
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   37 (  183),  selected   37 , name T0363TS102_1-D1
# Molecule2: number of CA atoms   46 (  372),  selected   46 , name T0363_D1.pdb
# PARAMETERS: T0363TS102_1-D1.T0363_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      N      11           -
LGA    -       -      Q      12           -
LGA    -       -      I      13           -
LGA    -       -      N      14           -
LGA    -       -      I      15           -
LGA    A      18      E      16          4.947
LGA    Y      19      I      17          3.198
LGA    -       -      A      18           -
LGA    -       -      Y      19           -
LGA    -       -      A      20           -
LGA    -       -      F      21           -
LGA    -       -      P      22           -
LGA    -       -      E      23           -
LGA    -       -      R      24           -
LGA    -       -      Y      25           -
LGA    -       -      Y      26           -
LGA    -       -      L      27           -
LGA    A      20      K      28           #
LGA    F      21      S      29          3.164
LGA    P      22      F      30          3.603
LGA    E      23      -       -           -
LGA    R      24      -       -           -
LGA    Y      25      -       -           -
LGA    L      27      Q      31          3.466
LGA    K      28      -       -           -
LGA    S      29      -       -           -
LGA    F      30      -       -           -
LGA    Q      31      -       -           -
LGA    V      32      V      32          3.583
LGA    D      33      D      33          1.637
LGA    E      34      E      34          3.316
LGA    G      35      G      35          5.322
LGA    I      36      I      36          2.325
LGA    T      37      T      37          0.513
LGA    V      38      V      38          3.802
LGA    Q      39      Q      39          2.481
LGA    -       -      T      40           -
LGA    -       -      A      41           -
LGA    T      40      I      42          1.531
LGA    A      41      T      43          3.856
LGA    -       -      Q      44           -
LGA    -       -      S      45           -
LGA    -       -      G      46           -
LGA    -       -      I      47           -
LGA    I      42      L      48          1.192
LGA    T      43      S      49          0.941
LGA    Q      44      Q      50          2.303
LGA    S      45      F      51          2.109
LGA    G      46      P      52          1.681
LGA    -       -      E      53           -
LGA    I      47      I      54          1.520
LGA    -       -      D      55           -
LGA    L      48      L      56          3.334
LGA    S      49      -       -           -
LGA    Q      50      -       -           -
LGA    F      51      -       -           -
LGA    E      53      -       -           -
LGA    I      54      -       -           -
LGA    D      55      -       -           -
LGA    L      56      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   37   46    5.0     22    2.99    50.00     31.753     0.713

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.153034 * X  +   0.459315 * Y  +  -0.874991 * Z  +  25.231676
  Y_new =   0.985082 * X  +  -0.141414 * Y  +   0.098055 * Z  + -45.101700
