
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   46 (  232),  selected   46 , name T0363TS437_2-D1
# Molecule2: number of CA atoms   46 (  372),  selected   46 , name T0363_D1.pdb
# PARAMETERS: T0363TS437_2-D1.T0363_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      N      11           -
LGA    -       -      Q      12           -
LGA    -       -      I      13           -
LGA    -       -      N      14           -
LGA    -       -      I      15           -
LGA    N      11      E      16          2.303
LGA    Q      12      I      17          0.962
LGA    -       -      A      18           -
LGA    -       -      Y      19           -
LGA    -       -      A      20           -
LGA    -       -      F      21           -
LGA    -       -      P      22           -
LGA    -       -      E      23           -
LGA    -       -      R      24           -
LGA    -       -      Y      25           -
LGA    -       -      Y      26           -
LGA    I      13      L      27           #
LGA    N      14      K      28          2.235
LGA    I      15      S      29          4.535
LGA    E      16      F      30          3.694
LGA    I      17      Q      31          5.052
LGA    A      18      V      32          4.723
LGA    Y      19      D      33          4.390
LGA    A      20      E      34           #
LGA    F      21      G      35          3.778
LGA    P      22      I      36           #
LGA    E      23      T      37          3.934
LGA    -       -      V      38           -
LGA    -       -      Q      39           -
LGA    R      24      T      40          3.581
LGA    Y      25      A      41          1.963
LGA    -       -      I      42           -
LGA    Y      26      T      43           #
LGA    L      27      Q      44          3.178
LGA    K      28      -       -           -
LGA    S      29      -       -           -
LGA    F      30      -       -           -
LGA    Q      31      -       -           -
LGA    V      32      S      45          5.136
LGA    D      33      -       -           -
LGA    E      34      -       -           -
LGA    G      35      -       -           -
LGA    I      36      G      46          4.487
LGA    T      37      I      47          2.873
LGA    V      38      L      48          2.889
LGA    Q      39      S      49          2.533
LGA    T      40      Q      50          2.552
LGA    A      41      F      51          3.018
LGA    I      42      P      52          2.279
LGA    T      43      -       -           -
LGA    Q      44      -       -           -
LGA    S      45      E      53          2.455
LGA    G      46      I      54          2.289
LGA    I      47      D      55          3.074
LGA    L      48      L      56           -
LGA    S      49      -       -           -
LGA    Q      50      -       -           -
LGA    F      51      -       -           -
LGA    P      52      -       -           -
LGA    E      53      -       -           -
LGA    I      54      -       -           -
LGA    D      55      -       -           -
LGA    L      56      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   46   46    5.0     24    3.42     0.00     32.772     0.683

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.425985 * X  +  -0.836801 * Y  +  -0.343949 * Z  +  60.155224
