
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   46 (  184),  selected   46 , name T0363TS474_1-D1
# Molecule2: number of CA atoms   46 (  372),  selected   46 , name T0363_D1.pdb
# PARAMETERS: T0363TS474_1-D1.T0363_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    N      11      -       -           -
LGA    Q      12      -       -           -
LGA    I      13      -       -           -
LGA    N      14      -       -           -
LGA    I      15      -       -           -
LGA    E      16      -       -           -
LGA    I      17      -       -           -
LGA    A      18      -       -           -
LGA    Y      19      -       -           -
LGA    A      20      -       -           -
LGA    F      21      -       -           -
LGA    P      22      -       -           -
LGA    E      23      -       -           -
LGA    R      24      -       -           -
LGA    Y      25      -       -           -
LGA    Y      26      -       -           -
LGA    L      27      -       -           -
LGA    K      28      -       -           -
LGA    S      29      -       -           -
LGA    F      30      -       -           -
LGA    Q      31      -       -           -
LGA    V      32      N      11          3.137
LGA    D      33      Q      12          2.090
LGA    E      34      I      13          2.808
LGA    G      35      N      14          5.297
LGA    I      36      -       -           -
LGA    T      37      I      15          2.204
LGA    V      38      E      16          1.700
LGA    Q      39      I      17          1.916
LGA    T      40      A      18          1.457
LGA    A      41      Y      19          1.168
LGA    I      42      A      20          1.019
LGA    T      43      F      21          2.064
LGA    Q      44      P      22          3.795
LGA    S      45      E      23           -
LGA    G      46      -       -           -
LGA    I      47      R      24           #
LGA    -       -      Y      25           -
LGA    -       -      Y      26           -
LGA    -       -      L      27           -
LGA    -       -      K      28           -
LGA    -       -      S      29           -
LGA    -       -      F      30           -
LGA    -       -      Q      31           -
LGA    -       -      V      32           -
LGA    -       -      D      33           -
LGA    -       -      E      34           -
LGA    -       -      G      35           -
LGA    -       -      I      36           -
LGA    -       -      T      37           -
LGA    -       -      V      38           -
LGA    -       -      Q      39           -
LGA    -       -      T      40           -
LGA    -       -      A      41           -
LGA    -       -      I      42           -
LGA    -       -      T      43           -
LGA    -       -      Q      44           -
LGA    -       -      S      45           -
LGA    -       -      G      46           -
LGA    -       -      I      47           -
LGA    -       -      L      48           -
LGA    L      48      S      49           #
LGA    S      49      Q      50          0.940
LGA    Q      50      F      51           #
LGA    F      51      -       -           -
LGA    P      52      -       -           -
LGA    E      53      -       -           -
LGA    I      54      P      52          2.723
LGA    D      55      E      53          2.555