  Z_new =  -0.078698 * X  +  -0.876944 * Y  +  -0.474105 * Z  +  63.912449 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.066419    1.075173  [ DEG:  -118.3971     61.6029 ]
  Theta =   0.078780    3.062813  [ DEG:     4.5137    175.4863 ]
  Phi   =   1.416677   -1.724916  [ DEG:    81.1696    -98.8304 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0363TS102_1-D1                               
REMARK     2: T0363_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0363TS102_1-D1.T0363_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   37   46   5.0   22   2.99   50.00  31.753
REMARK  ---------------------------------------------------------- 
MOLECULE T0363TS102_1-D1
PFRMAT TS
TARGET T0363
MODEL 1
PARENT 1aw8_B
ATOM      1  N   ALA    18      22.654  17.544   9.496  1.00  1.00
ATOM      2  CA  ALA    18      22.011  16.393   8.849  1.00  1.00
ATOM      3  C   ALA    18      22.618  15.966   7.521  1.00  1.00
ATOM      4  O   ALA    18      23.196  16.776   6.810  1.00  1.00
ATOM      5  CB  ALA    18      20.533  16.700   8.619  1.00  1.00
ATOM      6  N   TYR    19      22.609  14.674   7.277  1.00  1.00
ATOM      7  CA  TYR    19      22.986  14.089   6.031  1.00  1.00
ATOM      8  C   TYR    19      21.975  13.009   5.703  1.00  1.00
ATOM      9  O   TYR    19      21.863  12.014   6.421  1.00  1.00
ATOM     10  CB  TYR    19      24.382  13.503   6.137  1.00  1.00
ATOM     11  N   ALA    20      21.088  13.317   4.755  1.00  1.00
ATOM     12  CA  ALA    20      20.058  12.393   4.310  1.00  1.00
ATOM     13  C   ALA    20      20.788  11.487   3.344  1.00  1.00
ATOM     14  O   ALA    20      21.534  11.964   2.489  1.00  1.00
ATOM     15  CB  ALA    20      18.935  13.148   3.593  1.00  1.00
ATOM     16  N   PHE    21      20.612  10.184   3.507  1.00  1.00
ATOM     17  CA  PHE    21      21.279   9.207   2.659  1.00  1.00
ATOM     18  C   PHE    21      20.265   8.177   2.181  1.00  1.00
ATOM     19  O   PHE    21      19.469   7.667   2.972  1.00  1.00
ATOM     20  CB  PHE    21      22.373   8.462   3.452  1.00  1.00
ATOM     21  N   PRO    22      20.277   7.897   0.883  1.00  1.00
ATOM     22  CA  PRO    22      19.374   6.914   0.302  1.00  1.00
ATOM     23  C   PRO    22      19.362   5.663   1.199  1.00  1.00
ATOM     24  O   PRO    22      20.402   5.046   1.434  1.00  1.00
ATOM     25  CB  PRO    22      19.864   6.580  -1.113  1.00  1.00
ATOM     26  N   GLU    23      18.172   5.291   1.674  1.00  1.00
ATOM     27  CA  GLU    23      17.984   4.131   2.549  1.00  1.00
ATOM     28  C   GLU    23      18.691   2.858   2.069  1.00  1.00
ATOM     29  O   GLU    23      19.127   2.046   2.879  1.00  1.00
ATOM     30  CB  GLU    23      16.486   3.868   2.751  1.00  1.00
ATOM     31  N   ARG    24      18.781   2.672   0.756  1.00  1.00
ATOM     32  CA  ARG    24      19.465   1.511   0.194  1.00  1.00
ATOM     33  C   ARG    24      20.947   1.576   0.557  1.00  1.00
ATOM     34  O   ARG    24      21.570   0.554   0.829  1.00  1.00
ATOM     35  CB  ARG    24      19.350   1.483  -1.340  1.00  1.00
ATOM     36  N   TYR    25      21.519   2.779   0.532  1.00  1.00
ATOM     37  CA  TYR    25      22.932   2.950   0.856  1.00  1.00
