
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   46 (   46),  selected   46 , name T0363TS599_2-D1
# Molecule2: number of CA atoms   46 (  372),  selected   46 , name T0363_D1.pdb
# PARAMETERS: T0363TS599_2-D1.T0363_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      N      11           -
LGA    N      11      Q      12          3.783
LGA    Q      12      I      13          1.079
LGA    I      13      N      14          2.742
LGA    N      14      I      15          1.718
LGA    I      15      E      16          1.184
LGA    E      16      I      17          3.372
LGA    I      17      A      18          0.991
LGA    A      18      Y      19          3.351
LGA    Y      19      A      20          2.563
LGA    A      20      F      21          2.243
LGA    F      21      P      22          2.966
LGA    P      22      E      23          4.059
LGA    E      23      -       -           -
LGA    R      24      -       -           -
LGA    Y      25      R      24          2.962
LGA    Y      26      Y      25          2.107
LGA    L      27      Y      26          3.161
LGA    K      28      L      27          2.597
LGA    S      29      K      28          0.645
LGA    F      30      S      29          3.663
LGA    Q      31      F      30          1.512
LGA    V      32      Q      31          4.691
LGA    D      33      V      32          1.885
LGA    -       -      D      33           -
LGA    E      34      E      34          0.959
LGA    G      35      G      35          1.305
LGA    I      36      I      36          1.444
LGA    T      37      T      37          2.310
LGA    V      38      V      38          2.292
LGA    Q      39      Q      39          2.464
LGA    T      40      T      40          2.402
LGA    A      41      A      41          1.559
LGA    I      42      I      42          1.494
LGA    T      43      T      43          2.172
LGA    Q      44      Q      44          2.226
LGA    S      45      S      45          1.388
LGA    G      46      G      46          0.993
LGA    I      47      I      47          1.759
LGA    L      48      L      48          2.564
LGA    S      49      S      49          2.977
LGA    Q      50      Q      50          3.550
LGA    F      51      F      51          3.949
LGA    -       -      P      52           -
LGA    -       -      E      53           -
LGA    P      52      I      54          2.445
LGA    E      53      D      55          2.123
LGA    I      54      L      56          3.738
LGA    D      55      -       -           -
LGA    L      56      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   46   46    5.0     42    2.56    45.24     64.122     1.580

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.722432 * X  +   0.050935 * Y  +  -0.689564 * Z  +  24.699131
  Y_new =   0.196483 * X  +   0.971293 * Y  +  -0.134103 * Z  +  19.399061
  Z_new =   0.662938 * X  +  -0.232368 * Y  +  -0.711701 * Z  +   5.419691 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.826008    0.315585  [ DEG:  -161.9183     18.0817 ]
  Theta =  -0.724737   -2.416856  [ DEG:   -41.5243   -138.4757 ]
  Phi   =   2.876042   -0.265551  [ DEG:   164.7850    -15.2150 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0363TS599_2-D1                               
REMARK     2: T0363_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0363TS599_2-D1.T0363_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   46   46   5.0   42   2.56   45.24  64.122
REMARK  ---------------------------------------------------------- 
MOLECULE T0363TS599_2-D1
PFRMAT TS                                                                       
TARGET T0363                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM     11  CA  ASN    11      15.603   4.479  10.855  1.00  0.00              
ATOM     12  CA  GLN    12      16.367   6.462   7.661  1.00  0.00              
ATOM     13  CA  ILE    13      18.086   9.746   8.281  1.00  0.00              
ATOM     14  CA  ASN    14      18.853  11.994   5.283  1.00  0.00              
ATOM     15  CA  ILE    15      21.882  14.389   5.517  1.00  0.00              
ATOM     16  CA  GLU    16      22.088  17.152   2.857  1.00  0.00              
ATOM     17  CA  ILE    17      25.610  18.575   2.299  1.00  0.00              
ATOM     18  CA  ALA    18      25.838  21.690   0.096  1.00  0.00              
ATOM     19  CA  TYR    19      29.210  22.413  -1.512  1.00  0.00              
ATOM     20  CA  ALA    20      29.811  25.711  -3.040  1.00  0.00              
ATOM     21  CA  PHE    21      32.288  25.980  -5.858  1.00  0.00              
ATOM     22  CA  PRO    22      33.018  29.394  -7.238  1.00  0.00              
ATOM     23  CA  GLU    23      29.515  29.853  -8.680  1.00  0.00              
ATOM     24  CA  ARG    24      28.396  26.281  -8.982  1.00  0.00              
ATOM     25  CA  TYR    25      26.467  24.607  -6.250  1.00  0.00              
ATOM     26  CA  TYR    26      27.109  21.129  -5.589  1.00  0.00              
ATOM     27  CA  LEU    27      24.579  19.126  -3.708  1.00  0.00              
ATOM     28  CA  LYS    28      25.739  16.070  -1.810  1.00  0.00              
ATOM     29  CA  SER    29      23.159  13.738  -0.283  1.00  0.00              
ATOM     30  CA  PHE    30      24.198  11.490   2.593  1.00  0.00              
ATOM     31  CA  GLN    31      22.008   8.725   3.774  1.00  0.00              
ATOM     32  CA  VAL    32      22.377   7.613   7.342  1.00  0.00              
ATOM     33  CA  ASP    33      21.011   4.330   8.559  1.00  0.00              
ATOM     34  CA  GLU    34      19.664   4.337  12.056  1.00  0.00              
ATOM     35  CA  GLY    35      22.325   3.737  14.543  1.00  0.00              
ATOM     36  CA  ILE    36      25.284   4.858  12.401  1.00  0.00              
ATOM     37  CA  THR    37      27.738   7.352  13.731  1.00  0.00              
ATOM     38  CA  VAL    38      28.357  10.607  11.946  1.00  0.00              
ATOM     39  CA  GLN    39      31.937   9.610  11.391  1.00  0.00              
ATOM     40  CA  THR    40      30.809   6.470   9.494  1.00  0.00              
ATOM     41  CA  ALA    41      28.412   8.377   7.314  1.00  0.00              
ATOM     42  CA  ILE    42      30.970  10.962   6.520  1.00  0.00              
ATOM     43  CA  THR    43      33.665   8.536   5.579  1.00  0.00              
ATOM     44  CA  GLN    44      31.430   6.591   3.302  1.00  0.00              
ATOM     45  CA  SER    45      30.306   9.665   1.433  1.00  0.00              
ATOM     46  CA  GLY    46      33.775  11.002   0.959  1.00  0.00              
ATOM     47  CA  ILE    47      33.059  14.109   2.942  1.00  0.00              
ATOM     48  CA  LEU    48      35.961  14.205   5.455  1.00  0.00              
ATOM     49  CA  SER    49      38.309  13.650   2.583  1.00  0.00              
ATOM     50  CA  GLN    50      36.830  16.556   0.565  1.00  0.00              
ATOM     51  CA  PHE    51      36.435  19.042   3.416  1.00  0.00              
ATOM     52  CA  PRO    52      39.224  18.547   5.926  1.00  0.00              
ATOM     53  CA  GLU    53      38.259  21.459   8.140  1.00  0.00              
ATOM     54  CA  ILE    54      34.760  20.132   8.771  1.00  0.00              
ATOM     55  CA  ASP    55      34.154  18.270  11.953  1.00  0.00              
ATOM     56  CA  LEU    56      32.350  14.965  11.464  1.00  0.00              
TER                                                                             
END
