
PFRMAT TS
TARGET T0285
AUTHOR SAM_T06_server
REMARK   6 
REMARK   6 T0285 model 2 Mon May 15 19:05:08 2006
METHOD The SAM-T06 server uses methods similar to SAM_T04 in CASP6 and
METHOD the SAM-T02 method in CASP5.
METHOD 
METHOD We start with a fully automated method:
METHOD    
METHOD     Use the SAM-T2K and SAM-T04 methods for finding homologs of the
METHOD       target and aligning them.
METHOD 
METHOD     Make local structure predictions using neural nets and the
METHOD       multiple alignments.  Different neural nets are used for the
METHOD       SAM-T2K alignments and the SAM-T04 alignments.
METHOD       We currently use 8 local-structure alphabets: 
METHOD 	DSSP
METHOD 	STRIDE
METHOD 	STR2	an extended version of DSSP that splits the beta strands
METHOD 		into multiple classes (parallel/antiparallel/mixed,
METHOD 					edge/center)
METHOD 	ALPHA	an discretization of the alpha torsion angle:
METHOD 		CA(i-i), CA(i), CA(i+1), CA(i+2)
METHOD 	BYS	a discretization of Ramachandran plots, due to Bystroff
METHOD 	CB_burial_14_7	a 7-state discretization of the number of C_beta
METHOD 		atoms in a 14 Angstrom radius sphere around the C_beta.
METHOD 	near-backbone-11 an 11-state discretization of the number of
METHOD 	      residues (represented by near-backbone points) in a 
METHOD 	      9.65 Angstrom radius sphere around the sidechain proxy
METHOD 	      spot for the residue.
METHOD 	DSSP_EHL2	CASP's collapse of the DSSP alphabet
METHOD 			DSSP_EHL2 is not predicted directly by a
METHOD 			neural net, but is computed as a weighted
METHOD 			average of the other backbone alphabet predictions. 
METHOD     
METHOD     We make 2-track HMMs with each alphabet (1.0 amino acid + 0.3 local structure)
METHOD       and use them to score a template library of 6400 (t04) or 9900 (t2k) templates
METHOD       We also used a single-track HMM to score not just the template
METHOD       library, but a non-redundant copy of the entire PDB.
METHOD 
METHOD     We also made a few 3-track HMMs (AA, str2, CB_burial_14_7 and 
METHOD       AA, str2, near-backbone-11) for finding and aligning more remote
METHOD       homologs.
METHOD     
METHOD     One-track HMMs built from the template library multiple alignments
METHOD        were used to score the target sequence (for early targets, only
METHOD        t2k template library was searched this way).
METHOD 
METHOD     All the logs of e-values were combined in a weighted average (with
METHOD        rather arbitrary weights, since we did not have time to
METHOD        optimize them), and the best templates ranked.  Ranking was
METHOD        separate for predictions from the t2k and t04 multiple alignments.
METHOD     
METHOD     Alignments of the target to the top templates were made using
METHOD       several different alignment methods (mainly using the SAM hmmscore
METHOD       program, but a few alignments were made with Bob Edgar's MUSCLE
METHOD       profile-profile aligner).
METHOD 
METHOD     Generate fragments (short 9-residue alignments for each position)
METHOD       using SAM's "fragfinder" program and the 3-track HMM.
METHOD 
METHOD     Then the "undertaker" program (named because it optimizes burial)
METHOD       is used to try to combine the alignments and the fragments into
METHOD       a consistent 3D model.  No single alignment or parent template
METHOD       was used, though in many cases one had much more influence than
METHOD       the others.  The alignment scores were not passed to undertaker,
METHOD       but were used only to pick the set of alignments and fragments
METHOD       that undertaker would see.  Helix and strand constraints
METHOD       generated from the secondary-structure predictions are passed to
METHOD       undertaker to use in the cost function.
METHOD 
METHOD     One important change in this server over previous methods is that
METHOD     sheet constraints are extracted from the top few alignments and
METHOD     passed to undertaker. 
