298  -8.888  18.709  1.00  0.00              
ATOM     29  CA  ILE    29       3.496  -6.374  16.086  1.00  0.00              
ATOM     30  CA  LEU    30       6.954  -6.579  17.609  1.00  0.00              
ATOM     31  CA  LEU    31       7.159 -10.373  17.257  1.00  0.00              
ATOM     32  CA  GLN    32       6.079 -10.132  13.629  1.00  0.00              
ATOM     33  CA  GLY    33       8.559  -7.310  12.961  1.00  0.00              
ATOM     34  CA  ILE    34      11.541  -9.127  14.449  1.00  0.00              
ATOM     35  CA  ARG    35      10.676 -12.134  12.340  1.00  0.00              
ATOM     36  CA  GLN    36      10.753  -9.980   9.241  1.00  0.00              
ATOM     37  CA  PHE    37      14.116  -8.505  10.195  1.00  0.00              
ATOM     38  CA  LEU    38      15.691 -11.944  10.843  1.00  0.00              
ATOM     39  CA  PRO    39      14.474 -13.262   7.524  1.00  0.00              
ATOM     40  CA  SER    40      15.798 -10.218   5.585  1.00  0.00              
ATOM     41  CA  LEU    41      19.189 -10.361   7.266  1.00  0.00              
ATOM     42  CA  PHE    42      19.416 -14.086   6.471  1.00  0.00              
ATOM     43  CA  VAL    43      18.500 -13.877   2.782  1.00  0.00              
ATOM     44  CA  ASP    44      20.625 -10.954   1.473  1.00  0.00              
ATOM     45  CA  ASN    45      23.371 -12.831  -0.238  1.00  0.00              
ATOM     46  CA  ASP    46      26.389 -11.410   1.530  1.00  0.00              
ATOM     47  CA  GLU    47      24.922 -11.157   4.980  1.00  0.00              
ATOM     48  CA  GLU    48      26.846 -13.860   6.791  1.00  0.00              
ATOM     49  CA  ILE    49      27.819 -12.407  10.176  1.00  0.00              
ATOM     50  CA  VAL    50      24.446 -10.717  10.622  1.00  0.00              
ATOM     51  CA  GLU    51      22.139 -13.593   9.559  1.00  0.00              
ATOM     52  CA  TYR    52      24.169 -16.092  11.538  1.00  0.00              
ATOM     53  CA  ALA    53      24.151 -13.933  14.621  1.00  0.00              
ATOM     54  CA  VAL    54      20.475 -13.300  14.558  1.00  0.00              
ATOM     55  CA  LYS    55      19.414 -16.914  14.141  1.00  0.00              
ATOM     56  CA  PRO    56      21.526 -18.031  17.092  1.00  0.00              
ATOM     57  CA  LEU    57      20.142 -15.209  19.209  1.00  0.00              
ATOM     58  CA  LEU    58      16.488 -15.855  18.391  1.00  0.00              
ATOM     59  CA  ALA    59      16.863 -19.564  19.189  1.00  0.00              
ATOM     60  CA  GLN    60      18.819 -19.548  22.476  1.00  0.00              
ATOM     61  CA  SER    61      16.474 -17.528  24.577  1.00  0.00              
ATOM     62  CA  GLY    62      18.310 -14.177  24.925  1.00  0.00              
ATOM     63  CA  PRO    63      16.070 -11.907  22.997  1.00  0.00              
ATOM     64  CA  LEU    64      16.990 -10.221  19.751  1.00  0.00              
ATOM     65  CA  ASP    65      16.040  -6.659  20.662  1.00  0.00              
ATOM     66  CA  ASP    66      14.984  -5.199  17.340  1.00  0.00              
ATOM     67  CA  ILE    67      12.011  -2.925  18.197  1.00  0.00              
ATOM     68  CA  ASP    68      10.470  -0.199  16.102  1.00  0.00              
ATOM     69  CA  VAL    69       6.745  -0.872  16.662  1.00  0.00              
ATOM     70  CA  ALA    70       7.450  -1.016  20.378  1.00  0.00              
ATOM     71  CA  LEU    71       8.932   2.487  20.763  1.00  0.00              
ATOM     72  CA  ARG    72       6.060   4.165  18.816  1.00  0.00              
