
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   46 (   46),  selected   46 , name T0363TS599_5-D1
# Molecule2: number of CA atoms   46 (  372),  selected   46 , name T0363_D1.pdb
# PARAMETERS: T0363TS599_5-D1.T0363_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      N      11           -
LGA    -       -      Q      12           -
LGA    N      11      I      13          3.484
LGA    Q      12      N      14           #
LGA    I      13      I      15          1.008
LGA    N      14      E      16          2.529
LGA    I      15      I      17          1.597
LGA    E      16      A      18          2.058
LGA    I      17      Y      19          2.353
LGA    A      18      A      20          2.632
LGA    Y      19      F      21          2.505
LGA    A      20      P      22          1.824
LGA    F      21      -       -           -
LGA    P      22      -       -           -
LGA    E      23      -       -           -
LGA    R      24      -       -           -
LGA    Y      25      E      23          2.438
LGA    Y      26      R      24          1.740
LGA    L      27      Y      25          1.833
LGA    K      28      Y      26          2.139
LGA    S      29      L      27          1.128
LGA    F      30      K      28          1.234
LGA    Q      31      S      29          1.081
LGA    V      32      F      30          1.552
LGA    D      33      Q      31          1.566
LGA    E      34      V      32          2.607
LGA    G      35      D      33          1.072
LGA    -       -      E      34           -
LGA    I      36      G      35           #
LGA    T      37      I      36          2.530
LGA    V      38      T      37          4.875
LGA    Q      39      V      38          1.560
LGA    T      40      Q      39          3.913
LGA    A      41      T      40          3.810
LGA    I      42      A      41          4.982
LGA    T      43      I      42          5.097
LGA    Q      44      T      43          1.281
LGA    S      45      Q      44           #
LGA    -       -      S      45           -
LGA    -       -      G      46           -
LGA    -       -      I      47           -
LGA    G      46      L      48          5.758
LGA    -       -      S      49           -
LGA    -       -      Q      50           -
LGA    -       -      F      51           -
LGA    -       -      P      52           -
LGA    -       -      E      53           -
LGA    -       -      I      54           -
LGA    I      47      D      55          3.918
LGA    L      48      L      56          2.577
LGA    S      49      -       -           -
LGA    Q      50      -       -           -
LGA    F      51      -       -           -
LGA    P      52      -       -           -
LGA    E      53      -       -           -
LGA    I      54      -       -           -
LGA    D      55      -       -           -
LGA    L      56      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   46   46    5.0     31    2.85    12.90     46.629     1.050

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.930947 * X  +  -0.136801 * Y  +   0.338560 * Z  +  29.789257
  Y_new =  -0.152115 * X  +  -0.697601 * Y  +  -0.700152 * Z  +  19.927505
  Z_new =   0.331962 * X  +  -0.703305 * Y  +   0.628621 * Z  +   3.521031 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.841412    2.300181  [ DEG:   -48.2093    131.7906 ]
  Theta =  -0.338382   -2.803210  [ DEG:   -19.3879   -160.6121 ]
  Phi   =  -2.979626    0.161967  [ DEG:  -170.7200      9.2800 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0363TS599_5-D1                               
REMARK     2: T0363_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0363TS599_5-D1.T0363_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   46   46   5.0   31   2.85   12.90  46.629
REMARK  ---------------------------------------------------------- 
MOLECULE T0363TS599_5-D1
PFRMAT TS                                                                       
