
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   36 (  179),  selected   36 , name T0363TS102_3-D1
# Molecule2: number of CA atoms   46 (  372),  selected   46 , name T0363_D1.pdb
# PARAMETERS: T0363TS102_3-D1.T0363_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      N      11           -
LGA    -       -      Q      12           -
LGA    -       -      I      13           -
LGA    -       -      N      14           -
LGA    -       -      I      15           -
LGA    -       -      E      16           -
LGA    -       -      I      17           -
LGA    -       -      A      18           -
LGA    -       -      Y      19           -
LGA    -       -      A      20           -
LGA    Q      12      F      21          3.491
LGA    -       -      P      22           -
LGA    -       -      E      23           -
LGA    I      13      R      24          2.404
LGA    N      14      Y      25          1.527
LGA    I      15      Y      26          1.683
LGA    E      16      L      27          1.140
LGA    I      17      K      28          0.869
LGA    A      18      S      29          1.197
LGA    Y      19      F      30          0.951
LGA    A      20      Q      31          1.738
LGA    F      21      V      32          2.706
LGA    P      22      D      33          3.419
LGA    E      23      E      34          2.445
LGA    R      24      G      35          3.392
LGA    Y      25      I      36          2.558
LGA    Y      26      T      37           #
LGA    L      27      V      38          4.390
LGA    D      33      Q      39          3.839
LGA    T      37      T      40          3.167
LGA    V      38      A      41          2.428
LGA    Q      39      I      42          0.728
LGA    T      40      T      43          0.704
LGA    A      41      Q      44          2.632
LGA    -       -      S      45           -
LGA    I      42      G      46          3.282
LGA    T      43      I      47           #
LGA    Q      44      L      48          3.965
LGA    S      45      S      49          2.936
LGA    G      46      Q      50          5.434
LGA    I      47      F      51          3.018
LGA    L      48      P      52          4.253
LGA    S      49      E      53          4.018
LGA    Q      50      I      54          4.418
LGA    F      51      D      55           -
LGA    E      53      L      56           -
LGA    I      54      -       -           -
LGA    D      55      -       -           -
LGA    L      56      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   36   46    5.0     29    2.99    13.79     41.572     0.939

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.442541 * X  +   0.464542 * Y  +   0.767045 * Z  +  29.694950
  Y_new =   0.560560 * X  +   0.524342 * Y  +  -0.640966 * Z  +  10.857147
  Z_new =  -0.699950 * X  +   0.713628 * Y  +  -0.028361 * Z  +  -0.088837 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.610518   -1.531075  [ DEG:    92.2759    -87.7241 ]
  Theta =   0.775328    2.366265  [ DEG:    44.4230    135.5770 ]
  Phi   =   0.902515   -2.239078  [ DEG:    51.7103   -128.2897 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0363TS102_3-D1                               
REMARK     2: T0363_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0363TS102_3-D1.T0363_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   36   46   5.0   29   2.99   13.79  41.572
REMARK  ---------------------------------------------------------- 
MOLECULE T0363TS102_3-D1
PFRMAT TS
TARGET T0363
MODEL 3
PARENT 2crl_A
ATOM     51  N   GLN    12      34.377  24.791  -6.307  1.00  1.00
ATOM     52  CA  GLN    12      33.776  24.173  -5.130  1.00  1.00
ATOM     53  C   GLN    12      32.282  24.475  -5.060  1.00  1.00
ATOM     54  O   GLN    12      31.875  25.637  -5.041  1.00  1.00
ATOM     55  CB  GLN    12      34.469  24.667  -3.859  1.00  1.00