METHOD -------------
MODEL  2
PARENT N/A
ATOM      2  N   MET    63     -18.997   8.014 -10.206  1.00  0.00
ATOM      3  CA  MET    63     -17.767   7.242 -10.055  1.00  0.00
ATOM      4  CB  MET    63     -16.600   7.953 -10.742  1.00  0.00
ATOM      5  CG  MET    63     -16.702   7.991 -12.258  1.00  0.00
ATOM      6  SD  MET    63     -15.343   8.894 -13.024  1.00  0.00
ATOM      7  CE  MET    63     -13.990   7.748 -12.771  1.00  0.00
ATOM      8  O   MET    63     -18.163   7.829  -7.737  1.00  0.00
ATOM      9  C   MET    63     -17.525   7.133  -8.561  1.00  0.00
ATOM     10  N   VAL    64     -16.578   6.279  -8.205  1.00  0.00
ATOM     11  CA  VAL    64     -16.257   6.011  -6.815  1.00  0.00
ATOM     12  CB  VAL    64     -15.650   4.607  -6.636  1.00  0.00
ATOM     13  CG1 VAL    64     -16.636   3.539  -7.082  1.00  0.00
ATOM     14  CG2 VAL    64     -14.381   4.465  -7.463  1.00  0.00
ATOM     15  O   VAL    64     -14.485   7.579  -7.057  1.00  0.00
ATOM     16  C   VAL    64     -15.255   7.014  -6.286  1.00  0.00
ATOM     17  N   LEU    65     -15.210   7.206  -4.968  1.00  0.00
ATOM     18  CA  LEU    65     -14.250   8.091  -4.313  1.00  0.00
ATOM     19  CB  LEU    65     -14.936   9.379  -3.852  1.00  0.00
ATOM     20  CG  LEU    65     -15.542  10.255  -4.952  1.00  0.00
ATOM     21  CD1 LEU    65     -16.373  11.375  -4.349  1.00  0.00
ATOM     22  CD2 LEU    65     -14.447  10.879  -5.804  1.00  0.00
ATOM     23  O   LEU    65     -13.792   7.842  -1.960  1.00  0.00
ATOM     24  C   LEU    65     -13.666   7.369  -3.100  1.00  0.00
ATOM     25  N   ALA    66     -13.048   6.184  -3.315  1.00  0.00
ATOM     26  CA  ALA    66     -12.530   5.393  -2.199  1.00  0.00
ATOM     27  CB  ALA    66     -12.685   3.907  -2.484  1.00  0.00
ATOM     28  O   ALA    66     -10.402   6.376  -2.748  1.00  0.00
ATOM     29  C   ALA    66     -11.052   5.680  -1.965  1.00  0.00
ATOM     30  N   PRO    67     -10.586   5.155  -0.845  1.00  0.00
ATOM     31  CA  PRO    67      -9.201   5.259  -0.419  1.00  0.00
ATOM     32  CB  PRO    67      -9.296   5.555   1.078  1.00  0.00
ATOM     33  CG  PRO    67     -10.448   4.734   1.549  1.00  0.00
ATOM     34  CD  PRO    67     -11.482   4.803   0.461  1.00  0.00
ATOM     35  O   PRO    67      -9.115   2.953  -0.977  1.00  0.00
ATOM     36  C   PRO    67      -8.462   3.962  -0.689  1.00  0.00
ATOM     37  N   ARG    68      -7.137   3.921  -0.557  1.00  0.00
ATOM     38  CA  ARG    68      -6.400   2.716  -0.883  1.00  0.00
ATOM     39  CB  ARG    68      -6.306   2.540  -2.399  1.00  0.00
ATOM     40  CG  ARG    68      -5.520   3.632  -3.104  1.00  0.00
ATOM     41  CD  ARG    68      -5.473   3.399  -4.605  1.00  0.00
ATOM     42  NE  ARG    68      -4.888   4.531  -5.318  1.00  0.00
ATOM     43  CZ  ARG    68      -3.582   4.713  -5.491  1.00  0.00
ATOM     44  NH1 ARG    68      -3.143   5.774  -6.151  1.00  0.00
ATOM     45  NH2 ARG    68      -2.721   3.833  -5.000  1.00  0.00
ATOM     46  O   ARG    68      -4.595   4.059  -0.108  1.00  0.00
ATOM     47  C   ARG    68      -5.036   2.909  -0.275  1.00  0.00
ATOM     48  N   LEU    69      -4.418   1.797   0.142  1.00  0.00
ATOM     49  CA  LEU    69      -3.064   1.828   0.708  1.00  0.00
ATOM     50  CB  LEU    69      -2.793   0.558   1.518  1.00  0.00
ATOM     51  CG  LEU    69      -3.681   0.333   2.745  1.00  0.00
ATOM     52  CD1 LEU    69      -3.369  -1.005   3.397  1.00  0.00
ATOM     53  CD2 LEU    69      -3.458   1.429   3.777  1.00  0.00