LGA    L      56      I      54          4.817
LGA    -       -      D      55           -
LGA    -       -      L      56           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   46   46    5.0     16    2.77     0.00     25.038     0.557

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.595573 * X  +  -0.282044 * Y  +  -0.752159 * Z  +  15.984366
  Y_new =  -0.209403 * X  +   0.958473 * Y  +  -0.193598 * Z  + -11.368909
  Z_new =   0.775527 * X  +   0.042203 * Y  +  -0.629902 * Z  +   7.313415 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   3.074693   -0.066900  [ DEG:   176.1669     -3.8331 ]
  Theta =  -0.887550   -2.254043  [ DEG:   -50.8529   -129.1471 ]
  Phi   =  -2.803493    0.338099  [ DEG:  -160.6283     19.3717 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0363TS474_1-D1                               
REMARK     2: T0363_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0363TS474_1-D1.T0363_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   46   46   5.0   16   2.77    0.00  25.038
REMARK  ---------------------------------------------------------- 
MOLECULE T0363TS474_1-D1
PFRMAT TS
TARGET T0363
MODEL 1
PARENT N/A
ATOM      1  N   ASN    11       9.461  -4.094  14.759  1.00 55.17
ATOM      2  CA  ASN    11       8.489  -5.175  15.087  1.00 53.52
ATOM      3  C   ASN    11       9.007  -6.596  14.830  1.00 52.37
ATOM      4  O   ASN    11       8.303  -7.558  15.119  1.00 49.62
ATOM      5  N   GLN    12      10.240  -6.728  14.325  1.00 51.89
ATOM      6  CA  GLN    12      10.843  -8.047  14.100  1.00 50.26
ATOM      7  C   GLN    12      11.076  -8.778  15.409  1.00 47.10
ATOM      8  O   GLN    12      11.236  -9.997  15.401  1.00 47.42
ATOM      9  N   ILE    13      11.117  -8.046  16.528  1.00 42.04
ATOM     10  CA  ILE    13      11.300  -8.678  17.836  1.00 41.31
ATOM     11  C   ILE    13      10.156  -9.637  18.194  1.00 38.93
ATOM     12  O   ILE    13      10.347 -10.540  18.997  1.00 37.88
ATOM     13  N   ASN    14       8.980  -9.396  17.610  1.00 40.67
ATOM     14  CA  ASN    14       8.466  -8.708  18.772  1.00 42.18
ATOM     15  C   ASN    14       6.956  -8.904  18.840  1.00 42.08
ATOM     16  O   ASN    14       6.278  -8.716  17.837  1.00 40.89
ATOM     17  N   ILE    15       6.421  -9.235  20.015  1.00 40.81
ATOM     18  CA  ILE    15       4.976  -9.369  20.163  1.00 40.70
ATOM     19  C   ILE    15       4.327  -8.015  19.969  1.00 37.68
ATOM     20  O   ILE    15       4.726  -7.063  20.612  1.00 35.27
ATOM     21  N   GLU    16       3.320  -7.944  19.102  1.00 37.03
ATOM     22  CA  GLU    16       2.558  -6.717  18.882  1.00 37.24
ATOM     23  C   GLU    16       1.885  -6.189  20.140  1.00 38.74
ATOM     24  O   GLU    16       1.193  -6.914  20.842  1.00 38.36
ATOM     25  N   ILE    17       2.090  -4.913  20.423  1.00 42.05
ATOM     26  CA  ILE    17       1.462  -4.272  21.573  1.00 43.29
ATOM     27  C   ILE    17      -0.057  -4.236  21.429  1.00 41.03
ATOM     28  O   ILE    17      -0.573  -3.982  20.352  1.00 40.23
ATOM     29  N   ALA    18      -0.756  -4.456  22.536  1.00 42.35
ATOM     30  CA  ALA    18      -2.210  -4.253  22.614  1.00 43.89
ATOM     31  C   ALA    18      -2.643  -2.826  22.261  1.00 43.72
ATOM     32  O   ALA    18      -3.819  -2.591  22.016  1.00 44.40
ATOM     33  N   TYR    19      -1.703  -1.883  22.247  1.00 45.37