ATOM     38  C   TYR    25      23.143   2.636   2.330  1.00  1.00
ATOM     39  O   TYR    25      24.104   1.961   2.694  1.00  1.00
ATOM     40  CB  TYR    25      23.406   4.373   0.561  1.00  1.00
ATOM     41  N   LEU    27      22.234   3.107   3.177  1.00  1.00
ATOM     42  CA  LEU    27      22.329   2.854   4.611  1.00  1.00
ATOM     43  C   LEU    27      22.266   1.347   4.875  1.00  1.00
ATOM     44  O   LEU    27      23.028   0.817   5.698  1.00  1.00
ATOM     45  CB  LEU    27      21.207   3.566   5.373  1.00  1.00
ATOM     46  N   LYS    28      21.394   0.657   4.140  1.00  1.00
ATOM     47  CA  LYS    28      21.236  -0.792   4.270  1.00  1.00
ATOM     48  C   LYS    28      22.525  -1.538   3.926  1.00  1.00
ATOM     49  O   LYS    28      22.919  -2.462   4.633  1.00  1.00
ATOM     50  CB  LYS    28      20.104  -1.299   3.360  1.00  1.00
ATOM     51  N   SER    29      23.173  -1.138   2.836  1.00  1.00
ATOM     52  CA  SER    29      24.412  -1.771   2.402  1.00  1.00
ATOM     53  C   SER    29      25.555  -1.577   3.390  1.00  1.00
ATOM     54  O   SER    29      26.404  -2.450   3.543  1.00  1.00
ATOM     55  CB  SER    29      24.818  -1.246   1.045  1.00  1.00
ATOM     56  N   PHE    30      25.609  -0.410   4.018  1.00  1.00
ATOM     57  CA  PHE    30      26.668  -0.124   4.974  1.00  1.00
ATOM     58  C   PHE    30      26.293  -0.502   6.405  1.00  1.00
ATOM     59  O   PHE    30      27.119  -0.395   7.305  1.00  1.00
ATOM     60  CB  PHE    30      27.061   1.346   4.898  1.00  1.00
ATOM     61  N   GLN    31      25.052  -0.928   6.618  1.00  1.00
ATOM     62  CA  GLN    31      24.613  -1.307   7.953  1.00  1.00
ATOM     63  C   GLN    31      24.378  -0.113   8.866  1.00  1.00
ATOM     64  O   GLN    31      24.252  -0.270  10.080  1.00  1.00
ATOM     65  CB  GLN    31      25.721  -2.171   8.585  1.00  1.00
ATOM     66  N   VAL    32      24.265   1.072   8.273  1.00  1.00
ATOM     67  CA  VAL    32      24.066   2.312   9.026  1.00  1.00
ATOM     68  C   VAL    32      22.583   2.555   9.327  1.00  1.00
ATOM     69  O   VAL    32      21.732   2.386   8.464  1.00  1.00
ATOM     70  CB  VAL    32      24.685   3.532   8.264  1.00  1.00
ATOM     71  N   ASP    33      22.288   2.958  10.559  1.00  1.00
ATOM     72  CA  ASP    33      20.920   3.211  11.008  1.00  1.00
ATOM     73  C   ASP    33      20.571   4.686  10.973  1.00  1.00
ATOM     74  O   ASP    33      21.446   5.552  11.048  1.00  1.00
ATOM     75  CB  ASP    33      20.733   2.734  12.449  1.00  1.00
ATOM     76  N   GLU    34      19.279   4.969  10.915  1.00  1.00
ATOM     77  CA  GLU    34      18.826   6.341  10.918  1.00  1.00
ATOM     78  C   GLU    34      19.053   6.823  12.346  1.00  1.00
ATOM     79  O   GLU    34      18.834   6.071  13.300  1.00  1.00
ATOM     80  CB  GLU    34      17.346   6.428  10.556  1.00  1.00
ATOM     81  N   GLY    35      19.530   8.057  12.467  1.00  1.00
ATOM     82  CA  GLY    35      19.830   8.695  13.745  1.00  1.00
ATOM     83  C   GLY    35      21.165   8.253  14.328  1.00  1.00
ATOM     84  O   GLY    35      21.566   8.718  15.398  1.00  1.00
ATOM     85  N   ILE    36      21.873   7.386  13.610  1.00  1.00
ATOM     86  CA  ILE    36      23.174   6.923  14.069  1.00  1.00
