
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   36 (  177),  selected   36 , name T0368TS239_5_2
# Molecule2: number of CA atoms  157 ( 1171),  selected  157 , name T0368.pdb
# PARAMETERS: T0368TS239_5_2.T0368.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      M       1           -
LGA    -       -      K       2           -
LGA    -       -      P       3           -
LGA    -       -      L       4           -
LGA    -       -      K       5           -
LGA    P     139      E       6          1.704
LGA    G     140      V       7          1.677
LGA    K     141      V       8          1.189
LGA    E     142      G       9          0.573
LGA    R     143      A      10          0.682
LGA    M     144      Y      11          0.550
LGA    M     145      L      12          0.331
LGA    E     146      A      13          0.662
LGA    V     147      L      14          0.535
LGA    A     148      S      15          0.681
LGA    I     149      D      16          0.336
LGA    D     150      A      17          0.335
LGA    R     151      Q      18          0.560
LGA    I     152      R      19          0.511
LGA    A     153      Q      20          0.480
LGA    Q     154      L      21          0.456
LGA    L     155      V      22          0.443
LGA    G     156      A      23          0.601
LGA    A     157      G      24          0.440
LGA    S     158      E      25          0.433
LGA    N     159      Y      26          0.336
LGA    Q     160      D      27          0.854
LGA    Q     161      E      28          0.301
LGA    K     162      A      29          0.264
LGA    K     163      A      30          0.635
LGA    P     164      A      31          0.348
LGA    G     165      N      32          0.398
LGA    Y     166      C      33          0.599
LGA    K     167      R      34          0.474
LGA    A     168      R      35          0.396
LGA    W     169      A      36          0.434
LGA    W     170      M      37          0.322
LGA    E     171      E      38          0.176
LGA    F     172      I      39          0.277
LGA    W     173      S      40          1.090
LGA    S     174      H      41          1.332
LGA    -       -      T      42           -
LGA    -       -      M      43           -
LGA    -       -      P      44           -
LGA    -       -      P      45           -
LGA    -       -      E      46           -
LGA    -       -      E      47           -
LGA    -       -      A      48           -
LGA    -       -      F      49           -
LGA    -       -      D      50           -
LGA    -       -      H      51           -
LGA    -       -      A      52           -
LGA    -       -      G      53           -
LGA    -       -      F      54           -
LGA    -       -      D      55           -
LGA    -       -      A      56           -
LGA    -       -      F      57           -
LGA    -       -      C      58           -
LGA    -       -      H      59           -
LGA    -       -      A      60           -
LGA    -       -      G      61           -
LGA    -       -      L      62           -
LGA    -       -      A      63           -
LGA    -       -      E      64           -
LGA    -       -      A      65           -
LGA    -       -      L      66           -
LGA    -       -      A      67           -
LGA    -       -      G      68           -
LGA    -       -      L      69           -
LGA    -       -      R      70           -
LGA    -       -      S      71           -
LGA    -       -      F      72           -
LGA    -       -      D      73           -
LGA    -       -      E      74           -
LGA    -       -      A      75           -
LGA    -       -      L      76           -
LGA    -       -      H      77           -
LGA    -       -      S      78           -
LGA    -       -      A      79           -
LGA    -       -      D      80           -
LGA    -       -      K      81           -
LGA    -       -      A      82           -
LGA    -       -      L      83           -
LGA    -       -      H      84           -
