
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   21 (   21),  selected   21 , name T0372TS464_5_2-D2
# Molecule2: number of CA atoms  172 ( 1400),  selected  172 , name T0372_D2.pdb
# PARAMETERS: T0372TS464_5_2-D2.T0372_D2.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      R     118           -
LGA    -       -      A     119           -
LGA    -       -      Y     120           -
LGA    -       -      A     121           -
LGA    -       -      D     122           -
LGA    -       -      Y     123           -
LGA    -       -      I     124           -
LGA    -       -      Y     125           -
LGA    -       -      L     126           -
LGA    -       -      R     127           -
LGA    -       -      S     128           -
LGA    -       -      D     129           -
LGA    -       -      L     130           -
LGA    -       -      A     131           -
LGA    -       -      T     132           -
LGA    -       -      L     133           -
LGA    -       -      K     134           -
LGA    -       -      G     135           -
LGA    -       -      K     136           -
LGA    -       -      K     137           -
LGA    -       -      F     138           -
LGA    -       -      Q     139           -
LGA    -       -      A     140           -
LGA    -       -      K     141           -
LGA    -       -      R     142           -
LGA    -       -      N     143           -
LGA    -       -      H     144           -
LGA    -       -      I     145           -
LGA    -       -      N     146           -
LGA    -       -      R     147           -
LGA    -       -      F     148           -
LGA    -       -      R     149           -
LGA    -       -      N     150           -
LGA    -       -      T     151           -
LGA    -       -      Y     152           -
LGA    -       -      P     153           -
LGA    -       -      D     154           -
LGA    -       -      Y     155           -
LGA    -       -      E     156           -
LGA    -       -      Y     157           -
LGA    -       -      T     158           -
LGA    -       -      P     159           -
LGA    -       -      I     160           -
LGA    -       -      T     161           -
LGA    -       -      P     162           -
LGA    -       -      D     163           -
LGA    -       -      R     164           -
LGA    -       -      I     165           -
LGA    -       -      Q     166           -
LGA    -       -      E     167           -
LGA    S     128      C     168           #
LGA    -       -      L     169           -
LGA    -       -      D     170           -
LGA    -       -      L     171           -
LGA    -       -      E     172           -
LGA    -       -      A     173           -
LGA    -       -      E     174           -
LGA    -       -      W     175           -
LGA    -       -      C     176           -
LGA    -       -      K     177           -
LGA    -       -      V     178           -
LGA    -       -      N     179           -
LGA    -       -      N     180           -
LGA    -       -      C     181           -
LGA    -       -      D     182           -
LGA    -       -      Q     183           -
LGA    -       -      Q     184           -
LGA    -       -      E     185           -
LGA    -       -      G     186           -
LGA    -       -      T     187           -
LGA    -       -      G     188           -
LGA    -       -      N     189           -
LGA    -       -      E     190           -
LGA    -       -      R     191           -
LGA    -       -      R     192           -
LGA    -       -      A     193           -
LGA    -       -      L     194           -
LGA    -       -      I     195           -
LGA    -       -      Y     196           -
LGA    -       -      A     197           -
LGA    -       -      L     198           -
LGA    -       -      H     199           -
LGA    -       -      N     200           -
LGA    -       -      F     201           -
LGA    -       -      E     202           -
LGA    -       -      A     203           -
LGA    -       -      L     204           -
LGA    -       -      G     205           -
LGA    -       -      L     206           -
LGA    -       -      T     207           -
LGA    -       -      G     208           -
LGA    -       -      G     209           -
LGA    -       -      I     210           -
LGA    -       -      L     211           -
LGA    -       -      H     212           -
LGA    -       -      V     213           -
LGA    -       -      N     214           -
LGA    -       -      G     215           -
LGA    -       -      K     216           -
LGA    -       -      I     217           -
LGA    -       -      V     218           -
LGA    -       -      A     219           -
LGA    -       -      F     220           -
LGA    D     129      T     221          2.129
LGA    L     130      F     222          3.726
LGA    A     131      G     223           -
LGA    T     132      M     224           -
LGA    -       -      P     225           -
LGA    -       -      I     226           -
LGA    -       -      N     227           -
LGA    -       -      H     228           -
LGA    -       -      E     229           -