TARGET T0363                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM     11  CA  ASN    11      16.899   8.637  10.618  1.00  0.00              
ATOM     12  CA  GLN    12      20.226  10.435  10.604  1.00  0.00              
ATOM     13  CA  ILE    13      20.150  12.166   7.174  1.00  0.00              
ATOM     14  CA  ASN    14      23.462  13.549   5.802  1.00  0.00              
ATOM     15  CA  ILE    15      23.626  16.783   3.889  1.00  0.00              
ATOM     16  CA  GLU    16      26.749  17.984   2.168  1.00  0.00              
ATOM     17  CA  ILE    17      26.766  21.282   0.516  1.00  0.00              
ATOM     18  CA  ALA    18      29.609  22.490  -1.519  1.00  0.00              
ATOM     19  CA  TYR    19      29.753  26.116  -2.505  1.00  0.00              
ATOM     20  CA  ALA    20      32.313  27.400  -4.932  1.00  0.00              
ATOM     21  CA  PHE    21      33.127  31.050  -5.054  1.00  0.00              
ATOM     22  CA  PRO    22      34.164  32.662  -8.278  1.00  0.00              
ATOM     23  CA  GLU    23      30.597  33.443  -9.451  1.00  0.00              
ATOM     24  CA  ARG    24      29.287  29.921  -9.886  1.00  0.00              
ATOM     25  CA  TYR    25      27.479  28.181  -7.117  1.00  0.00              
ATOM     26  CA  TYR    26      27.718  24.523  -6.912  1.00  0.00              
ATOM     27  CA  LEU    27      25.494  22.618  -4.622  1.00  0.00              
ATOM     28  CA  LYS    28      25.934  18.962  -3.843  1.00  0.00              
ATOM     29  CA  SER    29      23.390  17.072  -1.786  1.00  0.00              
ATOM     30  CA  PHE    30      24.363  13.876  -0.036  1.00  0.00              
ATOM     31  CA  GLN    31      21.866  11.478   1.355  1.00  0.00              
ATOM     32  CA  VAL    32      23.016   8.687   3.417  1.00  0.00              
ATOM     33  CA  ASP    33      21.767   5.282   3.800  1.00  0.00              
ATOM     34  CA  GLU    34      19.728   3.591   6.213  1.00  0.00              
ATOM     35  CA  GLY    35      21.818   2.828   9.204  1.00  0.00              
ATOM     36  CA  ILE    36      24.523   5.408   8.835  1.00  0.00              
ATOM     37  CA  THR    37      24.813   7.982  11.653  1.00  0.00              
ATOM     38  CA  VAL    38      25.662  11.495  10.410  1.00  0.00              
ATOM     39  CA  GLN    39      28.494  11.364  12.973  1.00  0.00              
ATOM     40  CA  THR    40      29.880   8.240  11.222  1.00  0.00              
ATOM     41  CA  ALA    41      29.765   9.932   7.816  1.00  0.00              
ATOM     42  CA  ILE    42      31.491  13.032   9.252  1.00  0.00              
ATOM     43  CA  THR    43      34.180  10.806  10.769  1.00  0.00              
ATOM     44  CA  GLN    44      34.678   9.073   7.467  1.00  0.00              
ATOM     45  CA  SER    45      35.318  12.456   5.764  1.00  0.00              
ATOM     46  CA  GLY    46      37.830  13.505   8.418  1.00  0.00              
ATOM     47  CA  ILE    47      36.166  16.726   9.347  1.00  0.00              
ATOM     48  CA  LEU    48      35.845  16.129  13.051  1.00  0.00              
ATOM     49  CA  SER    49      39.452  15.114  13.369  1.00  0.00              
ATOM     50  CA  GLN    50      40.735  18.232  11.552  1.00  0.00              
ATOM     51  CA  PHE    51      38.450  20.770  13.112  1.00  0.00              
ATOM     52  CA  PRO    52      37.721  19.719  16.727  1.00  0.00              
ATOM     53  CA  GLU    53      35.669  22.716  17.737  1.00  0.00              
ATOM     54  CA  ILE    54      33.358  22.667  14.766  1.00  0.00              
ATOM     55  CA  ASP    55      30.098  20.756  14.914  1.00  0.00              
ATOM     56  CA  LEU    56      29.621  19.512  11.335  1.00  0.00              
TER                                                                             
END