ATOM     34  CA  TYR    19      -1.968  -0.517  21.801  1.00 44.60
ATOM     35  C   TYR    19      -2.345  -0.455  20.318  1.00 43.48
ATOM     36  O   TYR    19      -3.022   0.473  19.893  1.00 42.07
ATOM     37  N   ALA    20      -1.861  -1.406  19.519  1.00 41.43
ATOM     38  CA  ALA    20      -2.047  -1.356  18.069  1.00 38.06
ATOM     39  C   ALA    20      -2.746  -2.583  17.476  1.00 37.41
ATOM     40  O   ALA    20      -3.210  -2.525  16.340  1.00 35.30
ATOM     41  N   PHE    21      -2.770  -3.681  18.235  1.00 35.86
ATOM     42  CA  PHE    21      -3.261  -4.980  17.781  1.00 35.70
ATOM     43  C   PHE    21      -4.253  -5.596  18.743  1.00 37.05
ATOM     44  O   PHE    21      -4.156  -5.421  19.952  1.00 37.84
ATOM     45  N   PRO    22      -5.195  -6.345  18.178  1.00 38.84
ATOM     46  CA  PRO    22      -6.052  -7.264  18.898  1.00 38.85
ATOM     47  C   PRO    22      -5.532  -8.675  18.710  1.00 37.94
ATOM     48  O   PRO    22      -5.225  -9.100  17.600  1.00 36.75
ATOM     49  N   GLU    23      -5.402  -9.407  19.804  1.00 34.51
ATOM     50  CA  GLU    23      -4.893 -10.765  19.716  1.00 34.69
ATOM     51  C   GLU    23      -3.380 -10.886  19.594  1.00 36.60
ATOM     52  O   GLU    23      -2.641  -9.937  19.850  1.00 35.32
ATOM     53  N   ARG    24      -2.937 -12.072  19.185  1.00 35.10
ATOM     54  CA  ARG    24      -1.523 -12.429  19.204  1.00 34.88
ATOM     55  C   ARG    24      -0.922 -12.226  17.814  1.00 36.20
ATOM     56  O   ARG    24      -1.333 -12.866  16.846  1.00 34.83
ATOM     57  N   TYR    25       0.073 -11.340  17.760  1.00 35.82
ATOM     58  CA  TYR    25       0.699 -10.888  16.521  1.00 37.20
ATOM     59  C   TYR    25       2.186 -10.788  16.819  1.00 38.68
ATOM     60  O   TYR    25       2.559 -10.355  17.911  1.00 37.88
ATOM     61  N   TYR    26       3.026 -11.181  15.866  1.00 39.12
ATOM     62  CA  TYR    26       4.469 -10.975  16.016  1.00 38.59
ATOM     63  C   TYR    26       4.994 -10.252  14.803  1.00 38.90
ATOM     64  O   TYR    26       4.621 -10.543  13.671  1.00 37.19
ATOM     65  N   LEU    27       5.825  -9.255  15.082  1.00 39.06
ATOM     66  CA  LEU    27       6.351  -8.363  14.061  1.00 38.47
ATOM     67  C   LEU    27       7.874  -8.448  14.025  1.00 38.52
ATOM     68  O   LEU    27       8.538  -8.360  15.076  1.00 39.39
ATOM     69  N   LYS    28       8.415  -8.665  12.828  1.00 38.71
ATOM     70  CA  LYS    28       9.858  -8.607  12.599  1.00 39.03
ATOM     71  C   LYS    28      10.136  -7.493  11.595  1.00 39.19
ATOM     72  O   LYS    28       9.653  -7.533  10.476  1.00 35.88
ATOM     73  N   SER    29      10.910  -6.503  12.008  1.00 40.48
ATOM     74  CA  SER    29      11.331  -5.438  11.117  1.00 42.57
ATOM     75  C   SER    29      12.373  -5.977  10.151  1.00 41.93
ATOM     76  O   SER    29      13.339  -6.622  10.564  1.00 45.04
ATOM     77  N   PHE    30      12.185  -5.730   8.869  1.00 37.42
ATOM     78  CA  PHE    30      13.150  -6.153   7.871  1.00 36.60
ATOM     79  C   PHE    30      14.019  -4.988   7.432  1.00 37.60
ATOM     80  O   PHE    30      15.219  -5.151   7.243  1.00 35.71
ATOM     81  N   GLN    31      13.393  -3.836   7.241  1.00 36.56
ATOM     82  CA  GLN    31      14.078  -2.584   6.945  1.00 36.59
ATOM     83  C   GLN    31      13.486  -1.522   7.829  1.00 36.67