ATOM     73  CA  LEU    73       3.456   2.278  20.868  1.00  0.00              
ATOM     74  CA  ILE    74       4.469   2.557  24.544  1.00  0.00              
ATOM     75  CA  TYR    75       5.143   6.266  24.123  1.00  0.00              
ATOM     76  CA  ALA    76       1.951   7.034  22.234  1.00  0.00              
ATOM     77  CA  LEU    77      -0.171   5.157  24.777  1.00  0.00              
ATOM     78  CA  GLY    78       0.880   7.128  27.776  1.00  0.00              
ATOM     79  CA  LYS    79       3.251   4.837  29.591  1.00  0.00              
ATOM     80  CA  MET    80       6.469   6.483  28.584  1.00  0.00              
ATOM     81  CA  ASP    81       8.290   8.901  30.778  1.00  0.00              
ATOM     82  CA  LYS    82       9.493  12.033  29.099  1.00  0.00              
ATOM     83  CA  TRP    83      13.239  11.271  29.423  1.00  0.00              
ATOM     84  CA  LEU    84      12.842   7.799  28.002  1.00  0.00              
ATOM     85  CA  TYR    85      10.658   9.032  25.154  1.00  0.00              
ATOM     86  CA  ALA    86      13.505  11.300  24.066  1.00  0.00              
ATOM     87  CA  ASP    87      15.898   8.354  23.917  1.00  0.00              
ATOM     88  CA  ILE    88      13.516   6.290  21.830  1.00  0.00              
ATOM     89  CA  THR    89      13.331   9.093  19.260  1.00  0.00              
ATOM     90  CA  HIS    90      17.130   9.056  18.890  1.00  0.00              
ATOM     91  CA  PHE    91      17.213   5.292  18.397  1.00  0.00              
ATOM     92  CA  SER    92      14.488   5.635  15.780  1.00  0.00              
ATOM     93  CA  GLN    93      16.730   8.144  14.003  1.00  0.00              
ATOM     94  CA  TYR    94      19.821   5.892  14.066  1.00  0.00              
ATOM     95  CA  TRP    95      17.825   3.035  12.686  1.00  0.00              
ATOM     96  CA  HIS    96      16.688   5.317   9.831  1.00  0.00              
ATOM     97  CA  TYR    97      20.301   6.365   9.165  1.00  0.00              
ATOM     98  CA  LEU    98      21.528   2.789   9.146  1.00  0.00              
ATOM     99  CA  ASN    99      18.726   1.707   6.843  1.00  0.00              
ATOM    100  CA  GLU   100      19.292   4.490   4.287  1.00  0.00              
ATOM    101  CA  GLN   101      23.024   4.554   3.832  1.00  0.00              
ATOM    102  CA  ASP   102      23.560   8.292   3.602  1.00  0.00              
ATOM    103  CA  GLU   103      25.614   8.457   6.799  1.00  0.00              
ATOM    104  CA  THR   104      27.845   5.510   5.967  1.00  0.00              
ATOM    105  CA  PRO   105      28.510   3.430   9.116  1.00  0.00              
ATOM    106  CA  GLY   106      30.118   0.068   8.947  1.00  0.00              
ATOM    107  CA  PHE   107      28.960  -1.755  12.160  1.00  0.00              
ATOM    108  CA  ALA   108      31.347  -4.644  12.379  1.00  0.00              
ATOM    109  CA  ASP   109      29.430  -7.917  13.004  1.00  0.00              
ATOM    110  CA  ASP   110      31.369  -8.815  16.109  1.00  0.00              
ATOM    111  CA  ILE   111      30.858  -5.470  17.891  1.00  0.00              
ATOM    112  CA  THR   112      27.095  -5.643  17.745  1.00  0.00              
ATOM    113  CA  TRP   113      26.956  -9.252  19.025  1.00  0.00              
ATOM    114  CA  ASP   114      29.220  -8.457  21.901  1.00  0.00              
ATOM    115  CA  PHE   115      27.162  -5.498  22.948  1.00  0.00              
ATOM    116  CA  ILE   116      23.933  -7.545  22.818  1.00  0.00              
ATOM    117  CA  SER   117      25.494 -10.318  24.843  1.00  0.00              