LGA    -       -      Y      85           -
LGA    -       -      F      86           -
LGA    -       -      N      87           -
LGA    -       -      R      88           -
LGA    -       -      R      89           -
LGA    -       -      G      90           -
LGA    -       -      E      91           -
LGA    -       -      L      92           -
LGA    -       -      N      93           -
LGA    -       -      Q      94           -
LGA    -       -      D      95           -
LGA    -       -      E      96           -
LGA    -       -      G      97           -
LGA    -       -      K      98           -
LGA    -       -      L      99           -
LGA    -       -      W     100           -
LGA    -       -      I     101           -
LGA    -       -      S     102           -
LGA    -       -      A     103           -
LGA    -       -      V     104           -
LGA    -       -      Y     105           -
LGA    -       -      S     106           -
LGA    -       -      R     107           -
LGA    -       -      A     108           -
LGA    -       -      L     109           -
LGA    -       -      A     110           -
LGA    -       -      L     111           -
LGA    -       -      D     112           -
LGA    -       -      G     113           -
LGA    -       -      L     114           -
LGA    -       -      G     115           -
LGA    -       -      R     116           -
LGA    -       -      G     117           -
LGA    -       -      A     118           -
LGA    -       -      E     119           -
LGA    -       -      A     120           -
LGA    -       -      M     121           -
LGA    -       -      P     122           -
LGA    -       -      E     123           -
LGA    -       -      F     124           -
LGA    -       -      K     125           -
LGA    -       -      K     126           -
LGA    -       -      V     127           -
LGA    -       -      V     128           -
LGA    -       -      E     129           -
LGA    -       -      M     130           -
LGA    -       -      I     131           -
LGA    -       -      E     132           -
LGA    -       -      E     133           -
LGA    -       -      R     134           -
LGA    -       -      K     135           -
LGA    -       -      G     136           -
LGA    -       -      E     137           -
LGA    -       -      T     138           -
LGA    -       -      P     139           -
LGA    -       -      G     140           -
LGA    -       -      K     141           -
LGA    -       -      E     142           -
LGA    -       -      R     143           -
LGA    -       -      M     144           -
LGA    -       -      M     145           -
LGA    -       -      E     146           -
LGA    -       -      V     147           -
LGA    -       -      A     148           -
LGA    -       -      I     149           -
LGA    -       -      D     150           -
LGA    -       -      R     151           -
LGA    -       -      I     152           -
LGA    -       -      A     153           -
LGA    -       -      Q     154           -
LGA    -       -      L     155           -
LGA    -       -      G     156           -
LGA    -       -      A     157           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   36  157    5.0     36    0.70     2.78     22.681     4.517

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.253434 * X  +  -0.919426 * Y  +  -0.300711 * Z  +  98.153511
  Y_new =  -0.817342 * X  +   0.037251 * Y  +   0.574947 * Z  +  52.364910
  Z_new =  -0.517420 * X  +   0.391495 * Y  +  -0.760926 * Z  +   1.482540 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.666414   -0.475178  [ DEG:   152.7743    -27.2257 ]
  Theta =   0.543833    2.597760  [ DEG:    31.1593    148.8407 ]
  Phi   =  -1.871467    1.270126  [ DEG:  -107.2272     72.7728 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0368TS239_5_2                                
