
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   46 (  232),  selected   46 , name T0363TS437_5-D1
# Molecule2: number of CA atoms   46 (  372),  selected   46 , name T0363_D1.pdb
# PARAMETERS: T0363TS437_5-D1.T0363_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      N      11           -
LGA    -       -      Q      12           -
LGA    N      11      I      13          2.182
LGA    Q      12      N      14          0.766
LGA    I      13      I      15          0.818
LGA    N      14      E      16          0.672
LGA    I      15      I      17          0.932
LGA    E      16      A      18          1.646
LGA    I      17      Y      19          0.760
LGA    A      18      A      20          0.338
LGA    Y      19      F      21          2.555
LGA    A      20      -       -           -
LGA    F      21      P      22          2.820
LGA    P      22      E      23          0.735
LGA    E      23      R      24          1.623
LGA    R      24      Y      25          0.274
LGA    Y      25      Y      26          0.839
LGA    Y      26      L      27          1.526
LGA    L      27      K      28          2.948
LGA    K      28      S      29          2.034
LGA    S      29      F      30          2.473
LGA    F      30      Q      31          0.548
LGA    Q      31      V      32          1.474
LGA    V      32      D      33          4.049
LGA    -       -      E      34           -
LGA    -       -      G      35           -
LGA    D      33      I      36           #
LGA    E      34      T      37           -
LGA    -       -      V      38           -
LGA    -       -      Q      39           -
LGA    -       -      T      40           -
LGA    -       -      A      41           -
LGA    -       -      I      42           -
LGA    -       -      T      43           -
LGA    G      35      Q      44          5.962
LGA    I      36      S      45          3.832
LGA    T      37      -       -           -
LGA    V      38      -       -           -
LGA    Q      39      -       -           -
LGA    T      40      -       -           -
LGA    A      41      -       -           -
LGA    I      42      -       -           -
LGA    T      43      -       -           -
LGA    Q      44      -       -           -
LGA    S      45      -       -           -
LGA    G      46      G      46          2.552
LGA    I      47      I      47          2.092
LGA    L      48      L      48          2.636
LGA    -       -      S      49           -
LGA    S      49      Q      50          3.856
LGA    Q      50      F      51          1.844
LGA    F      51      P      52           #
LGA    P      52      E      53          1.820
LGA    E      53      I      54          3.109
LGA    I      54      D      55           #
LGA    D      55      L      56          4.956
LGA    L      56      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   46   46    5.0     31    2.50    22.58     50.149     1.194

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.183811 * X  +   0.632035 * Y  +   0.752825 * Z  +  89.878227
  Y_new =   0.575743 * X  +   0.689975 * Y  +  -0.438695 * Z  + -42.965927
  Z_new =  -0.796701 * X  +   0.352797 * Y  +  -0.490715 * Z  + 155.777130 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.518266   -0.623327  [ DEG:   144.2860    -35.7140 ]