ATOM     56  N   ILE    13      31.473  23.423  -5.017  1.00  1.00
ATOM     57  CA  ILE    13      30.024  23.575  -4.946  1.00  1.00
ATOM     58  C   ILE    13      29.431  22.657  -3.882  1.00  1.00
ATOM     59  O   ILE    13      30.090  21.729  -3.410  1.00  1.00
ATOM     60  CB  ILE    13      29.391  23.275  -6.305  1.00  1.00
ATOM     61  N   ASN    14      28.183  22.921  -3.507  1.00  1.00
ATOM     62  CA  ASN    14      27.504  22.121  -2.498  1.00  1.00
ATOM     63  C   ASN    14      26.645  21.038  -3.140  1.00  1.00
ATOM     64  O   ASN    14      25.887  21.305  -4.073  1.00  1.00
ATOM     65  CB  ASN    14      26.615  22.995  -1.592  1.00  1.00
ATOM     66  N   ILE    15      26.767  19.815  -2.636  1.00  1.00
ATOM     67  CA  ILE    15      26.001  18.691  -3.161  1.00  1.00
ATOM     68  C   ILE    15      25.129  18.071  -2.075  1.00  1.00
ATOM     69  O   ILE    15      25.632  17.593  -1.059  1.00  1.00
ATOM     70  CB  ILE    15      26.942  17.633  -3.741  1.00  1.00
ATOM     71  N   GLU    16      23.818  18.081  -2.297  1.00  1.00
ATOM     72  CA  GLU    16      22.876  17.518  -1.336  1.00  1.00
ATOM     73  C   GLU    16      22.554  16.066  -1.676  1.00  1.00
ATOM     74  O   GLU    16      22.027  15.771  -2.749  1.00  1.00
ATOM     75  CB  GLU    16      21.589  18.344  -1.307  1.00  1.00
ATOM     76  N   ILE    17      22.877  15.163  -0.757  1.00  1.00
ATOM     77  CA  ILE    17      22.623  13.741  -0.959  1.00  1.00
ATOM     78  C   ILE    17      21.754  13.179   0.163  1.00  1.00
ATOM     79  O   ILE    17      22.062  13.344   1.343  1.00  1.00
ATOM     80  CB  ILE    17      23.944  12.971  -1.032  1.00  1.00
ATOM     81  N   ALA    18      20.668  12.513  -0.215  1.00  1.00
ATOM     82  CA  ALA    18      19.756  11.925   0.757  1.00  1.00
ATOM     83  C   ALA    18      20.168  10.498   1.104  1.00  1.00
ATOM     84  O   ALA    18      19.827   9.553   0.393  1.00  1.00
ATOM     85  CB  ALA    18      18.330  11.950   0.226  1.00  1.00
ATOM     86  N   TYR    19      20.905  10.350   2.200  1.00  1.00
ATOM     87  CA  TYR    19      21.364   9.038   2.641  1.00  1.00
ATOM     88  C   TYR    19      20.474   8.489   3.750  1.00  1.00
ATOM     89  O   TYR    19      20.200   9.174   4.735  1.00  1.00
ATOM     90  CB  TYR    19      22.819   9.093   3.144  1.00  1.00
ATOM     91  N   ALA    20      20.027   7.249   3.583  1.00  1.00
ATOM     92  CA  ALA    20      19.168   6.607   4.570  1.00  1.00
ATOM     93  C   ALA    20      19.982   6.116   5.763  1.00  1.00
ATOM     94  O   ALA    20      20.717   5.136   5.664  1.00  1.00
ATOM     95  CB  ALA    20      18.412   5.438   3.937  1.00  1.00
ATOM     96  N   PHE    21      19.844   6.806   6.891  1.00  1.00
ATOM     97  CA  PHE    21      20.565   6.440   8.104  1.00  1.00
ATOM     98  C   PHE    21      19.632   5.783   9.115  1.00  1.00
ATOM     99  O   PHE    21      18.409   5.884   9.004  1.00  1.00
ATOM    100  CB  PHE    21      21.223   7.674   8.725  1.00  1.00
ATOM    101  N   PRO    22      20.214   5.111  10.103  1.00  1.00
ATOM    102  CA  PRO    22      19.434   4.437  11.134  1.00  1.00
ATOM    103  C   PRO    22      19.923   4.814  12.527  1.00  1.00
ATOM    104  O   PRO    22      19.165   5.350  13.338  1.00  1.00
ATOM    105  CB  PRO    22      19.498   2.906  10.976  1.00  1.00
ATOM    106  N   GLU    23      21.191   4.531  12.801  1.00  1.00
ATOM    107  CA  GLU    23      21.782   4.841  14.099  1.00  1.00
ATOM    108  C   GLU    23      23.046   5.676  13.936  1.00  1.00
ATOM    109  O   GLU    23      23.499   5.921  12.818  1.00  1.00
ATOM    110  CB  GLU    23      22.101   3.552  14.857  1.00  1.00
ATOM    111  N   ARG    24      23.611   6.112  15.057  1.00  1.00
ATOM    112  CA  ARG    24      24.823   6.922  15.038  1.00  1.00
ATOM    113  C   ARG    24      25.841   6.355  14.055  1.00  1.00