  Y_new =   0.684197 * X  +  -0.546701 * Y  +   0.482693 * Z  + -132.645203
  Z_new =  -0.591955 * X  +  -0.029709 * Y  +   0.805423 * Z  + 102.348129 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.036870    3.104723  [ DEG:    -2.1125    177.8875 ]
  Theta =   0.633483    2.508110  [ DEG:    36.2959    143.7041 ]
  Phi   =   2.127672   -1.013921  [ DEG:   121.9066    -58.0934 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0363TS437_2-D1                               
REMARK     2: T0363_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0363TS437_2-D1.T0363_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   46   46   5.0   24   3.42    0.00  32.772
REMARK  ---------------------------------------------------------- 
MOLECULE T0363TS437_2-D1
PFRMAT TS
TARGET T0363
MODEL     2 REFINED
PARENT N/A
ATOM     88  N   ASN    11      21.791  14.631   6.654  1.00   .00
ATOM     89  CA  ASN    11      21.391  15.996   5.938  1.00   .00
ATOM     90  C   ASN    11      22.699  16.930   5.446  1.00   .00
ATOM     91  O   ASN    11      22.865  18.115   5.782  1.00   .00
ATOM     92  CB  ASN    11      20.439  16.727   6.926  1.00   .00
ATOM     96  N   GLN    12      23.569  16.259   4.660  1.00   .00
ATOM     97  CA  GLN    12      24.884  16.830   4.058  1.00   .00
ATOM     98  C   GLN    12      25.402  15.819   2.830  1.00   .00
ATOM     99  O   GLN    12      25.854  16.274   1.766  1.00   .00
ATOM    100  CB  GLN    12      25.961  16.948   5.208  1.00   .00
ATOM    105  N   ILE    13      25.284  14.433   3.035  1.00   .00
ATOM    106  CA  ILE    13      25.669  13.401   1.977  1.00   .00
ATOM    107  C   ILE    13      24.329  12.557   1.539  1.00   .00
ATOM    108  O   ILE    13      23.955  11.560   2.191  1.00   .00
ATOM    109  CB  ILE    13      26.769  12.489   2.630  1.00   .00
ATOM    113  N   ASN    14      23.625  13.002   0.441  1.00   .00
ATOM    114  CA  ASN    14      22.307  12.277  -0.051  1.00   .00
ATOM    115  C   ASN    14      22.556  10.786  -0.760  1.00   .00
ATOM    116  O   ASN    14      22.179  10.525  -1.913  1.00   .00
ATOM    117  CB  ASN    14      21.603  13.305  -1.005  1.00   .00
ATOM    121  N   ILE    15      23.218   9.869   0.014  1.00   .00
ATOM    122  CA  ILE    15      23.548   8.464  -0.469  1.00   .00
ATOM    123  C   ILE    15      22.826   7.316   0.419  1.00   .00
ATOM    124  O   ILE    15      23.048   7.231   1.653  1.00   .00
ATOM    125  CB  ILE    15      25.115   8.357  -0.388  1.00   .00
ATOM    129  N   GLU    16      21.993   6.395  -0.221  1.00   .00
ATOM    130  CA  GLU    16      21.300   5.191   0.598  1.00   .00
ATOM    131  C   GLU    16      22.399   3.982   1.046  1.00   .00
ATOM    132  O   GLU    16      22.241   2.768   0.838  1.00   .00
ATOM    133  CB  GLU    16      20.158   4.665  -0.324  1.00   .00
ATOM    138  N   ILE    17      23.479   4.482   1.651  1.00   .00
ATOM    139  CA  ILE    17      24.668   3.704   2.175  1.00   .00
ATOM    140  C   ILE    17      25.415   4.489   3.447  1.00   .00
ATOM    141  O   ILE    17      26.247   3.884   4.113  1.00   .00
ATOM    142  CB  ILE    17      25.660   3.487   0.962  1.00   .00
ATOM    146  N   ALA    18      25.064   5.826   3.722  1.00   .00