  Theta =   0.921817    2.219775  [ DEG:    52.8162    127.1838 ]
  Phi   =   1.879827   -1.261766  [ DEG:   107.7062    -72.2938 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0363TS437_5-D1                               
REMARK     2: T0363_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0363TS437_5-D1.T0363_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   46   46   5.0   31   2.50   22.58  50.149
REMARK  ---------------------------------------------------------- 
MOLECULE T0363TS437_5-D1
PFRMAT TS
TARGET T0363
MODEL     5 REFINED
PARENT N/A
ATOM     88  N   ASN    11      17.131   6.329  10.977  1.00   .00
ATOM     89  CA  ASN    11      16.476   7.356  10.019  1.00   .00
ATOM     90  C   ASN    11      17.536   7.982   8.922  1.00   .00
ATOM     91  O   ASN    11      18.650   8.422   9.273  1.00   .00
ATOM     92  CB  ASN    11      15.874   8.459  10.943  1.00   .00
ATOM     96  N   GLN    12      17.115   7.991   7.619  1.00   .00
ATOM     97  CA  GLN    12      18.010   8.532   6.468  1.00   .00
ATOM     98  C   GLN    12      18.551  10.096   6.620  1.00   .00
ATOM     99  O   GLN    12      17.782  11.063   6.473  1.00   .00
ATOM    100  CB  GLN    12      17.178   8.337   5.163  1.00   .00
ATOM    105  N   ILE    13      19.883  10.268   6.904  1.00   .00
ATOM    106  CA  ILE    13      20.503  11.677   7.061  1.00   .00
ATOM    107  C   ILE    13      21.042  12.288   5.633  1.00   .00
ATOM    108  O   ILE    13      21.814  11.639   4.900  1.00   .00
ATOM    109  CB  ILE    13      21.660  11.538   8.113  1.00   .00
ATOM    113  N   ASN    14      20.589  13.538   5.274  1.00   .00
ATOM    114  CA  ASN    14      21.007  14.211   3.937  1.00   .00
ATOM    115  C   ASN    14      21.939  15.501   4.236  1.00   .00
ATOM    116  O   ASN    14      21.437  16.594   4.588  1.00   .00
ATOM    117  CB  ASN    14      19.691  14.538   3.167  1.00   .00
ATOM    121  N   ILE    15      23.290  15.356   4.091  1.00   .00
ATOM    122  CA  ILE    15      24.262  16.538   4.348  1.00   .00
ATOM    123  C   ILE    15      24.582  17.376   2.988  1.00   .00
ATOM    124  O   ILE    15      25.303  16.916   2.090  1.00   .00
ATOM    125  CB  ILE    15      25.533  15.947   5.038  1.00   .00
ATOM    129  N   GLU    16      24.008  18.626   2.870  1.00   .00
ATOM    130  CA  GLU    16      24.241  19.532   1.649  1.00   .00
ATOM    131  C   GLU    16      25.493  20.542   1.937  1.00   .00
ATOM    132  O   GLU    16      25.338  21.604   2.570  1.00   .00
ATOM    133  CB  GLU    16      22.894  20.262   1.360  1.00   .00
ATOM    138  N   ILE    17      26.723  20.158   1.460  1.00   .00
ATOM    139  CA  ILE    17      27.985  21.024   1.672  1.00   .00
ATOM    140  C   ILE    17      28.190  22.127   0.491  1.00   .00
ATOM    141  O   ILE    17      28.396  21.777  -0.675  1.00   .00
ATOM    142  CB  ILE    17      29.163  20.008   1.771  1.00   .00
ATOM    146  N   ALA    18      28.121  23.450   0.842  1.00   .00
ATOM    147  CA  ALA    18      28.307  24.595  -0.193  1.00   .00
ATOM    148  C   ALA    18      29.713  25.380   0.094  1.00   .00
ATOM    149  O   ALA    18      29.923  25.974   1.173  1.00   .00