REMARK     2: T0368.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0368TS239_5_2.T0368.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   36  157   5.0   36   0.70    2.78  22.681
REMARK  ---------------------------------------------------------- 
MOLECULE T0368TS239_5_2
REMARK PARENT number 2
PFRMAT TS
TARGET T0368
PARENT 1hz4_A
ATOM    621  N   PRO   139      53.898  50.136  51.954  1.00  9.99
ATOM    622  CA  PRO   139      53.912  50.673  53.313  1.00  9.99
ATOM    623  C   PRO   139      55.267  51.177  53.842  1.00  9.99
ATOM    624  O   PRO   139      56.305  50.546  53.647  1.00  9.99
ATOM    625  CB  PRO   139      53.299  49.633  54.249  1.00  9.99
ATOM    626  N   GLY   140      55.261  52.319  54.547  1.00  9.99
ATOM    627  CA  GLY   140      56.466  52.950  55.104  1.00  9.99
ATOM    628  C   GLY   140      57.470  52.092  55.865  1.00  9.99
ATOM    629  O   GLY   140      58.680  52.281  55.745  1.00  9.99
ATOM    630  N   LYS   141      56.977  51.151  56.659  1.00  9.99
ATOM    631  CA  LYS   141      57.851  50.306  57.444  1.00  9.99
ATOM    632  C   LYS   141      58.759  49.448  56.572  1.00  9.99
ATOM    633  O   LYS   141      59.778  48.920  57.026  1.00  9.99
ATOM    634  CB  LYS   141      57.005  49.422  58.339  1.00  9.99
ATOM    635  N   GLU   142      58.371  49.299  55.319  1.00  9.99
ATOM    636  CA  GLU   142      59.150  48.519  54.372  1.00  9.99
ATOM    637  C   GLU   142      60.530  49.188  54.237  1.00  9.99
ATOM    638  O   GLU   142      61.544  48.500  54.058  1.00  9.99
ATOM    639  CB  GLU   142      58.400  48.505  53.037  1.00  9.99
ATOM    640  N   ARG   143      60.589  50.518  54.338  1.00  9.99
ATOM    641  CA  ARG   143      61.883  51.200  54.240  1.00  9.99
ATOM    642  C   ARG   143      62.808  50.816  55.387  1.00  9.99
ATOM    643  O   ARG   143      64.006  50.633  55.191  1.00  9.99
ATOM    644  CB  ARG   143      61.698  52.722  54.230  1.00  9.99
ATOM    645  N   MET   144      62.267  50.691  56.595  1.00  9.99
ATOM    646  CA  MET   144      63.105  50.341  57.735  1.00  9.99
ATOM    647  C   MET   144      63.715  48.951  57.482  1.00  9.99
ATOM    648  O   MET   144      64.909  48.722  57.704  1.00  9.99
ATOM    649  CB  MET   144      62.248  50.358  59.009  1.00  9.99
ATOM    650  N   MET   145      62.898  48.024  56.995  1.00  9.99
ATOM    651  CA  MET   145      63.383  46.679  56.719  1.00  9.99
ATOM    652  C   MET   145      64.474  46.673  55.650  1.00  9.99
ATOM    653  O   MET   145      65.524  46.043  55.840  1.00  9.99
ATOM    654  CB  MET   145      62.227  45.775  56.277  1.00  9.99
ATOM    655  N   GLU   146      64.261  47.360  54.527  1.00  9.99
ATOM    656  CA  GLU   146      65.305  47.342  53.507  1.00  9.99
ATOM    657  C   GLU   146      66.548  48.090  53.979  1.00  9.99
ATOM    658  O   GLU   146      67.657  47.792  53.534  1.00  9.99
ATOM    659  CB  GLU   146      64.824  47.883  52.122  1.00  9.99
ATOM    660  N   VAL   147      66.382  49.021  54.910  1.00  9.99
ATOM    661  CA  VAL   147      67.532  49.745  55.430  1.00  9.99
ATOM    662  C   VAL   147      68.384  48.810  56.297  1.00  9.99
ATOM    663  O   VAL   147      69.609  48.785  56.164  1.00  9.99
ATOM    664  CB  VAL   147      67.085  50.953  56.247  1.00  9.99
ATOM    665  N   ALA   148      67.757  48.034  57.184  1.00  9.99
ATOM    666  CA  ALA   148      68.566  47.132  58.003  1.00  9.99
ATOM    667  C   ALA   148      69.091  45.964  57.163  1.00  9.99
ATOM    668  O   ALA   148      70.144  45.399  57.474  1.00  9.99
ATOM    669  CB  ALA   148      67.832  46.645  59.290  1.00  9.99
ATOM    670  N   ILE   149      68.392  45.612  56.087  1.00  9.99
ATOM    671  CA  ILE   149      68.895  44.571  55.196  1.00  9.99
ATOM    672  C   ILE   149      70.144  45.154  54.524  1.00  9.99
ATOM    673  O   ILE   149      71.158  44.463  54.372  1.00  9.99
ATOM    674  CB  ILE   149      67.816  44.184  54.159  1.00  9.99
ATOM    675  N   ASP   150      70.089  46.429  54.142  1.00  9.99
ATOM    676  CA  ASP   150      71.257  47.074  53.525  1.00  9.99
ATOM    677  C   ASP   150      72.438  47.104  54.496  1.00  9.99