ATOM    147  CA  ALA    18      25.665   6.654   4.874  1.00   .00
ATOM    148  C   ALA    18      24.704   6.673   6.175  1.00   .00
ATOM    149  O   ALA    18      23.880   7.572   6.351  1.00   .00
ATOM    150  CB  ALA    18      25.882   8.080   4.266  1.00   .00
ATOM    151  N   TYR    19      24.845   5.655   7.072  1.00   .00
ATOM    152  CA  TYR    19      23.978   5.570   8.358  1.00   .00
ATOM    153  C   TYR    19      24.395   6.659   9.521  1.00   .00
ATOM    154  O   TYR    19      25.478   6.562  10.157  1.00   .00
ATOM    155  CB  TYR    19      24.095   4.097   8.849  1.00   .00
ATOM    163  N   ALA    20      23.499   7.666   9.761  1.00   .00
ATOM    164  CA  ALA    20      23.775   8.745  10.825  1.00   .00
ATOM    165  C   ALA    20      23.309   8.340  12.355  1.00   .00
ATOM    166  O   ALA    20      22.123   8.280  12.686  1.00   .00
ATOM    167  CB  ALA    20      23.033  10.022  10.332  1.00   .00
ATOM    168  N   PHE    21      24.312   8.123  13.226  1.00   .00
ATOM    169  CA  PHE    21      24.093   7.821  14.739  1.00   .00
ATOM    170  C   PHE    21      24.484   9.192  15.616  1.00   .00
ATOM    171  O   PHE    21      25.153  10.109  15.069  1.00   .00
ATOM    172  CB  PHE    21      25.001   6.585  15.055  1.00   .00
ATOM    179  N   PRO    22      24.082   9.360  16.988  1.00   .00
ATOM    180  CA  PRO    22      24.463  10.638  17.812  1.00   .00
ATOM    181  C   PRO    22      26.078  10.896  17.845  1.00   .00
ATOM    182  O   PRO    22      26.839  10.215  18.541  1.00   .00
ATOM    183  CB  PRO    22      23.788  10.308  19.182  1.00   .00
ATOM    184  CG  PRO    22      23.614   8.757  19.219  1.00   .00
ATOM    185  CD  PRO    22      23.299   8.349  17.776  1.00   .00
ATOM    186  N   GLU    23      26.528  11.889  16.986  1.00   .00
ATOM    187  CA  GLU    23      28.055  12.239  16.787  1.00   .00
ATOM    188  C   GLU    23      28.932  11.116  15.892  1.00   .00
ATOM    189  O   GLU    23      30.174  11.116  15.952  1.00   .00
ATOM    190  CB  GLU    23      28.735  12.635  18.148  1.00   .00
ATOM    195  N   ARG    24      28.260  10.202  15.076  1.00   .00
ATOM    196  CA  ARG    24      29.023   9.153  14.211  1.00   .00
ATOM    197  C   ARG    24      28.234   8.864  12.794  1.00   .00
ATOM    198  O   ARG    24      27.046   8.511  12.767  1.00   .00
ATOM    199  CB  ARG    24      29.190   7.848  15.067  1.00   .00
ATOM    206  N   TYR    25      28.944   9.028  11.640  1.00   .00
ATOM    207  CA  TYR    25      28.319   8.789  10.239  1.00   .00
ATOM    208  C   TYR    25      29.057   7.527   9.490  1.00   .00
ATOM    209  O   TYR    25      30.219   7.629   9.047  1.00   .00
ATOM    210  CB  TYR    25      28.467  10.152   9.465  1.00   .00
ATOM    218  N   TYR    26      28.347   6.348   9.366  1.00   .00
ATOM    219  CA  TYR    26      28.970   5.077   8.671  1.00   .00
ATOM    220  C   TYR    26      28.586   4.936   7.077  1.00   .00
ATOM    221  O   TYR    26      27.459   4.556   6.718  1.00   .00
ATOM    222  CB  TYR    26      28.490   3.879   9.524  1.00   .00
ATOM    230  N   LEU    27      29.560   5.272   6.166  1.00   .00
ATOM    231  CA  LEU    27      29.335   5.217   4.633  1.00   .00
ATOM    232  C   LEU    27      29.903   3.880   3.900  1.00   .00