ATOM    150  CB  ALA    18      27.058  25.518  -0.079  1.00   .00
ATOM    151  N   TYR    19      30.655  25.334  -0.899  1.00   .00
ATOM    152  CA  TYR    19      32.036  26.024  -0.747  1.00   .00
ATOM    153  C   TYR    19      32.067  27.594  -1.232  1.00   .00
ATOM    154  O   TYR    19      31.118  28.115  -1.833  1.00   .00
ATOM    155  CB  TYR    19      33.000  25.131  -1.599  1.00   .00
ATOM    163  N   ALA    20      33.215  28.356  -0.991  1.00   .00
ATOM    164  CA  ALA    20      33.312  29.878  -1.528  1.00   .00
ATOM    165  C   ALA    20      33.657  29.952  -3.159  1.00   .00
ATOM    166  O   ALA    20      34.588  30.607  -3.649  1.00   .00
ATOM    167  CB  ALA    20      34.358  30.579  -0.661  1.00   .00
ATOM    168  N   PHE    21      32.823  29.220  -3.890  1.00   .00
ATOM    169  CA  PHE    21      32.848  29.040  -5.397  1.00   .00
ATOM    170  C   PHE    21      31.371  28.402  -5.771  1.00   .00
ATOM    171  O   PHE    21      30.701  27.805  -4.891  1.00   .00
ATOM    172  CB  PHE    21      34.010  28.026  -5.741  1.00   .00
ATOM    179  N   PRO    22      30.798  28.480  -7.071  1.00   .00
ATOM    180  CA  PRO    22      29.404  27.823  -7.367  1.00   .00
ATOM    181  C   PRO    22      29.467  26.157  -7.403  1.00   .00
ATOM    182  O   PRO    22      29.166  25.492  -8.409  1.00   .00
ATOM    183  CB  PRO    22      29.101  28.521  -8.735  1.00   .00
ATOM    184  CG  PRO    22      30.503  28.774  -9.397  1.00   .00
ATOM    185  CD  PRO    22      31.457  29.155  -8.235  1.00   .00
ATOM    186  N   GLU    23      29.875  25.573  -6.237  1.00   .00
ATOM    187  CA  GLU    23      30.038  24.072  -6.057  1.00   .00
ATOM    188  C   GLU    23      29.261  23.531  -4.735  1.00   .00
ATOM    189  O   GLU    23      29.706  23.723  -3.569  1.00   .00
ATOM    190  CB  GLU    23      31.577  23.808  -5.995  1.00   .00
ATOM    195  N   ARG    24      28.105  22.832  -4.974  1.00   .00
ATOM    196  CA  ARG    24      27.269  22.216  -3.846  1.00   .00
ATOM    197  C   ARG    24      27.413  20.592  -3.879  1.00   .00
ATOM    198  O   ARG    24      27.230  19.955  -4.924  1.00   .00
ATOM    199  CB  ARG    24      25.792  22.691  -4.055  1.00   .00
ATOM    206  N   TYR    25      27.730  19.965  -2.718  1.00   .00
ATOM    207  CA  TYR    25      27.872  18.427  -2.636  1.00   .00
ATOM    208  C   TYR    25      26.753  17.787  -1.629  1.00   .00
ATOM    209  O   TYR    25      26.847  17.879  -0.380  1.00   .00
ATOM    210  CB  TYR    25      29.331  18.135  -2.195  1.00   .00
ATOM    218  N   TYR    26      25.702  17.128  -2.227  1.00   .00
ATOM    219  CA  TYR    26      24.559  16.469  -1.386  1.00   .00
ATOM    220  C   TYR    26      24.891  14.923  -0.964  1.00   .00
ATOM    221  O   TYR    26      24.712  13.992  -1.766  1.00   .00
ATOM    222  CB  TYR    26      23.274  16.619  -2.239  1.00   .00
ATOM    230  N   LEU    27      25.373  14.707   0.310  1.00   .00
ATOM    231  CA  LEU    27      25.739  13.295   0.831  1.00   .00
ATOM    232  C   LEU    27      24.470  12.558   1.561  1.00   .00
ATOM    233  O   LEU    27      24.086  12.866   2.715  1.00   .00
ATOM    234  CB  LEU    27      26.970  13.469   1.764  1.00   .00
