
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   46 (   46),  selected   46 , name T0363TS599_3-D1
# Molecule2: number of CA atoms   46 (  372),  selected   46 , name T0363_D1.pdb
# PARAMETERS: T0363TS599_3-D1.T0363_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      N      11           -
LGA    -       -      Q      12           -
LGA    N      11      I      13          2.249
LGA    Q      12      N      14          1.720
LGA    I      13      I      15          1.668
LGA    N      14      E      16          1.339
LGA    I      15      I      17          2.024
LGA    E      16      A      18          1.944
LGA    I      17      Y      19          1.882
LGA    A      18      A      20          2.121
LGA    Y      19      F      21          0.581
LGA    A      20      P      22          0.876
LGA    F      21      -       -           -
LGA    P      22      -       -           -
LGA    E      23      -       -           -
LGA    R      24      -       -           -
LGA    Y      25      E      23          2.444
LGA    Y      26      R      24          2.178
LGA    L      27      Y      25          2.681
LGA    K      28      Y      26          1.606
LGA    S      29      L      27          2.622
LGA    F      30      K      28          3.739
LGA    Q      31      S      29          3.314
LGA    V      32      F      30          4.866
LGA    -       -      Q      31           -
LGA    D      33      V      32          2.320
LGA    -       -      D      33           -
LGA    E      34      E      34          2.975
LGA    G      35      G      35          1.873
LGA    I      36      I      36          1.367
LGA    T      37      T      37          2.327
LGA    V      38      V      38          2.475
LGA    Q      39      Q      39          2.964
LGA    T      40      T      40          2.665
LGA    A      41      A      41          1.542
LGA    I      42      I      42          1.723
LGA    T      43      T      43          3.018
LGA    Q      44      Q      44          3.139
LGA    S      45      S      45          2.274
LGA    G      46      G      46          1.769
LGA    I      47      I      47          1.069
LGA    L      48      L      48          0.734
LGA    S      49      S      49          1.182
LGA    Q      50      Q      50          2.378
LGA    F      51      F      51          2.549
LGA    P      52      P      52          2.378
LGA    E      53      E      53          3.590
LGA    I      54      I      54          2.423
LGA    -       -      D      55           -
LGA    D      55      L      56          1.000
LGA    L      56      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   46   46    5.0     41    2.35    58.54     65.947     1.675

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.268184 * X  +   0.893111 * Y  +  -0.361150 * Z  +  28.429003
  Y_new =   0.796667 * X  +   0.005178 * Y  +   0.604396 * Z  +  21.676750
  Z_new =   0.541663 * X  +  -0.449806 * Y  +  -0.710124 * Z  +   5.626440 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.576963    0.564630  [ DEG:  -147.6491     32.3509 ]
  Theta =  -0.572414   -2.569179  [ DEG:   -32.7969   -147.2031 ]
  Phi   =   1.246080   -1.895513  [ DEG:    71.3951   -108.6049 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0363TS599_3-D1                               
REMARK     2: T0363_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0363TS599_3-D1.T0363_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   46   46   5.0   41   2.35   58.54  65.947
REMARK  ---------------------------------------------------------- 
MOLECULE T0363TS599_3-D1
PFRMAT TS                                                                       
TARGET T0363                                                                    
MODEL  3                                                                        
PARENT N/A                                                                      
ATOM     11  CA  ASN    11      16.185   7.385   9.978  1.00  0.00              
ATOM     12  CA  GLN    12      16.923   9.621   7.060  1.00  0.00              
ATOM     13  CA  ILE    13      19.286  12.497   7.579  1.00  0.00              
ATOM     14  CA  ASN    14      20.201  14.578   4.658  1.00  0.00              
ATOM     15  CA  ILE    15      23.187  16.853   4.650  1.00  0.00              
ATOM     16  CA  GLU    16      23.785  19.164   1.749  1.00  0.00              
ATOM     17  CA  ILE    17      27.004  20.775   1.141  1.00  0.00              
ATOM     18  CA  ALA    18      27.519  23.354  -1.545  1.00  0.00              
ATOM     19  CA  TYR    19      30.910  24.469  -2.553  1.00  0.00              
ATOM     20  CA  ALA    20      31.476  27.510  -4.483  1.00  0.00              
ATOM     21  CA  PHE    21      34.826  28.143  -5.999  1.00  0.00              
ATOM     22  CA  PRO    22      35.335  31.146  -8.162  1.00  0.00              
ATOM     23  CA  GLU    23      32.491  30.094 -10.493  1.00  0.00              
ATOM     24  CA  ARG    24      32.517  26.330 -10.298  1.00  0.00              
ATOM     25  CA  TYR    25      29.793  24.852  -8.362  1.00  0.00              
ATOM     26  CA  TYR    26      30.336  21.751  -6.553  1.00  0.00              
ATOM     27  CA  LEU    27      27.418  19.986  -4.972  1.00  0.00              
ATOM     28  CA  LYS    28      27.962  17.521  -2.248  1.00  0.00              
ATOM     29  CA  SER    29      25.141  15.540  -0.925  1.00  0.00              
ATOM     30  CA  PHE    30      25.571  13.557   2.225  1.00  0.00              
ATOM     31  CA  GLN    31      23.120  10.926   3.285  1.00  0.00              
ATOM     32  CA  VAL    32      23.248   9.690   6.815  1.00  0.00              
ATOM     33  CA  ASP    33      21.447   6.537   7.858  1.00  0.00              
ATOM     34  CA  GLU    34      20.021   6.415  11.310  1.00  0.00              
ATOM     35  CA  GLY    35      22.467   5.285  13.894  1.00  0.00              
ATOM     36  CA  ILE    36      25.529   6.179  11.924  1.00  0.00              
ATOM     37  CA  THR    37      28.359   8.275  13.237  1.00  0.00              
ATOM     38  CA  VAL    38      29.208  11.457  11.407  1.00  0.00              
ATOM     39  CA  GLN    39      32.618  10.042  10.477  1.00  0.00              
ATOM     40  CA  THR    40      31.092   7.050   8.784  1.00  0.00              
ATOM     41  CA  ALA    41      28.434   9.125   6.929  1.00  0.00              
ATOM     42  CA  ILE    42      30.926  11.624   5.765  1.00  0.00              
ATOM     43  CA  THR    43      33.289   9.006   4.434  1.00  0.00              
ATOM     44  CA  GLN    44      30.675   7.164   2.533  1.00  0.00              
ATOM     45  CA  SER    45      29.437  10.318   0.889  1.00  0.00              
ATOM     46  CA  GLY    46      32.912  11.504  -0.165  1.00  0.00              
ATOM     47  CA  ILE    47      32.647  14.684   1.864  1.00  0.00              
ATOM     48  CA  LEU    48      36.060  14.297   3.595  1.00  0.00              
ATOM     49  CA  SER    49      37.788  13.673   0.325  1.00  0.00              
ATOM     50  CA  GLN    50      36.269  16.874  -1.100  1.00  0.00              
ATOM     51  CA  PHE    51      36.687  19.129   1.920  1.00  0.00              
ATOM     52  CA  PRO    52      39.866  18.049   3.736  1.00  0.00              
ATOM     53  CA  GLU    53      39.914  20.735   6.401  1.00  0.00              
ATOM     54  CA  ILE    54      36.338  20.200   7.474  1.00  0.00              
ATOM     55  CA  ASP    55      35.715  18.245  10.619  1.00  0.00              
ATOM     56  CA  LEU    56      32.700  15.975  10.020  1.00  0.00              
TER                                                                             
END