ATOM    233  O   LEU    27      31.120   3.689   3.781  1.00   .00
ATOM    234  CB  LEU    27      29.970   6.537   4.063  1.00   .00
ATOM    238  N   LYS    28      28.970   2.997   3.392  1.00   .00
ATOM    239  CA  LYS    28      29.400   1.711   2.635  1.00   .00
ATOM    240  C   LYS    28      29.665   1.980   1.013  1.00   .00
ATOM    241  O   LYS    28      28.949   2.755   0.343  1.00   .00
ATOM    242  CB  LYS    28      28.286   0.652   2.899  1.00   .00
ATOM    247  N   SER    29      30.725   1.320   0.437  1.00   .00
ATOM    248  CA  SER    29      31.129   1.499  -1.062  1.00   .00
ATOM    249  C   SER    29      30.105   1.070  -2.305  1.00   .00
ATOM    250  O   SER    29      30.468   0.319  -3.209  1.00   .00
ATOM    251  CB  SER    29      32.504   0.800  -1.168  1.00   .00
ATOM    253  N   PHE    30      28.887   1.656  -2.313  1.00   .00
ATOM    254  CA  PHE    30      27.846   1.449  -3.482  1.00   .00
ATOM    255  C   PHE    30      27.361   2.941  -3.921  1.00   .00
ATOM    256  O   PHE    30      27.945   3.528  -4.837  1.00   .00
ATOM    257  CB  PHE    30      26.735   0.422  -3.031  1.00   .00
ATOM    264  N   GLN    31      26.334   3.551  -3.210  1.00   .00
ATOM    265  CA  GLN    31      25.889   5.013  -3.530  1.00   .00
ATOM    266  C   GLN    31      27.045   6.152  -3.118  1.00   .00
ATOM    267  O   GLN    31      27.153   7.202  -3.757  1.00   .00
ATOM    268  CB  GLN    31      24.524   5.245  -2.835  1.00   .00
ATOM    273  N   VAL    32      27.902   5.868  -2.040  1.00   .00
ATOM    274  CA  VAL    32      29.036   6.842  -1.601  1.00   .00
ATOM    275  C   VAL    32      30.203   7.144  -2.756  1.00   .00
ATOM    276  O   VAL    32      30.726   8.267  -2.832  1.00   .00
ATOM    277  CB  VAL    32      29.642   6.220  -0.304  1.00   .00
ATOM    280  N   ASP    33      30.539   6.116  -3.633  1.00   .00
ATOM    281  CA  ASP    33      31.583   6.317  -4.778  1.00   .00
ATOM    282  C   ASP    33      31.207   7.491  -5.903  1.00   .00
ATOM    283  O   ASP    33      32.109   8.078  -6.508  1.00   .00
ATOM    284  CB  ASP    33      31.757   4.914  -5.454  1.00   .00
ATOM    288  N   GLU    34      29.870   7.798  -6.122  1.00   .00
ATOM    289  CA  GLU    34      29.430   8.901  -7.125  1.00   .00
ATOM    290  C   GLU    34      29.711  10.451  -6.623  1.00   .00
ATOM    291  O   GLU    34      29.908  11.342  -7.460  1.00   .00
ATOM    292  CB  GLU    34      27.918   8.622  -7.391  1.00   .00
ATOM    297  N   GLY    35      29.722  10.725  -5.267  1.00   .00
ATOM    298  CA  GLY    35      30.003  12.169  -4.731  1.00   .00
ATOM    299  C   GLY    35      29.494  12.458  -3.255  1.00   .00
ATOM    300  O   GLY    35      28.667  13.350  -3.044  1.00   .00
ATOM    301  N   ILE    36      30.016  11.704  -2.235  1.00   .00
ATOM    302  CA  ILE    36      29.592  11.951  -0.756  1.00   .00
ATOM    303  C   ILE    36      30.402  13.221  -0.090  1.00   .00
ATOM    304  O   ILE    36      31.612  13.391  -0.326  1.00   .00
ATOM    305  CB  ILE    36      29.882  10.630   0.044  1.00   .00
ATOM    309  N   THR    37      29.700  14.091   0.742  1.00   .00
ATOM    310  CA  THR    37      30.399  15.346   1.430  1.00   .00
ATOM    311  C   THR    37      31.894  15.070   2.091  1.00   .00