ATOM     54  O   LEU    69      -2.175   1.364  -1.497  1.00  0.00
ATOM     55  C   LEU    69      -2.015   1.921  -0.401  1.00  0.00
ATOM     56  N   THR    70      -0.960   2.706  -0.156  1.00  0.00
ATOM     57  CA  THR    70       0.172   2.788  -1.065  1.00  0.00
ATOM     58  CB  THR    70       0.456   4.243  -1.484  1.00  0.00
ATOM     59  CG2 THR    70       1.646   4.302  -2.429  1.00  0.00
ATOM     60  OG1 THR    70      -0.693   4.785  -2.148  1.00  0.00
ATOM     61  O   THR    70       1.460   2.466   0.929  1.00  0.00
ATOM     62  C   THR    70       1.333   2.208  -0.270  1.00  0.00
ATOM     63  N   ALA    71       2.152   1.369  -0.895  1.00  0.00
ATOM     64  CA  ALA    71       3.339   0.832  -0.252  1.00  0.00
ATOM     65  CB  ALA    71       3.019  -0.486   0.437  1.00  0.00
ATOM     66  O   ALA    71       4.202   0.949  -2.548  1.00  0.00
ATOM     67  C   ALA    71       4.398   0.611  -1.352  1.00  0.00
ATOM     68  N   LYS    72       5.590   0.174  -0.935  1.00  0.00
ATOM     69  CA  LYS    72       6.656  -0.184  -1.862  1.00  0.00
ATOM     70  CB  LYS    72       7.871  -0.719  -1.099  1.00  0.00
ATOM     71  CG  LYS    72       9.064  -1.046  -1.982  1.00  0.00
ATOM     72  CD  LYS    72      10.252  -1.507  -1.154  1.00  0.00
ATOM     73  CE  LYS    72      11.454  -1.807  -2.036  1.00  0.00
ATOM     74  NZ  LYS    72      12.620  -2.286  -1.242  1.00  0.00
ATOM     75  O   LYS    72       5.476  -2.204  -2.449  1.00  0.00
ATOM     76  C   LYS    72       6.199  -1.273  -2.847  1.00  0.00
ATOM     80  N   PRO    74       6.558  -1.146  -4.141  1.00  0.00
ATOM     81  CA  PRO    74       6.319  -2.182  -5.139  1.00  0.00
ATOM     82  CB  PRO    74       7.192  -1.764  -6.324  1.00  0.00
ATOM     83  CG  PRO    74       7.296  -0.280  -6.205  1.00  0.00
ATOM     84  CD  PRO    74       7.397   0.014  -4.735  1.00  0.00
ATOM     85  O   PRO    74       7.759  -3.668  -3.931  1.00  0.00
ATOM     86  C   PRO    74       6.723  -3.524  -4.590  1.00  0.00
ATOM     87  N   TYR    75       5.781  -4.459  -4.735  1.00  0.00
ATOM     88  CA  TYR    75       6.011  -5.825  -4.280  1.00  0.00
ATOM     89  CB  TYR    75       7.478  -6.214  -4.476  1.00  0.00
ATOM     90  CG  TYR    75       7.908  -6.271  -5.923  1.00  0.00
ATOM     91  CD1 TYR    75       8.637  -5.233  -6.491  1.00  0.00
ATOM     92  CD2 TYR    75       7.586  -7.363  -6.719  1.00  0.00
ATOM     93  CE1 TYR    75       9.036  -5.276  -7.813  1.00  0.00
ATOM     94  CE2 TYR    75       7.977  -7.423  -8.044  1.00  0.00
ATOM     95  CZ  TYR    75       8.708  -6.368  -8.587  1.00  0.00
ATOM     96  OH  TYR    75       9.104  -6.413  -9.905  1.00  0.00
ATOM     97  O   TYR    75       5.943  -7.216  -2.358  1.00  0.00
ATOM     98  C   TYR    75       5.704  -6.089  -2.815  1.00  0.00
ATOM     99  N   ASP    76       5.207  -5.109  -2.055  1.00  0.00
ATOM    100  CA  ASP    76       4.816  -5.296  -0.669  1.00  0.00
ATOM    101  CB  ASP    76       4.297  -3.985  -0.076  1.00  0.00
ATOM    102  CG  ASP    76       4.118  -4.055   1.428  1.00  0.00
ATOM    103  OD1 ASP    76       4.388  -5.128   2.008  1.00  0.00
ATOM    104  OD2 ASP    76       3.708  -3.038   2.025  1.00  0.00
ATOM    105  O   ASP    76       2.739  -6.288  -1.299  1.00  0.00
ATOM    106  C   ASP    76       3.705  -6.347  -0.550  1.00  0.00
ATOM    107  N   LYS    77       3.710  -7.279   0.385  1.00  0.00
ATOM    108  CA  LYS    77       2.598  -8.146   0.631  1.00  0.00
ATOM    109  CB  LYS    77       3.051  -9.401   1.378  1.00  0.00