ATOM    118  CA  ASN   118      26.484  -7.782  27.527  1.00  0.00              
ATOM    119  CA  VAL   119      22.880  -6.719  28.012  1.00  0.00              
ATOM    120  CA  ASN   120      21.624 -10.289  28.366  1.00  0.00              
ATOM    121  CA  SER   121      24.285 -11.118  30.936  1.00  0.00              
ATOM    122  CA  ILE   122      23.533  -8.145  33.246  1.00  0.00              
ATOM    123  CA  THR   123      19.858  -8.940  33.407  1.00  0.00              
ATOM    124  CA  ARG   124      20.154 -12.677  33.934  1.00  0.00              
ATOM    125  CA  ASN   125      22.712 -12.287  36.710  1.00  0.00              
ATOM    126  CA  ALA   126      21.162  -9.493  38.750  1.00  0.00              
ATOM    127  CA  THR   127      20.648 -10.959  42.187  1.00  0.00              
ATOM    128  CA  LEU   128      17.193  -9.538  42.883  1.00  0.00              
ATOM    129  CA  TYR   129      15.478 -11.390  40.036  1.00  0.00              
ATOM    130  CA  ASP   130      16.458 -14.771  41.366  1.00  0.00              
ATOM    131  CA  ALA   131      15.237 -14.111  44.907  1.00  0.00              
ATOM    132  CA  LEU   132      11.922 -12.625  43.786  1.00  0.00              
ATOM    133  CA  LYS   133      11.227 -15.368  41.243  1.00  0.00              
ATOM    134  CA  ALA   134      11.639 -17.864  44.112  1.00  0.00              
ATOM    135  CA  MET   135       9.061 -16.111  46.327  1.00  0.00              
ATOM    136  CA  LYS   136       5.956 -16.233  44.098  1.00  0.00              
ATOM    145  CA  GLU   145       9.404  -7.759  35.948  1.00  0.00              
ATOM    146  CA  ALA   146       8.809  -4.056  35.309  1.00  0.00              
ATOM    147  CA  ARG   147      12.276  -3.057  36.537  1.00  0.00              
ATOM    148  CA  PHE   148      14.094  -5.629  34.449  1.00  0.00              
ATOM    149  CA  SER   149      12.272  -4.662  31.300  1.00  0.00              
ATOM    150  CA  GLY   150      13.002  -0.936  31.734  1.00  0.00              
ATOM    151  CA  MET   151      16.675  -1.615  32.330  1.00  0.00              
ATOM    152  CA  VAL   152      16.885  -3.845  29.230  1.00  0.00              
ATOM    153  CA  LYS   153      15.176  -1.311  27.049  1.00  0.00              
ATOM    154  CA  THR   154      17.633   1.348  28.348  1.00  0.00              
ATOM    155  CA  ALA   155      20.590  -0.931  27.737  1.00  0.00              
ATOM    156  CA  LEU   156      19.581  -1.714  24.192  1.00  0.00              
ATOM    157  CA  THR   157      19.117   1.959  23.328  1.00  0.00              
ATOM    158  CA  LEU   158      22.565   2.717  24.789  1.00  0.00              
ATOM    159  CA  ALA   159      24.373  -0.032  23.015  1.00  0.00              
ATOM    160  CA  VAL   160      23.003   0.736  19.590  1.00  0.00              
ATOM    161  CA  THR   161      23.796   4.436  19.822  1.00  0.00              
ATOM    162  CA  THR   162      27.370   3.673  20.947  1.00  0.00              
ATOM    163  CA  THR   163      27.962   1.220  18.137  1.00  0.00              
ATOM    164  CA  LEU   164      26.684   3.623  15.523  1.00  0.00              
ATOM    165  CA  LYS   165      28.858   6.525  16.778  1.00  0.00              
ATOM    166  CA  GLU   166      31.961   4.323  16.739  1.00  0.00              
ATOM    167  CA  LEU   167      31.154   3.081  13.046  1.00  0.00              
ATOM    168  CA  THR   168      29.881   6.837  11.635  1.00  0.00              
TER                                                                             
END