ATOM    312  O   THR    37      32.794  15.910   1.967  1.00   .00
ATOM    313  CB  THR    37      29.399  15.911   2.478  1.00   .00
ATOM    316  N   VAL    38      32.102  13.856   2.733  1.00   .00
ATOM    317  CA  VAL    38      33.492  13.463   3.320  1.00   .00
ATOM    318  C   VAL    38      34.716  13.416   2.191  1.00   .00
ATOM    319  O   VAL    38      35.847  13.786   2.492  1.00   .00
ATOM    320  CB  VAL    38      33.274  12.093   4.029  1.00   .00
ATOM    323  N   GLN    39      34.402  12.994   0.904  1.00   .00
ATOM    324  CA  GLN    39      35.452  12.992  -0.245  1.00   .00
ATOM    325  C   GLN    39      35.788  14.529  -0.731  1.00   .00
ATOM    326  O   GLN    39      36.959  14.920  -0.820  1.00   .00
ATOM    327  CB  GLN    39      34.882  12.080  -1.405  1.00   .00
ATOM    332  N   THR    40      34.694  15.370  -0.974  1.00   .00
ATOM    333  CA  THR    40      34.884  16.869  -1.355  1.00   .00
ATOM    334  C   THR    40      35.595  17.729  -0.124  1.00   .00
ATOM    335  O   THR    40      36.548  18.469  -0.361  1.00   .00
ATOM    336  CB  THR    40      33.475  17.415  -1.774  1.00   .00
ATOM    339  N   ALA    41      35.105  17.548   1.177  1.00   .00
ATOM    340  CA  ALA    41      35.756  18.247   2.404  1.00   .00
ATOM    341  C   ALA    41      37.317  17.767   2.604  1.00   .00
ATOM    342  O   ALA    41      38.193  18.621   2.704  1.00   .00
ATOM    343  CB  ALA    41      34.861  17.957   3.624  1.00   .00
ATOM    344  N   ILE    42      37.621  16.379   2.600  1.00   .00
ATOM    345  CA  ILE    42      39.092  15.861   2.683  1.00   .00
ATOM    346  C   ILE    42      40.021  16.443   1.460  1.00   .00
ATOM    347  O   ILE    42      41.091  17.006   1.711  1.00   .00
ATOM    348  CB  ILE    42      39.009  14.290   2.750  1.00   .00
ATOM    352  N   THR    43      39.530  16.361   0.144  1.00   .00
ATOM    353  CA  THR    43      40.302  17.000  -1.064  1.00   .00
ATOM    354  C   THR    43      40.612  18.625  -0.827  1.00   .00
ATOM    355  O   THR    43      41.750  19.080  -1.016  1.00   .00
ATOM    356  CB  THR    43      39.467  16.699  -2.342  1.00   .00
ATOM    359  N   GLN    44      39.582  19.423  -0.321  1.00   .00
ATOM    360  CA  GLN    44      39.800  20.925   0.041  1.00   .00
ATOM    361  C   GLN    44      40.542  21.127   1.544  1.00   .00
ATOM    362  O   GLN    44      40.164  21.997   2.345  1.00   .00
ATOM    363  CB  GLN    44      38.373  21.570  -0.007  1.00   .00
ATOM    368  N   SER    45      41.585  20.267   1.848  1.00   .00
ATOM    369  CA  SER    45      42.395  20.286   3.221  1.00   .00
ATOM    370  C   SER    45      41.563  19.989   4.641  1.00   .00
ATOM    371  O   SER    45      42.142  20.111   5.743  1.00   .00
ATOM    372  CB  SER    45      43.256  21.582   3.265  1.00   .00
ATOM    374  N   GLY    46      40.249  19.567   4.589  1.00   .00
ATOM    375  CA  GLY    46      39.412  19.243   5.891  1.00   .00
ATOM    376  C   GLY    46      39.941  17.986   6.711  1.00   .00
ATOM    377  O   GLY    46      40.272  16.933   6.144  1.00   .00
ATOM    378  N   ILE    47      40.038  18.152   8.066  1.00   .00
ATOM    379  CA  ILE    47      40.593  17.015   9.030  1.00   .00
ATOM    380  C   ILE    47      42.220  16.780   8.870  1.00   .00