ATOM     87  C   ILE    36      24.235   7.972  13.734  1.00  1.00
ATOM     88  O   ILE    36      24.165   8.634  12.693  1.00  1.00
ATOM     89  CB  ILE    36      23.533   5.580  13.417  1.00  1.00
ATOM     90  N   THR    37      25.181   8.151  14.646  1.00  1.00
ATOM     91  CA  THR    37      26.274   9.089  14.455  1.00  1.00
ATOM     92  C   THR    37      27.161   8.601  13.313  1.00  1.00
ATOM     93  O   THR    37      27.495   7.419  13.245  1.00  1.00
ATOM     94  CB  THR    37      27.090   9.194  15.731  1.00  1.00
ATOM     95  N   VAL    38      27.547   9.514  12.427  1.00  1.00
ATOM     96  CA  VAL    38      28.405   9.177  11.300  1.00  1.00
ATOM     97  C   VAL    38      29.523  10.212  11.139  1.00  1.00
ATOM     98  O   VAL    38      29.378  11.374  11.542  1.00  1.00
ATOM     99  CB  VAL    38      27.613   9.125   9.972  1.00  1.00
ATOM    100  N   GLN    39      30.656   9.768  10.603  1.00  1.00
ATOM    101  CA  GLN    39      31.795  10.645  10.331  1.00  1.00
ATOM    102  C   GLN    39      31.818  10.796   8.828  1.00  1.00
ATOM    103  O   GLN    39      31.654   9.807   8.101  1.00  1.00
ATOM    104  CB  GLN    39      33.127  10.005  10.747  1.00  1.00
ATOM    105  N   THR    40      32.002  12.025   8.363  1.00  1.00
ATOM    106  CA  THR    40      32.066  12.297   6.939  1.00  1.00
ATOM    107  C   THR    40      33.436  12.888   6.627  1.00  1.00
ATOM    108  O   THR    40      33.837  13.898   7.195  1.00  1.00
ATOM    109  CB  THR    40      30.945  13.253   6.493  1.00  1.00
ATOM    110  N   ALA    41      34.168  12.209   5.756  1.00  1.00
ATOM    111  CA  ALA    41      35.499  12.636   5.361  1.00  1.00
ATOM    112  C   ALA    41      35.448  13.055   3.895  1.00  1.00
ATOM    113  O   ALA    41      35.154  12.244   3.016  1.00  1.00
ATOM    114  CB  ALA    41      36.484  11.488   5.602  1.00  1.00
ATOM    115  N   ILE    42      35.646  14.347   3.655  1.00  1.00
ATOM    116  CA  ILE    42      35.600  14.919   2.313  1.00  1.00
ATOM    117  C   ILE    42      36.906  14.707   1.545  1.00  1.00
ATOM    118  O   ILE    42      37.942  15.303   1.871  1.00  1.00
ATOM    119  CB  ILE    42      35.282  16.409   2.423  1.00  1.00
ATOM    120  N   THR    43      36.857  13.850   0.531  1.00  1.00
ATOM    121  CA  THR    43      38.033  13.555  -0.279  1.00  1.00
ATOM    122  C   THR    43      38.417  14.775  -1.108  1.00  1.00
ATOM    123  O   THR    43      39.601  15.035  -1.330  1.00  1.00
ATOM    124  CB  THR    43      37.785  12.355  -1.237  1.00  1.00
ATOM    125  N   GLN    44      37.414  15.542  -1.521  1.00  1.00
ATOM    126  CA  GLN    44      37.627  16.732  -2.340  1.00  1.00
ATOM    127  C   GLN    44      38.327  17.883  -1.621  1.00  1.00
ATOM    128  O   GLN    44      39.392  18.320  -2.053  1.00  1.00
ATOM    129  CB  GLN    44      36.295  17.228  -2.963  1.00  1.00
ATOM    130  N   SER    45      37.768  18.345  -0.507  1.00  1.00
ATOM    131  CA  SER    45      38.363  19.462   0.218  1.00  1.00
ATOM    132  C   SER    45      39.136  19.119   1.496  1.00  1.00
ATOM    133  O   SER    45      39.748  19.991   2.104  1.00  1.00
ATOM    134  CB  SER    45      37.310  20.547   0.490  1.00  1.00
ATOM    135  N   GLY    46      39.109  17.855   1.910  1.00  1.00
