
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   46 (   46),  selected   46 , name T0363TS599_4-D1
# Molecule2: number of CA atoms   46 (  372),  selected   46 , name T0363_D1.pdb
# PARAMETERS: T0363TS599_4-D1.T0363_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    N      11      N      11          3.398
LGA    Q      12      Q      12          2.541
LGA    I      13      I      13          2.462
LGA    N      14      N      14          1.821
LGA    I      15      I      15          2.018
LGA    E      16      E      16          2.209
LGA    I      17      I      17          3.278
LGA    A      18      A      18          3.842
LGA    Y      19      Y      19          4.203
LGA    A      20      A      20          4.273
LGA    F      21      F      21          4.623
LGA    P      22      P      22          4.457
LGA    E      23      E      23          4.099
LGA    R      24      R      24          3.081
LGA    Y      25      Y      25          3.910
LGA    Y      26      Y      26          3.371
LGA    L      27      L      27          2.294
LGA    K      28      K      28          2.083
LGA    S      29      S      29          2.022
LGA    F      30      F      30          3.215
LGA    Q      31      Q      31          3.030
LGA    V      32      V      32          2.372
LGA    D      33      D      33          1.310
LGA    E      34      E      34          1.194
LGA    G      35      G      35          2.732
LGA    I      36      I      36          2.796
LGA    T      37      T      37          3.922
LGA    V      38      V      38          3.966
LGA    Q      39      Q      39          4.156
LGA    T      40      T      40          3.591
LGA    A      41      A      41          3.101
LGA    I      42      I      42          3.574
LGA    T      43      T      43          3.547
LGA    Q      44      Q      44          2.361
LGA    S      45      S      45          2.554
LGA    G      46      G      46          3.933
LGA    I      47      I      47          5.426
LGA    L      48      L      48           #
LGA    S      49      S      49          5.683
LGA    -       -      Q      50           -
LGA    -       -      F      51           -
LGA    Q      50      P      52          4.103
LGA    F      51      E      53           #
LGA    -       -      I      54           -
LGA    P      52      D      55          3.481
LGA    E      53      L      56          2.888
LGA    I      54      -       -           -
LGA    D      55      -       -           -
LGA    L      56      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   46   46    5.0     41    3.39    92.68     62.047     1.174

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.082687 * X  +   0.125201 * Y  +  -0.988680 * Z  +  24.081337
  Y_new =  -0.969426 * X  +  -0.240095 * Y  +   0.050672 * Z  +  17.143465
  Z_new =  -0.231032 * X  +   0.962642 * Y  +   0.141225 * Z  +   4.344543 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.425129   -1.716463  [ DEG:    81.6539    -98.3461 ]
  Theta =   0.233139    2.908454  [ DEG:    13.3579    166.6421 ]
  Phi   =  -1.655885    1.485708  [ DEG:   -94.8752     85.1248 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0363TS599_4-D1                               
REMARK     2: T0363_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0363TS599_4-D1.T0363_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   46   46   5.0   41   3.39   92.68  62.047
REMARK  ---------------------------------------------------------- 
MOLECULE T0363TS599_4-D1
PFRMAT TS                                                                       
TARGET T0363                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM     11  CA  ASN    11      15.440   2.984  11.680  1.00  0.00              
ATOM     12  CA  GLN    12      16.677   4.628   8.507  1.00  0.00              
ATOM     13  CA  ILE    13      17.905   8.131   8.914  1.00  0.00              
ATOM     14  CA  ASN    14      18.331  10.282   5.918  1.00  0.00              
ATOM     15  CA  ILE    15      20.631  13.307   5.942  1.00  0.00              
ATOM     16  CA  GLU    16      20.524  15.874   3.221  1.00  0.00              
ATOM     17  CA  ILE    17      23.340  18.315   2.667  1.00  0.00              
ATOM     18  CA  ALA    18      23.145  21.006   0.149  1.00  0.00              
ATOM     19  CA  TYR    19      26.125  22.892  -1.020  1.00  0.00              
ATOM     20  CA  ALA    20      25.807  26.028  -2.921  1.00  0.00              
ATOM     21  CA  PHE    21      28.901  27.565  -4.533  1.00  0.00              
ATOM     22  CA  PRO    22      28.678  30.300  -6.957  1.00  0.00              
ATOM     23  CA  GLU    23      26.387  28.647  -9.545  1.00  0.00              
ATOM     24  CA  ARG    24      27.213  25.008  -9.025  1.00  0.00              
ATOM     25  CA  TYR    25      24.817  22.951  -7.020  1.00  0.00              
ATOM     26  CA  TYR    26      26.085  20.063  -5.210  1.00  0.00              
ATOM     27  CA  LEU    27      23.743  17.731  -3.493  1.00  0.00              
ATOM     28  CA  LYS    28      25.039  15.354  -0.979  1.00  0.00              
ATOM     29  CA  SER    29      22.762  12.551   0.472  1.00  0.00              
ATOM     30  CA  PHE    30      23.824  10.742   3.501  1.00  0.00              
ATOM     31  CA  GLN    31      22.132   7.656   4.617  1.00  0.00              
ATOM     32  CA  VAL    32      22.384   6.537   8.113  1.00  0.00              
ATOM     33  CA  ASP    33      21.299   3.037   9.182  1.00  0.00              
ATOM     34  CA  GLU    34      19.581   2.796  12.484  1.00  0.00              
ATOM     35  CA  GLY    35      22.101   1.865  14.969  1.00  0.00              
ATOM     36  CA  ILE    36      25.184   3.237  13.144  1.00  0.00              
ATOM     37  CA  THR    37      27.468   5.443  15.222  1.00  0.00              
ATOM     38  CA  VAL    38      28.345   8.822  13.889  1.00  0.00              
ATOM     39  CA  GLN    39      32.060   7.885  13.964  1.00  0.00              
ATOM     40  CA  THR    40      31.384   4.790  11.812  1.00  0.00              
ATOM     41  CA  ALA    41      29.363   6.758   9.303  1.00  0.00              
ATOM     42  CA  ILE    42      32.124   9.364   9.062  1.00  0.00              
ATOM     43  CA  THR    43      34.785   6.717   8.540  1.00  0.00              
ATOM     44  CA  GLN    44      32.873   4.939   5.837  1.00  0.00              
ATOM     45  CA  SER    45      32.098   8.060   3.959  1.00  0.00              
ATOM     46  CA  GLY    46      35.596   9.524   4.009  1.00  0.00              
ATOM     47  CA  ILE    47      34.312  12.394   6.229  1.00  0.00              
ATOM     48  CA  LEU    48      37.428  12.259   8.445  1.00  0.00              
ATOM     49  CA  SER    49      39.498  12.389   5.278  1.00  0.00              
ATOM     50  CA  GLN    50      37.626  15.457   3.970  1.00  0.00              
ATOM     51  CA  PHE    51      37.313  17.461   7.209  1.00  0.00              
ATOM     52  CA  PRO    52      40.107  16.378   9.569  1.00  0.00              
ATOM     53  CA  GLU    53      38.926  18.502  12.404  1.00  0.00              
ATOM     54  CA  ILE    54      35.292  17.557  12.594  1.00  0.00              
ATOM     55  CA  ASP    55      34.465  15.655  15.791  1.00  0.00              
ATOM     56  CA  LEU    56      31.682  13.160  14.942  1.00  0.00              
TER                                                                             
END