ATOM    114  O   ARG    24      26.322   7.061  13.168  1.00  1.00
ATOM    115  CB  ARG    24      25.435   6.996  16.437  1.00  1.00
ATOM    116  N   TYR    25      26.165   5.077  14.218  1.00  1.00
ATOM    117  CA  TYR    25      27.130   4.416  13.347  1.00  1.00
ATOM    118  C   TYR    25      27.031   4.951  11.921  1.00  1.00
ATOM    119  O   TYR    25      27.986   5.521  11.393  1.00  1.00
ATOM    120  CB  TYR    25      26.902   2.903  13.352  1.00  1.00
ATOM    121  N   TYR    26      25.869   4.764  11.305  1.00  1.00
ATOM    122  CA  TYR    26      25.645   5.226   9.940  1.00  1.00
ATOM    123  C   TYR    26      26.115   6.667   9.770  1.00  1.00
ATOM    124  O   TYR    26      26.747   7.010   8.771  1.00  1.00
ATOM    125  CB  TYR    26      24.161   5.114   9.580  1.00  1.00
ATOM    126  N   LEU    27      25.800   7.506  10.752  1.00  1.00
ATOM    127  CA  LEU    27      26.190   8.911  10.710  1.00  1.00
ATOM    128  C   LEU    27      27.700   9.067  10.849  1.00  1.00
ATOM    129  O   LEU    27      28.295   9.982  10.280  1.00  1.00
ATOM    130  CB  LEU    27      25.497   9.718  11.824  1.00  1.00
ATOM    131  N   ASP    33      28.314   8.166  11.608  1.00  1.00
ATOM    132  CA  ASP    33      29.756   8.202  11.822  1.00  1.00
ATOM    133  C   ASP    33      30.501   7.726  10.578  1.00  1.00
ATOM    134  O   ASP    33      31.577   8.230  10.256  1.00  1.00
ATOM    135  CB  ASP    33      30.138   7.335  13.023  1.00  1.00
ATOM    136  N   THR    37      29.922   6.751   9.885  1.00  1.00
ATOM    137  CA  THR    37      30.530   6.208   8.677  1.00  1.00
ATOM    138  C   THR    37      30.363   7.164   7.501  1.00  1.00
ATOM    139  O   THR    37      31.313   7.423   6.760  1.00  1.00
ATOM    140  CB  THR    37      29.926   4.851   8.347  1.00  1.00
ATOM    141  N   VAL    38      29.153   7.685   7.334  1.00  1.00
ATOM    142  CA  VAL    38      28.862   8.613   6.248  1.00  1.00
ATOM    143  C   VAL    38      29.795   9.818   6.290  1.00  1.00
ATOM    144  O   VAL    38      30.317  10.249   5.262  1.00  1.00
ATOM    145  CB  VAL    38      27.404   9.106   6.305  1.00  1.00
ATOM    146  N   GLN    39      30.003  10.357   7.487  1.00  1.00
ATOM    147  CA  GLN    39      30.874  11.513   7.664  1.00  1.00
ATOM    148  C   GLN    39      32.326  11.150   7.370  1.00  1.00
ATOM    149  O   GLN    39      33.019  11.857   6.637  1.00  1.00
ATOM    150  CB  GLN    39      30.751  12.058   9.088  1.00  1.00
ATOM    151  N   THR    40      32.782  10.043   7.947  1.00  1.00
ATOM    152  CA  THR    40      34.152   9.585   7.748  1.00  1.00
ATOM    153  C   THR    40      34.438   9.349   6.268  1.00  1.00
ATOM    154  O   THR    40      35.482   9.751   5.756  1.00  1.00
ATOM    155  CB  THR    40      34.400   8.297   8.537  1.00  1.00
ATOM    156  N   ALA    41      33.501   8.697   5.586  1.00  1.00
ATOM    157  CA  ALA    41      33.653   8.407   4.166  1.00  1.00
ATOM    158  C   ALA    41      34.087   9.653   3.399  1.00  1.00
ATOM    159  O   ALA    41      34.687   9.559   2.328  1.00  1.00
ATOM    160  CB  ALA    41      32.340   7.871   3.590  1.00  1.00
ATOM    161  N   ILE    42      33.778  10.818   3.956  1.00  1.00
ATOM    162  CA  ILE    42      34.135  12.085   3.327  1.00  1.00
ATOM    163  C   ILE    42      34.758  13.040   4.341  1.00  1.00
ATOM    164  O   ILE    42      34.824  14.247   4.110  1.00  1.00
ATOM    165  CB  ILE    42      32.900  12.729   2.695  1.00  1.00
ATOM    166  N   THR    43      35.215  12.490   5.461  1.00  1.00
ATOM    167  CA  THR    43      35.834  13.294   6.508  1.00  1.00
ATOM    168  C   THR    43      37.285  13.613   6.164  1.00  1.00
ATOM    169  O   THR    43      38.127  12.719   6.089  1.00  1.00
ATOM    170  CB  THR    43      35.766  12.561   7.850  1.00  1.00
ATOM    171  N   GLN    44      37.570  14.894   5.953  1.00  1.00