ATOM    238  N   LYS    28      23.841  11.584   0.825  1.00   .00
ATOM    239  CA  LYS    28      22.617  10.802   1.370  1.00   .00
ATOM    240  C   LYS    28      23.016   9.418   2.162  1.00   .00
ATOM    241  O   LYS    28      23.370   8.378   1.555  1.00   .00
ATOM    242  CB  LYS    28      21.727  10.524   0.130  1.00   .00
ATOM    247  N   SER    29      22.928   9.455   3.535  1.00   .00
ATOM    248  CA  SER    29      23.241   8.217   4.417  1.00   .00
ATOM    249  C   SER    29      21.865   7.463   4.828  1.00   .00
ATOM    250  O   SER    29      21.280   7.729   5.892  1.00   .00
ATOM    251  CB  SER    29      24.056   8.733   5.631  1.00   .00
ATOM    253  N   PHE    30      21.362   6.516   3.942  1.00   .00
ATOM    254  CA  PHE    30      20.031   5.710   4.232  1.00   .00
ATOM    255  C   PHE    30      20.066   4.895   5.659  1.00   .00
ATOM    256  O   PHE    30      19.281   5.161   6.574  1.00   .00
ATOM    257  CB  PHE    30      19.783   4.798   2.982  1.00   .00
ATOM    264  N   GLN    31      21.047   3.965   5.788  1.00   .00
ATOM    265  CA  GLN    31      21.314   3.198   7.079  1.00   .00
ATOM    266  C   GLN    31      22.888   3.527   7.351  1.00   .00
ATOM    267  O   GLN    31      23.766   3.169   6.514  1.00   .00
ATOM    268  CB  GLN    31      21.016   1.683   6.845  1.00   .00
ATOM    273  N   VAL    32      23.228   4.242   8.484  1.00   .00
ATOM    274  CA  VAL    32      24.727   4.638   8.799  1.00   .00
ATOM    275  C   VAL    32      25.721   3.355   9.178  1.00   .00
ATOM    276  O   VAL    32      26.270   3.208  10.260  1.00   .00
ATOM    277  CB  VAL    32      24.624   5.740   9.881  1.00   .00
ATOM    280  N   ASP    33      25.866   2.516   8.149  1.00   .00
ATOM    281  CA  ASP    33      26.709   1.227   8.125  1.00   .00
ATOM    282  C   ASP    33      26.915   0.719   6.557  1.00   .00
ATOM    283  O   ASP    33      27.982   0.221   6.190  1.00   .00
ATOM    284  CB  ASP    33      26.026   0.132   9.016  1.00   .00
ATOM    288  N   GLU    34      25.831   0.898   5.668  1.00   .00
ATOM    289  CA  GLU    34      25.905   0.510   4.175  1.00   .00
ATOM    290  C   GLU    34      26.891   1.463   3.265  1.00   .00
ATOM    291  O   GLU    34      27.690   0.955   2.469  1.00   .00
ATOM    292  CB  GLU    34      24.417   0.536   3.652  1.00   .00
ATOM    297  N   GLY    35      26.792   2.846   3.401  1.00   .00
ATOM    298  CA  GLY    35      27.700   3.813   2.573  1.00   .00
ATOM    299  C   GLY    35      27.001   5.152   2.105  1.00   .00
ATOM    300  O   GLY    35      26.147   5.127   1.206  1.00   .00
ATOM    301  N   ILE    36      27.368   6.324   2.717  1.00   .00
ATOM    302  CA  ILE    36      26.741   7.703   2.315  1.00   .00
ATOM    303  C   ILE    36      26.996   8.125   0.733  1.00   .00
ATOM    304  O   ILE    36      28.143   8.347   0.287  1.00   .00
ATOM    305  CB  ILE    36      27.314   8.773   3.309  1.00   .00
ATOM    309  N   THR    37      25.887   8.204  -0.061  1.00   .00
ATOM    310  CA  THR    37      25.985   8.546  -1.564  1.00   .00
ATOM    311  C   THR    37      26.051  10.153  -1.882  1.00   .00
ATOM    312  O   THR    37      25.086  10.901  -1.653  1.00   .00