ATOM    136  CA  GLY    46      39.840  17.460   3.104  1.00  1.00
ATOM    137  C   GLY    46      39.185  17.698   4.456  1.00  1.00
ATOM    138  O   GLY    46      39.795  17.405   5.488  1.00  1.00
ATOM    139  N   ILE    47      37.965  18.228   4.467  1.00  1.00
ATOM    140  CA  ILE    47      37.252  18.482   5.719  1.00  1.00
ATOM    141  C   ILE    47      36.739  17.183   6.331  1.00  1.00
ATOM    142  O   ILE    47      36.360  16.246   5.619  1.00  1.00
ATOM    143  CB  ILE    47      36.093  19.453   5.496  1.00  1.00
ATOM    144  N   LEU    48      36.749  17.128   7.658  1.00  1.00
ATOM    145  CA  LEU    48      36.307  15.948   8.386  1.00  1.00
ATOM    146  C   LEU    48      35.366  16.408   9.477  1.00  1.00
ATOM    147  O   LEU    48      35.738  17.231  10.308  1.00  1.00
ATOM    148  CB  LEU    48      37.510  15.236   9.008  1.00  1.00
ATOM    149  N   SER    49      34.141  15.897   9.466  1.00  1.00
ATOM    150  CA  SER    49      33.162  16.284  10.470  1.00  1.00
ATOM    151  C   SER    49      32.279  15.122  10.870  1.00  1.00
ATOM    152  O   SER    49      32.288  14.070  10.232  1.00  1.00
ATOM    153  CB  SER    49      32.313  17.478  10.005  1.00  1.00
ATOM    154  N   GLN    50      31.559  15.308  11.966  1.00  1.00
ATOM    155  CA  GLN    50      30.668  14.297  12.503  1.00  1.00
ATOM    156  C   GLN    50      29.268  14.865  12.647  1.00  1.00
ATOM    157  O   GLN    50      29.090  16.018  13.028  1.00  1.00
ATOM    158  CB  GLN    50      31.182  13.839  13.866  1.00  1.00
ATOM    159  N   PHE    51      28.280  14.034  12.360  1.00  1.00
ATOM    160  CA  PHE    51      26.891  14.429  12.433  1.00  1.00
ATOM    161  C   PHE    51      26.098  13.124  12.623  1.00  1.00
ATOM    162  O   PHE    51      26.589  12.198  13.264  1.00  1.00
ATOM    163  CB  PHE    51      26.508  15.237  11.151  1.00  1.00
ATOM    164  N   GLU    53      24.883  13.038  12.094  1.00  1.00
ATOM    165  CA  GLU    53      24.089  11.828  12.238  1.00  1.00
ATOM    166  C   GLU    53      23.310  11.614  10.950  1.00  1.00
ATOM    167  O   GLU    53      23.059  12.569  10.203  1.00  1.00
ATOM    168  CB  GLU    53      23.160  11.929  13.458  1.00  1.00
ATOM    169  N   ILE    54      22.984  10.360  10.667  1.00  1.00
ATOM    170  CA  ILE    54      22.265   9.991   9.453  1.00  1.00
ATOM    171  C   ILE    54      20.747  10.119   9.492  1.00  1.00
ATOM    172  O   ILE    54      20.098   9.859  10.497  1.00  1.00
ATOM    173  CB  ILE    54      22.646   8.582   9.034  1.00  1.00
ATOM    174  N   ASP    55      20.198  10.484   8.349  1.00  1.00
ATOM    175  CA  ASP    55      18.768  10.637   8.151  1.00  1.00
ATOM    176  C   ASP    55      18.538   9.784   6.909  1.00  1.00
ATOM    177  O   ASP    55      19.442   9.639   6.077  1.00  1.00
ATOM    178  CB  ASP    55      18.402  12.124   7.879  1.00  1.00
ATOM    179  N   LEU    56      17.376   9.162   6.804  1.00  1.00
ATOM    180  CA  LEU    56      17.104   8.318   5.647  1.00  1.00
ATOM    181  C   LEU    56      16.395   9.080   4.537  1.00  1.00
ATOM    182  O   LEU    56      15.500   9.884   4.800  1.00  1.00
ATOM    183  CB  LEU    56      16.281   7.105   6.062  1.00  1.00
TER
END