ATOM    678  O   ASP   150      73.583  46.912  54.094  1.00  9.99
ATOM    679  CB  ASP   150      70.911  48.504  53.086  1.00  9.99
ATOM    680  N   ARG   151      72.167  47.355  55.768  1.00  9.99
ATOM    681  CA  ARG   151      73.238  47.403  56.762  1.00  9.99
ATOM    682  C   ARG   151      73.960  46.071  56.838  1.00  9.99
ATOM    683  O   ARG   151      75.193  46.007  56.909  1.00  9.99
ATOM    684  CB  ARG   151      72.662  47.755  58.136  1.00  9.99
ATOM    685  N   ILE   152      73.183  45.000  56.827  1.00  9.99
ATOM    686  CA  ILE   152      73.733  43.663  56.905  1.00  9.99
ATOM    687  C   ILE   152      74.527  43.347  55.629  1.00  9.99
ATOM    688  O   ILE   152      75.663  42.864  55.703  1.00  9.99
ATOM    689  CB  ILE   152      72.571  42.693  57.145  1.00  9.99
ATOM    690  N   ALA   153      73.965  43.658  54.465  1.00  9.99
ATOM    691  CA  ALA   153      74.659  43.416  53.201  1.00  9.99
ATOM    692  C   ALA   153      75.956  44.224  53.163  1.00  9.99
ATOM    693  O   ALA   153      76.978  43.769  52.642  1.00  9.99
ATOM    694  CB  ALA   153      73.764  43.803  52.019  1.00  9.99
ATOM    695  N   GLN   154      75.919  45.432  53.710  1.00  9.99
ATOM    696  CA  GLN   154      77.110  46.267  53.737  1.00  9.99
ATOM    697  C   GLN   154      78.186  45.592  54.596  1.00  9.99
ATOM    698  O   GLN   154      79.357  45.522  54.188  1.00  9.99
ATOM    699  CB  GLN   154      76.777  47.648  54.314  1.00  9.99
ATOM    700  N   LEU   155      77.809  45.093  55.773  1.00  9.99
ATOM    701  CA  LEU   155      78.813  44.431  56.622  1.00  9.99
ATOM    702  C   LEU   155      79.512  43.327  55.836  1.00  9.99
ATOM    703  O   LEU   155      80.737  43.172  55.912  1.00  9.99
ATOM    704  CB  LEU   155      78.157  43.842  57.880  1.00  9.99
ATOM    705  N   GLY   156      78.730  42.571  55.078  1.00  9.99
ATOM    706  CA  GLY   156      79.228  41.451  54.281  1.00  9.99
ATOM    707  C   GLY   156      79.902  41.852  52.975  1.00  9.99
ATOM    708  O   GLY   156      80.307  40.988  52.191  1.00  9.99
ATOM    709  N   ALA   157      79.995  43.158  52.735  1.00  9.99
ATOM    710  CA  ALA   157      80.622  43.704  51.541  1.00  9.99
ATOM    711  C   ALA   157      79.888  43.396  50.236  1.00  9.99
ATOM    712  O   ALA   157      80.497  43.313  49.173  1.00  9.99
ATOM    713  CB  ALA   157      82.087  43.246  51.461  1.00  9.99
ATOM    714  N   SER   158      78.573  43.226  50.323  1.00  9.99
ATOM    715  CA  SER   158      77.755  42.994  49.133  1.00  9.99
ATOM    716  C   SER   158      77.207  44.390  48.879  1.00  9.99
ATOM    717  O   SER   158      76.031  44.688  49.148  1.00  9.99
ATOM    718  CB  SER   158      76.652  41.997  49.448  1.00  9.99
ATOM    719  N   ASN   159      78.086  45.249  48.376  1.00  9.99
ATOM    720  CA  ASN   159      77.769  46.649  48.164  1.00  9.99
ATOM    721  C   ASN   159      76.717  46.961  47.117  1.00  9.99
ATOM    722  O   ASN   159      75.882  47.840  47.335  1.00  9.99
ATOM    723  CB  ASN   159      79.058  47.439  47.893  1.00  9.99
ATOM    724  N   GLN   160      76.740  46.275  45.982  1.00  9.99
ATOM    725  CA  GLN   160      75.719  46.553  44.977  1.00  9.99
ATOM    726  C   GLN   160      74.347  46.234  45.554  1.00  9.99
ATOM    727  O   GLN   160      73.399  47.002  45.377  1.00  9.99
ATOM    728  CB  GLN   160      75.943  45.732  43.706  1.00  9.99
ATOM    729  N   GLN   161      74.244  45.109  46.248  1.00  9.99
ATOM    730  CA  GLN   161      72.973  44.723  46.855  1.00  9.99
ATOM    731  C   GLN   161      72.580  45.712  47.953  1.00  9.99
ATOM    732  O   GLN   161      71.421  46.108  48.052  1.00  9.99
ATOM    733  CB  GLN   161      73.053  43.311  47.438  1.00  9.99
ATOM    734  N   LYS   162      73.539  46.122  48.771  1.00  9.99
ATOM    735  CA  LYS   162      73.228  47.070  49.839  1.00  9.99
ATOM    736  C   LYS   162      72.694  48.385  49.263  1.00  9.99
ATOM    737  O   LYS   162      71.725  48.948  49.771  1.00  9.99