ATOM    381  O   ILE    47      42.958  16.866   9.834  1.00   .00
ATOM    382  CB  ILE    47      39.698  15.712   8.990  1.00   .00
ATOM    386  N   LEU    48      42.736  16.538   7.624  1.00   .00
ATOM    387  CA  LEU    48      44.268  16.380   7.386  1.00   .00
ATOM    388  C   LEU    48      45.183  17.712   7.777  1.00   .00
ATOM    389  O   LEU    48      46.308  17.547   8.264  1.00   .00
ATOM    390  CB  LEU    48      44.411  15.971   5.918  1.00   .00
ATOM    394  N   SER    49      44.669  18.981   7.566  1.00   .00
ATOM    395  CA  SER    49      45.479  20.281   7.950  1.00   .00
ATOM    396  C   SER    49      45.766  20.435   9.570  1.00   .00
ATOM    397  O   SER    49      46.906  20.606   9.991  1.00   .00
ATOM    398  CB  SER    49      44.681  21.489   7.354  1.00   .00
ATOM    400  N   GLN    50      44.681  20.343  10.438  1.00   .00
ATOM    401  CA  GLN    50      44.867  20.426  12.007  1.00   .00
ATOM    402  C   GLN    50      45.019  18.939  12.769  1.00   .00
ATOM    403  O   GLN    50      44.993  18.840  13.987  1.00   .00
ATOM    404  CB  GLN    50      43.624  21.217  12.540  1.00   .00
ATOM    409  N   PHE    51      45.153  17.821  11.950  1.00   .00
ATOM    410  CA  PHE    51      45.277  16.368  12.470  1.00   .00
ATOM    411  C   PHE    51      44.181  15.721  13.585  1.00   .00
ATOM    412  O   PHE    51      44.628  14.921  14.443  1.00   .00
ATOM    413  CB  PHE    51      46.773  16.169  12.880  1.00   .00
ATOM    420  N   PRO    52      42.745  15.987  13.585  1.00   .00
ATOM    421  CA  PRO    52      41.772  15.327  14.590  1.00   .00
ATOM    422  C   PRO    52      41.595  13.702  14.293  1.00   .00
ATOM    423  O   PRO    52      40.617  13.252  13.673  1.00   .00
ATOM    424  CB  PRO    52      40.465  16.203  14.348  1.00   .00
ATOM    425  CG  PRO    52      40.911  17.427  13.548  1.00   .00
ATOM    426  CD  PRO    52      42.035  16.885  12.656  1.00   .00
ATOM    427  N   GLU    53      42.590  12.901  14.772  1.00   .00
ATOM    428  CA  GLU    53      42.633  11.337  14.620  1.00   .00
ATOM    429  C   GLU    53      41.925  10.599  13.303  1.00   .00
ATOM    430  O   GLU    53      40.966   9.819  13.414  1.00   .00
ATOM    431  CB  GLU    53      42.117  10.781  15.996  1.00   .00
ATOM    436  N   ILE    54      42.471  10.852  12.062  1.00   .00
ATOM    437  CA  ILE    54      41.906  10.175  10.760  1.00   .00
ATOM    438  C   ILE    54      42.471   8.635  10.526  1.00   .00
ATOM    439  O   ILE    54      43.249   8.352   9.600  1.00   .00
ATOM    440  CB  ILE    54      42.233  11.158   9.580  1.00   .00
ATOM    444  N   ASP    55      42.066   7.682  11.422  1.00   .00
ATOM    445  CA  ASP    55      42.576   6.206  11.345  1.00   .00
ATOM    446  C   ASP    55      42.005   5.311  10.074  1.00   .00
ATOM    447  O   ASP    55      40.795   5.200   9.842  1.00   .00
ATOM    448  CB  ASP    55      42.177   5.573  12.714  1.00   .00
ATOM    452  N   LEU    56      42.949   4.677   9.304  1.00   .00
ATOM    453  CA  LEU    56      42.555   3.754   8.108  1.00   .00
ATOM    454  C   LEU    56      42.490   2.159   8.577  1.00   .00
ATOM    455  O   LEU    56      42.253   1.861   9.748  1.00   .00
ATOM    456  CB  LEU    56      43.632   4.104   7.010  1.00   .00
TER   
END