ATOM    313  CB  THR    37      24.749   7.861  -2.227  1.00   .00
ATOM    316  N   VAL    38      27.214  10.637  -2.432  1.00   .00
ATOM    317  CA  VAL    38      27.373  12.138  -2.823  1.00   .00
ATOM    318  C   VAL    38      26.736  12.432  -4.321  1.00   .00
ATOM    319  O   VAL    38      27.307  12.054  -5.350  1.00   .00
ATOM    320  CB  VAL    38      28.884  12.460  -2.720  1.00   .00
ATOM    323  N   GLN    39      25.535  13.097  -4.372  1.00   .00
ATOM    324  CA  GLN    39      24.818  13.392  -5.747  1.00   .00
ATOM    325  C   GLN    39      25.273  14.703  -6.642  1.00   .00
ATOM    326  O   GLN    39      24.595  15.027  -7.640  1.00   .00
ATOM    327  CB  GLN    39      23.299  13.428  -5.402  1.00   .00
ATOM    332  N   THR    40      26.399  15.429  -6.289  1.00   .00
ATOM    333  CA  THR    40      26.868  16.662  -7.127  1.00   .00
ATOM    334  C   THR    40      28.511  16.887  -7.062  1.00   .00
ATOM    335  O   THR    40      29.242  16.089  -7.653  1.00   .00
ATOM    336  CB  THR    40      25.927  17.894  -6.787  1.00   .00
ATOM    339  N   ALA    41      29.053  17.970  -6.400  1.00   .00
ATOM    340  CA  ALA    41      30.619  18.215  -6.404  1.00   .00
ATOM    341  C   ALA    41      31.581  17.389  -5.314  1.00   .00
ATOM    342  O   ALA    41      32.417  17.982  -4.601  1.00   .00
ATOM    343  CB  ALA    41      30.759  19.771  -6.296  1.00   .00
ATOM    344  N   ILE    42      31.455  16.026  -5.263  1.00   .00
ATOM    345  CA  ILE    42      32.349  15.125  -4.315  1.00   .00
ATOM    346  C   ILE    42      32.201  13.561  -4.729  1.00   .00
ATOM    347  O   ILE    42      31.106  13.088  -5.053  1.00   .00
ATOM    348  CB  ILE    42      31.968  15.341  -2.788  1.00   .00
ATOM    352  N   THR    43      33.335  12.780  -4.678  1.00   .00
ATOM    353  CA  THR    43      33.292  11.258  -5.015  1.00   .00
ATOM    354  C   THR    43      32.992  10.348  -3.657  1.00   .00
ATOM    355  O   THR    43      33.247  10.762  -2.525  1.00   .00
ATOM    356  CB  THR    43      34.649  10.929  -5.720  1.00   .00
ATOM    359  N   GLN    44      32.425   9.095  -3.843  1.00   .00
ATOM    360  CA  GLN    44      32.058   8.187  -2.616  1.00   .00
ATOM    361  C   GLN    44      33.271   7.522  -1.685  1.00   .00
ATOM    362  O   GLN    44      33.007   7.132  -0.528  1.00   .00
ATOM    363  CB  GLN    44      31.100   7.110  -3.179  1.00   .00
ATOM    368  N   SER    45      34.562   7.416  -2.172  1.00   .00
ATOM    369  CA  SER    45      35.747   6.830  -1.278  1.00   .00
ATOM    370  C   SER    45      36.246   7.965  -0.190  1.00   .00
ATOM    371  O   SER    45      37.326   8.558  -0.300  1.00   .00
ATOM    372  CB  SER    45      36.873   6.381  -2.262  1.00   .00
ATOM    374  N   GLY    46      35.343   8.248   0.808  1.00   .00
ATOM    375  CA  GLY    46      35.581   9.394   1.869  1.00   .00
ATOM    376  C   GLY    46      34.858  10.697   1.292  1.00   .00
ATOM    377  O   GLY    46      35.514  11.594   0.796  1.00   .00
ATOM    378  N   ILE    47      33.478  10.706   1.343  1.00   .00
ATOM    379  CA  ILE    47      32.572  11.842   0.739  1.00   .00
ATOM    380  C   ILE    47      32.790  13.440   1.122  1.00   .00
ATOM    381  O   ILE    47      31.814  14.198   1.256  1.00   .00