LGA    -       -      T     230           -
LGA    -       -      F     231           -
LGA    -       -      G     232           -
LGA    -       -      V     233           -
LGA    -       -      H     234           -
LGA    -       -      V     235           -
LGA    -       -      E     236           -
LGA    -       -      K     237           -
LGA    -       -      A     238           -
LGA    -       -      D     239           -
LGA    -       -      T     240           -
LGA    -       -      S     241           -
LGA    -       -      I     242           -
LGA    -       -      D     243           -
LGA    -       -      G     244           -
LGA    A     193      A     245          1.626
LGA    L     194      Y     246          1.682
LGA    I     195      A     247          0.970
LGA    Y     196      M     248          0.681
LGA    A     197      I     249          1.530
LGA    L     198      N     250          1.499
LGA    H     199      Y     251          1.103
LGA    N     200      E     252          1.640
LGA    F     201      F     253          1.876
LGA    E     202      A     254          1.298
LGA    A     203      N     255          1.150
LGA    L     204      R     256          0.775
LGA    G     205      I     257          1.463
LGA    L     206      P     258          5.896
LGA    -       -      E     259           -
LGA    -       -      Q     260           -
LGA    -       -      Y     261           -
LGA    -       -      I     262           -
LGA    T     207      Y     263          4.635
LGA    G     208      I     264          3.655
LGA    -       -      N     265           -
LGA    -       -      R     266           -
LGA    -       -      E     267           -
LGA    -       -      E     268           -
LGA    -       -      D     269           -
LGA    -       -      L     270           -
LGA    -       -      G     271           -
LGA    -       -      I     272           -
LGA    -       -      E     273           -
LGA    -       -      G     274           -
LGA    -       -      L     275           -
LGA    -       -      R     276           -
LGA    -       -      K     277           -
LGA    -       -      A     278           -
LGA    -       -      K     279           -
LGA    -       -      L     280           -
LGA    -       -      S     281           -
LGA    -       -      Y     282           -
LGA    -       -      Q     283           -
LGA    -       -      P     284           -
LGA    -       -      V     285           -
LGA    -       -      T     286           -
LGA    -       -      I     287           -
LGA    -       -      L     288           -
LGA    -       -      E     289           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   21  172    5.0     18    2.50    11.11      8.981     0.692

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.674204 * X  +   0.676292 * Y  +   0.296780 * Z  +  45.282650
  Y_new =   0.699285 * X  +   0.713829 * Y  +  -0.038063 * Z  + -81.290771
  Z_new =  -0.237591 * X  +   0.181872 * Y  +  -0.954187 * Z  +  80.277939 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.953248   -0.188345  [ DEG:   169.2086    -10.7913 ]
  Theta =   0.239886    2.901707  [ DEG:    13.7444    166.2556 ]
  Phi   =   2.337936   -0.803657  [ DEG:   133.9539    -46.0461 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0372TS464_5_2-D2                             
REMARK     2: T0372_D2.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0372TS464_5_2-D2.T0372_D2.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   21  172   5.0   18   2.50   11.11   8.981
REMARK  ---------------------------------------------------------- 
MOLECULE T0372TS464_5_2-D2
REMARK PARENT number 2
PFRMAT TS
TARGET T0372
PARENT N/A
ATOM     14  CA  SER   128      45.469  41.457  25.683  1.00  0.00
ATOM     15  CA  ASP   129      41.767  42.194  25.138  1.00  0.00
ATOM     16  CA  LEU   130      41.458  44.959  27.751  1.00  0.00
ATOM     17  CA  ALA   131      44.963  46.275  26.998  1.00  0.00
ATOM     18  CA  THR   132      44.422  46.178  23.271  1.00  0.00
ATOM     19  CA  ALA   193      34.992  34.554  31.804  1.00  0.00
ATOM     20  CA  LEU   194      32.732  36.444  29.376  1.00  0.00
ATOM     21  CA  ILE   195      30.886  38.198  32.205  1.00  0.00
ATOM     22  CA  TYR   196      34.128  38.847  34.081  1.00  0.00
ATOM     23  CA  ALA   197      35.710  40.150  30.872  1.00  0.00
ATOM     24  CA  LEU   198      32.866  42.693  30.418  1.00  0.00
ATOM     25  CA  HIS   199      33.423  43.926  33.977  1.00  0.00
ATOM     26  CA  ASN   200      37.086  44.515  33.181  1.00  0.00
ATOM     27  CA  PHE   201      36.177  46.209  29.904  1.00  0.00
ATOM     28  CA  GLU   202      33.689  48.521  31.355  1.00  0.00
ATOM     29  CA  ALA   203      36.011  49.298  34.249  1.00  0.00
ATOM     30  CA  LEU   204      38.405  50.638  31.644  1.00  0.00
ATOM     31  CA  GLY   205      36.341  53.051  29.590  1.00  0.00
ATOM     32  CA  LEU   206      35.662  50.565  26.797  1.00  0.00
ATOM     33  CA  THR   207      32.028  50.405  25.665  1.00  0.00
ATOM     34  CA  GLY   208      31.220  46.708  25.490  1.00  0.00
TER
END