ATOM     84  O   GLN    31      12.313  -1.204   7.710  1.00 35.67
ATOM     85  N   VAL    32      14.290  -1.001   8.746  1.00 39.16
ATOM     86  CA  VAL    32      13.818   0.024   9.657  1.00 41.21
ATOM     87  C   VAL    32      14.108   1.391   9.098  1.00 42.52
ATOM     88  O   VAL    32      13.502   2.375   9.508  1.00 40.07
ATOM     89  N   ASP    33      15.062   1.456   8.169  1.00 44.22
ATOM     90  CA  ASP    33      15.454   2.705   7.518  1.00 43.64
ATOM     91  C   ASP    33      15.887   3.736   8.544  1.00 46.06
ATOM     92  O   ASP    33      15.514   4.917   8.458  1.00 42.95
ATOM     93  N   GLU    34      16.699   3.286   9.500  1.00 47.00
ATOM     94  CA  GLU    34      17.196   4.144  10.572  1.00 49.28
ATOM     95  C   GLU    34      17.810   5.412  10.033  1.00 52.00
ATOM     96  O   GLU    34      17.713   6.480  10.662  1.00 51.33
ATOM     97  N   GLY    35      18.452   5.291   8.868  1.00 37.34
ATOM     98  CA  GLY    35      19.800   4.703   8.632  1.00 37.00
ATOM     99  C   GLY    35      20.909   5.754   8.602  1.00 37.35
ATOM    100  O   GLY    35      22.083   5.487   8.946  1.00 35.92
ATOM    101  N   ILE    36      20.541   6.949   8.140  1.00 36.82
ATOM    102  CA  ILE    36      21.391   8.119   8.207  1.00 36.75
ATOM    103  C   ILE    36      21.013   9.048   7.057  1.00 39.05
ATOM    104  O   ILE    36      19.828   9.242   6.791  1.00 37.71
ATOM    105  N   THR    37      22.005   9.610   6.368  1.00 36.85
ATOM    106  CA  THR    37      21.743  10.674   5.402  1.00 36.54
ATOM    107  C   THR    37      22.397  11.957   5.864  1.00 38.83
ATOM    108  O   THR    37      23.362  11.924   6.632  1.00 38.62
ATOM    109  N   VAL    38      21.817  13.087   5.453  1.00 37.37
ATOM    110  CA  VAL    38      22.301  14.401   5.893  1.00 35.47
ATOM    111  C   VAL    38      22.319  15.308   4.660  1.00 37.43
ATOM    112  O   VAL    38      21.381  15.306   3.829  1.00 36.17
ATOM    113  N   GLN    39      23.403  16.071   4.530  1.00 36.77
ATOM    114  CA  GLN    39      23.552  16.964   3.389  1.00 36.84
ATOM    115  C   GLN    39      24.255  18.237   3.819  1.00 36.36
ATOM    116  O   GLN    39      24.843  18.301   4.878  1.00 36.66
ATOM    117  N   THR    40      24.103  19.262   3.001  1.00 37.28
ATOM    118  CA  THR    40      24.679  20.582   3.260  1.00 39.28
ATOM    119  C   THR    40      25.552  20.832   2.049  1.00 38.52
ATOM    120  O   THR    40      25.082  20.644   0.928  1.00 38.94
ATOM    121  N   ALA    41      26.818  21.198   2.251  1.00 37.38
ATOM    122  CA  ALA    41      27.809  21.287   1.162  1.00 36.21
ATOM    123  C   ALA    41      28.560  22.629   1.196  1.00 36.62
ATOM    124  O   ALA    41      28.983  23.074   2.269  1.00 37.94
ATOM    125  N   ILE    42      28.729  23.244   0.031  1.00 36.65
ATOM    126  CA  ILE    42      29.618  24.394  -0.095  1.00 35.81
ATOM    127  C   ILE    42      30.736  24.050  -1.062  1.00 35.10
ATOM    128  O   ILE    42      30.494  23.592  -2.193  1.00 35.25
ATOM    129  N   THR    43      31.965  24.218  -0.579  1.00 36.22
ATOM    130  CA  THR    43      33.170  24.071  -1.388  1.00 35.49
ATOM    131  C   THR    43      33.655  25.483  -1.676  1.00 35.38
ATOM    132  O   THR    43      33.947  26.241  -0.738  1.00 34.29
ATOM    133  N   GLN    44      33.795  25.841  -2.949  1.00 34.55
ATOM    134  CA  GLN    44      34.464  27.117  -3.281  1.00 35.12