ATOM    382  CB  ILE    47      31.104  11.352   1.036  1.00   .00
ATOM    386  N   LEU    48      34.071  13.901   1.245  1.00   .00
ATOM    387  CA  LEU    48      34.383  15.405   1.579  1.00   .00
ATOM    388  C   LEU    48      35.879  15.964   1.247  1.00   .00
ATOM    389  O   LEU    48      36.077  17.186   1.346  1.00   .00
ATOM    390  CB  LEU    48      34.091  15.619   3.064  1.00   .00
ATOM    394  N   SER    49      36.907  15.106   0.856  1.00   .00
ATOM    395  CA  SER    49      38.367  15.674   0.526  1.00   .00
ATOM    396  C   SER    49      38.458  16.543  -0.912  1.00   .00
ATOM    397  O   SER    49      39.224  16.281  -1.848  1.00   .00
ATOM    398  CB  SER    49      39.342  14.471   0.619  1.00   .00
ATOM    400  N   GLN    50      37.611  17.575  -0.917  1.00   .00
ATOM    401  CA  GLN    50      37.420  18.607  -2.053  1.00   .00
ATOM    402  C   GLN    50      36.975  20.060  -1.355  1.00   .00
ATOM    403  O   GLN    50      37.483  21.123  -1.715  1.00   .00
ATOM    404  CB  GLN    50      36.341  18.046  -3.042  1.00   .00
ATOM    409  N   PHE    51      36.047  20.002  -0.299  1.00   .00
ATOM    410  CA  PHE    51      35.624  21.210   0.496  1.00   .00
ATOM    411  C   PHE    51      36.441  21.097   1.941  1.00   .00
ATOM    412  O   PHE    51      35.954  20.401   2.852  1.00   .00
ATOM    413  CB  PHE    51      34.051  21.121   0.639  1.00   .00
ATOM    420  N   PRO    52      37.710  21.751   2.168  1.00   .00
ATOM    421  CA  PRO    52      38.503  21.602   3.510  1.00   .00
ATOM    422  C   PRO    52      37.842  22.342   4.833  1.00   .00
ATOM    423  O   PRO    52      38.431  23.220   5.491  1.00   .00
ATOM    424  CB  PRO    52      39.893  22.162   3.058  1.00   .00
ATOM    425  CG  PRO    52      39.564  23.202   1.940  1.00   .00
ATOM    426  CD  PRO    52      38.399  22.587   1.128  1.00   .00
ATOM    427  N   GLU    53      36.614  21.910   5.141  1.00   .00
ATOM    428  CA  GLU    53      35.793  22.434   6.319  1.00   .00
ATOM    429  C   GLU    53      34.809  21.227   6.865  1.00   .00
ATOM    430  O   GLU    53      34.924  20.799   8.017  1.00   .00
ATOM    431  CB  GLU    53      35.016  23.728   5.839  1.00   .00
ATOM    436  N   ILE    54      33.854  20.701   5.994  1.00   .00
ATOM    437  CA  ILE    54      32.889  19.570   6.430  1.00   .00
ATOM    438  C   ILE    54      33.422  18.035   6.159  1.00   .00
ATOM    439  O   ILE    54      32.919  17.354   5.266  1.00   .00
ATOM    440  CB  ILE    54      31.537  19.883   5.700  1.00   .00
ATOM    444  N   ASP    55      34.439  17.535   6.944  1.00   .00
ATOM    445  CA  ASP    55      35.031  16.084   6.722  1.00   .00
ATOM    446  C   ASP    55      34.018  14.780   6.995  1.00   .00
ATOM    447  O   ASP    55      34.090  14.076   8.011  1.00   .00
ATOM    448  CB  ASP    55      36.322  16.014   7.594  1.00   .00
ATOM    452  N   LEU    56      33.109  14.503   5.999  1.00   .00
ATOM    453  CA  LEU    56      32.121  13.329   6.083  1.00   .00
ATOM    454  C   LEU    56      32.763  11.846   5.681  1.00   .00
ATOM    455  O   LEU    56      33.246  11.614   4.553  1.00   .00
ATOM    456  CB  LEU    56      30.925  13.700   5.158  1.00   .00
TER   
END