ATOM    172  CA  GLN    44      38.920  15.309   5.619  1.00  1.00
ATOM    173  C   GLN    44      39.528  14.467   4.514  1.00  1.00
ATOM    174  O   GLN    44      40.659  13.998   4.631  1.00  1.00
ATOM    175  CB  GLN    44      39.793  15.143   6.877  1.00  1.00
ATOM    176  N   SER    45      38.773  14.273   3.436  1.00  1.00
ATOM    177  CA  SER    45      39.243  13.481   2.306  1.00  1.00
ATOM    178  C   SER    45      39.624  14.374   1.130  1.00  1.00
ATOM    179  O   SER    45      38.912  15.323   0.802  1.00  1.00
ATOM    180  CB  SER    45      38.176  12.471   1.846  1.00  1.00
ATOM    181  N   GLY    46      40.751  14.063   0.499  1.00  1.00
ATOM    182  CA  GLY    46      41.224  14.835  -0.643  1.00  1.00
ATOM    183  C   GLY    46      40.057  15.352  -1.478  1.00  1.00
ATOM    184  O   GLY    46      39.210  14.580  -1.924  1.00  1.00
ATOM    185  N   ILE    47      40.021  16.665  -1.687  1.00  1.00
ATOM    186  CA  ILE    47      38.953  17.263  -2.468  1.00  1.00
ATOM    187  C   ILE    47      37.843  17.821  -1.600  1.00  1.00
ATOM    188  O   ILE    47      37.520  19.006  -1.678  1.00  1.00
ATOM    189  CB  ILE    47      38.349  16.166  -3.364  1.00  1.00
ATOM    190  N   LEU    48      37.255  16.964  -0.771  1.00  1.00
ATOM    191  CA  LEU    48      36.173  17.377   0.115  1.00  1.00
ATOM    192  C   LEU    48      36.630  18.481   1.063  1.00  1.00
ATOM    193  O   LEU    48      37.674  18.369   1.704  1.00  1.00
ATOM    194  CB  LEU    48      35.642  16.193   0.944  1.00  1.00
ATOM    195  N   SER    49      35.841  19.548   1.145  1.00  1.00
ATOM    196  CA  SER    49      36.165  20.672   2.014  1.00  1.00
ATOM    197  C   SER    49      35.247  20.703   3.231  1.00  1.00
ATOM    198  O   SER    49      35.635  21.169   4.302  1.00  1.00
ATOM    199  CB  SER    49      36.053  21.989   1.243  1.00  1.00
ATOM    200  N   GLN    50      34.029  20.201   3.060  1.00  1.00
ATOM    201  CA  GLN    50      33.055  20.170   4.145  1.00  1.00
ATOM    202  C   GLN    50      31.950  19.158   3.854  1.00  1.00
ATOM    203  O   GLN    50      31.688  18.825   2.699  1.00  1.00
ATOM    204  CB  GLN    50      32.450  21.558   4.355  1.00  1.00
ATOM    205  N   PHE    51      31.307  18.672   4.912  1.00  1.00
ATOM    206  CA  PHE    51      30.232  17.698   4.770  1.00  1.00
ATOM    207  C   PHE    51      29.246  17.796   5.930  1.00  1.00
ATOM    208  O   PHE    51      29.630  17.680   7.093  1.00  1.00
ATOM    209  CB  PHE    51      30.781  16.261   4.698  1.00  1.00
ATOM    210  N   GLU    53      27.975  18.008   5.604  1.00  1.00
ATOM    211  CA  GLU    53      26.936  18.122   6.619  1.00  1.00
ATOM    212  C   GLU    53      26.007  16.910   6.585  1.00  1.00
ATOM    213  O   GLU    53      25.542  16.501   5.521  1.00  1.00
ATOM    214  CB  GLU    53      26.127  19.404   6.412  1.00  1.00
ATOM    215  N   ILE    54      25.742  16.342   7.756  1.00  1.00
ATOM    216  CA  ILE    54      24.869  15.179   7.862  1.00  1.00
ATOM    217  C   ILE    54      23.684  15.461   8.779  1.00  1.00
ATOM    218  O   ILE    54      23.855  15.714   9.971  1.00  1.00
ATOM    219  CB  ILE    54      25.632  13.950   8.391  1.00  1.00
ATOM    220  N   ASP    55      22.483  15.417   8.213  1.00  1.00
ATOM    221  CA  ASP    55      21.267  15.667   8.981  1.00  1.00
ATOM    222  C   ASP    55      20.456  14.385   9.147  1.00  1.00
ATOM    223  O   ASP    55      19.887  13.869   8.184  1.00  1.00
ATOM    224  CB  ASP    55      20.417  16.737   8.295  1.00  1.00
ATOM    225  N   LEU    56      20.408  13.877  10.373  1.00  1.00
ATOM    226  CA  LEU    56      19.666  12.655  10.666  1.00  1.00
ATOM    227  C   LEU    56      18.170  12.935  10.760  1.00  1.00
ATOM    228  O   LEU    56      17.350  12.026  10.634  1.00  1.00
ATOM    229  CB  LEU    56      20.163  12.034  11.973  1.00  1.00
TER
END