ATOM    135  C   GLN    44      35.975  26.978  -2.999  1.00 35.47
ATOM    136  O   GLN    44      36.499  25.861  -2.903  1.00 33.95
ATOM    137  N   SER    45      36.694  28.102  -2.887  1.00 35.73
ATOM    138  CA  SER    45      38.116  28.004  -2.558  1.00 35.08
ATOM    139  C   SER    45      38.869  27.043  -3.476  1.00 36.39
ATOM    140  O   SER    45      38.629  27.012  -4.679  1.00 33.89
ATOM    141  N   GLY    46      39.721  26.215  -2.878  1.00 36.38
ATOM    142  CA  GLY    46      40.470  25.202  -3.601  1.00 36.59
ATOM    143  C   GLY    46      39.729  23.909  -3.908  1.00 36.89
ATOM    144  O   GLY    46      40.328  22.951  -4.360  1.00 38.39
ATOM    145  N   ILE    47      38.421  23.884  -3.705  1.00 37.32
ATOM    146  CA  ILE    47      37.628  22.694  -4.011  1.00 35.48
ATOM    147  C   ILE    47      37.658  21.692  -2.861  1.00 36.72
ATOM    148  O   ILE    47      37.704  22.069  -1.683  1.00 34.41
ATOM    149  N   LEU    48      37.613  20.408  -3.219  1.00 36.42
ATOM    150  CA  LEU    48      37.652  19.358  -2.225  1.00 36.34
ATOM    151  C   LEU    48      37.203  18.028  -2.766  1.00 36.97
ATOM    152  O   LEU    48      37.244  17.772  -3.968  1.00 35.25
ATOM    153  N   SER    49      36.864  17.132  -1.850  1.00 37.49
ATOM    154  CA  SER    49      36.506  15.792  -2.225  1.00 34.77
ATOM    155  C   SER    49      37.745  15.077  -2.717  1.00 34.60
ATOM    156  O   SER    49      38.876  15.470  -2.390  1.00 34.23
ATOM    157  N   GLN    50      37.527  14.009  -3.478  1.00 32.97
ATOM    158  CA  GLN    50      38.564  12.997  -3.648  1.00 34.52
ATOM    159  C   GLN    50      38.803  12.294  -2.312  1.00 35.73
ATOM    160  O   GLN    50      38.021  12.455  -1.342  1.00 36.76
ATOM    161  N   PHE    51      39.875  11.514  -2.249  1.00 36.22
ATOM    162  CA  PHE    51      40.046  10.567  -1.157  1.00 33.62
ATOM    163  C   PHE    51      38.890   9.554  -1.174  1.00 36.13
ATOM    164  O   PHE    51      38.517   9.035  -2.233  1.00 36.36
ATOM    165  N   PRO    52      38.357   9.242   0.001  1.00 37.19
ATOM    166  CA  PRO    52      38.872  10.452   0.599  1.00 41.89
ATOM    167  C   PRO    52      38.173  11.713   0.095  1.00 41.67
ATOM    168  O   PRO    52      37.190  11.675  -0.704  1.00 42.21
ATOM    169  N   GLU    53      38.692  12.838   0.558  1.00 36.70
ATOM    170  CA  GLU    53      38.138  14.138   0.172  1.00 38.41
ATOM    171  C   GLU    53      38.400  15.175   1.263  1.00 38.33
ATOM    172  O   GLU    53      39.381  15.080   2.004  1.00 36.96
ATOM    173  N   ILE    54      37.475  16.130   1.400  1.00 37.44
ATOM    174  CA  ILE    54      37.627  17.237   2.315  1.00 39.65
ATOM    175  C   ILE    54      37.478  18.511   1.482  1.00 39.62
ATOM    176  O   ILE    54      36.493  18.652   0.764  1.00 40.17
ATOM    177  N   ASP    55      38.451  19.412   1.577  1.00 37.13
ATOM    178  CA  ASP    55      38.381  20.730   0.944  1.00 37.36
ATOM    179  C   ASP    55      38.170  21.788   2.015  1.00 37.43
ATOM    180  O   ASP    55      38.775  21.721   3.091  1.00 35.91
ATOM    181  N   LEU    56      37.310  22.758   1.695  1.00 36.02
ATOM    182  CA  LEU    56      37.029  23.899   2.555  1.00 36.60
ATOM    183  C   LEU    56      37.228  25.151   1.730  1.00 35.14
ATOM    184  O   LEU    56      36.457  25.415   0.814  1.00 34.24
TER
END