ATOM    738  CB  LYS   162      74.470  47.325  50.687  1.00  9.99
ATOM    739  N   LYS   163      73.328  48.866  48.203  1.00  9.99
ATOM    740  CA  LYS   163      72.913  50.104  47.571  1.00  9.99
ATOM    741  C   LYS   163      71.509  49.963  47.007  1.00  9.99
ATOM    742  O   LYS   163      70.673  50.858  47.172  1.00  9.99
ATOM    743  CB  LYS   163      73.875  50.478  46.442  1.00  9.99
ATOM    744  N   PRO   164      71.240  48.846  46.334  1.00  9.99
ATOM    745  CA  PRO   164      69.913  48.638  45.764  1.00  9.99
ATOM    746  C   PRO   164      68.872  48.600  46.874  1.00  9.99
ATOM    747  O   PRO   164      67.762  49.103  46.708  1.00  9.99
ATOM    748  CB  PRO   164      69.875  47.341  44.962  1.00  9.99
ATOM    749  N   GLY   165      69.231  48.006  48.007  1.00  9.99
ATOM    750  CA  GLY   165      68.304  47.928  49.124  1.00  9.99
ATOM    751  C   GLY   165      68.020  49.339  49.638  1.00  9.99
ATOM    752  O   GLY   165      66.865  49.697  49.880  1.00  9.99
ATOM    753  N   TYR   166      69.061  50.150  49.796  1.00  9.99
ATOM    754  CA  TYR   166      68.864  51.517  50.263  1.00  9.99
ATOM    755  C   TYR   166      68.018  52.310  49.265  1.00  9.99
ATOM    756  O   TYR   166      67.149  53.081  49.664  1.00  9.99
ATOM    757  CB  TYR   166      70.208  52.210  50.471  1.00  9.99
ATOM    758  N   LYS   167      68.254  52.131  47.968  1.00  9.99
ATOM    759  CA  LYS   167      67.470  52.878  46.986  1.00  9.99
ATOM    760  C   LYS   167      66.006  52.440  46.995  1.00  9.99
ATOM    761  O   LYS   167      65.110  53.255  46.751  1.00  9.99
ATOM    762  CB  LYS   167      68.073  52.744  45.577  1.00  9.99
ATOM    763  N   ALA   168      65.742  51.171  47.289  1.00  9.99
ATOM    764  CA  ALA   168      64.354  50.726  47.344  1.00  9.99
ATOM    765  C   ALA   168      63.674  51.414  48.538  1.00  9.99
ATOM    766  O   ALA   168      62.484  51.718  48.482  1.00  9.99
ATOM    767  CB  ALA   168      64.254  49.196  47.448  1.00  9.99
ATOM    768  N   TRP   169      64.432  51.677  49.604  1.00  9.99
ATOM    769  CA  TRP   169      63.889  52.369  50.764  1.00  9.99
ATOM    770  C   TRP   169      63.511  53.799  50.401  1.00  9.99
ATOM    771  O   TRP   169      62.456  54.307  50.815  1.00  9.99
ATOM    772  CB  TRP   169      64.918  52.333  51.908  1.00  9.99
ATOM    773  N   TRP   170      64.385  54.460  49.645  1.00  9.99
ATOM    774  CA  TRP   170      64.133  55.816  49.191  1.00  9.99
ATOM    775  C   TRP   170      62.873  55.818  48.318  1.00  9.99
ATOM    776  O   TRP   170      62.035  56.711  48.437  1.00  9.99
ATOM    777  CB  TRP   170      65.368  56.349  48.412  1.00  9.99
ATOM    778  N   GLU   171      62.710  54.802  47.476  1.00  9.99
ATOM    779  CA  GLU   171      61.530  54.738  46.619  1.00  9.99
ATOM    780  C   GLU   171      60.262  54.541  47.455  1.00  9.99
ATOM    781  O   GLU   171      59.241  55.181  47.201  1.00  9.99
ATOM    782  CB  GLU   171      61.677  53.609  45.595  1.00  9.99
ATOM    783  N   PHE   172      60.327  53.666  48.456  1.00  9.99
ATOM    784  CA  PHE   172      59.171  53.434  49.329  1.00  9.99
ATOM    785  C   PHE   172      58.680  54.748  49.942  1.00  9.99
ATOM    786  O   PHE   172      57.475  54.958  50.096  1.00  9.99
ATOM    787  CB  PHE   172      59.528  52.454  50.481  1.00  9.99
ATOM    788  N   TRP   173      59.607  55.645  50.264  1.00  9.99
ATOM    789  CA  TRP   173      59.251  56.921  50.888  1.00  9.99
ATOM    790  C   TRP   173      59.162  58.091  49.909  1.00  9.99
ATOM    791  O   TRP   173      59.162  59.251  50.323  1.00  9.99
ATOM    792  CB  TRP   173      60.268  57.252  51.993  1.00  9.99
ATOM    793  N   SER   174      59.043  57.798  48.615  1.00  9.99
ATOM    794  CA  SER   174      59.017  58.859  47.610  1.00  9.99
ATOM    795  C   SER   174      57.913  59.896  47.756  1.00  9.99
ATOM    796  O   SER   174      58.090  61.040  47.333  1.00  9.99
ATOM    797  CB  SER   174      58.968  58.264  46.198  1.00  9.99
TER
END