ATOM    110  CG  LYS    77       3.988 -10.295   0.581  1.00  0.00
ATOM    111  CD  LYS    77       4.398 -11.520   1.382  1.00  0.00
ATOM    112  CE  LYS    77       5.364 -12.393   0.598  1.00  0.00
ATOM    113  NZ  LYS    77       5.794 -13.586   1.381  1.00  0.00
ATOM    114  O   LYS    77       0.535  -8.242   1.821  1.00  0.00
ATOM    115  C   LYS    77       1.482  -7.513   1.478  1.00  0.00
ATOM    116  N   VAL    78       1.565  -6.206   1.852  1.00  0.00
ATOM    117  CA  VAL    78       0.619  -5.532   2.723  1.00  0.00
ATOM    118  CB  VAL    78       1.024  -4.067   2.967  1.00  0.00
ATOM    119  CG1 VAL    78       0.925  -3.264   1.680  1.00  0.00
ATOM    120  CG2 VAL    78       0.112  -3.429   4.004  1.00  0.00
ATOM    121  O   VAL    78      -0.954  -5.337   0.905  1.00  0.00
ATOM    122  C   VAL    78      -0.769  -5.538   2.105  1.00  0.00
ATOM    123  N   GLN    79      -1.764  -5.717   2.974  1.00  0.00
ATOM    124  CA  GLN    79      -3.164  -5.744   2.564  1.00  0.00
ATOM    125  CB  GLN    79      -3.723  -7.166   2.656  1.00  0.00
ATOM    126  CG  GLN    79      -3.028  -8.164   1.745  1.00  0.00
ATOM    127  CD  GLN    79      -3.623  -9.556   1.847  1.00  0.00
ATOM    128  OE1 GLN    79      -4.433  -9.832   2.732  1.00  0.00
ATOM    129  NE2 GLN    79      -3.220 -10.438   0.939  1.00  0.00
ATOM    130  O   GLN    79      -3.506  -4.705   4.645  1.00  0.00
ATOM    131  C   GLN    79      -3.935  -4.828   3.493  1.00  0.00
ATOM    132  N   ASP    80      -5.094  -4.263   3.148  1.00  0.00
ATOM    133  CA  ASP    80      -5.881  -3.456   4.112  1.00  0.00
ATOM    134  CB  ASP    80      -6.878  -2.562   3.372  1.00  0.00
ATOM    135  CG  ASP    80      -7.420  -1.446   4.245  1.00  0.00
ATOM    136  OD1 ASP    80      -6.844  -1.205   5.326  1.00  0.00
ATOM    137  OD2 ASP    80      -8.420  -0.814   3.847  1.00  0.00
ATOM    138  O   ASP    80      -7.901  -3.989   5.284  1.00  0.00
ATOM    139  C   ASP    80      -6.707  -4.256   5.121  1.00  0.00
ATOM    140  N   ARG    81      -6.093  -5.225   5.824  1.00  0.00
ATOM    141  CA  ARG    81      -6.784  -6.086   6.769  1.00  0.00
ATOM    142  CB  ARG    81      -6.691  -7.547   6.329  1.00  0.00
ATOM    143  CG  ARG    81      -7.387  -7.844   5.010  1.00  0.00
ATOM    144  CD  ARG    81      -7.153  -9.281   4.573  1.00  0.00
ATOM    145  NE  ARG    81      -7.857  -9.598   3.333  1.00  0.00
ATOM    146  CZ  ARG    81      -7.724 -10.743   2.669  1.00  0.00
ATOM    147  NH1 ARG    81      -8.406 -10.942   1.550  1.00  0.00
ATOM    148  NH2 ARG    81      -6.909 -11.683   3.127  1.00  0.00
ATOM    149  O   ARG    81      -4.890  -5.551   8.110  1.00  0.00
ATOM    150  C   ARG    81      -6.081  -5.865   8.075  1.00  0.00
ATOM    151  N   ASN    82      -6.752  -6.182   9.151  1.00  0.00
ATOM    152  CA  ASN    82      -6.185  -5.939  10.441  1.00  0.00
ATOM    153  CB  ASN    82      -7.245  -6.107  11.533  1.00  0.00
ATOM    154  CG  ASN    82      -8.248  -4.970  11.551  1.00  0.00
ATOM    155  ND2 ASN    82      -9.411  -5.219  12.139  1.00  0.00
ATOM    156  OD1 ASN    82      -7.975  -3.882  11.043  1.00  0.00
ATOM    157  O   ASN    82      -4.059  -6.643  11.280  1.00  0.00
ATOM    158  C   ASN    82      -5.064  -6.941  10.660  1.00  0.00
ATOM    159  N   ARG    83      -5.186  -8.108  10.046  1.00  0.00
ATOM    160  CA  ARG    83      -4.268  -9.212  10.106  1.00  0.00
ATOM    161  CB  ARG    83      -4.828 -10.416   9.348  1.00  0.00
ATOM    162  CG  ARG    83      -6.011 -11.083  10.030  1.00  0.00
ATOM    163  CD  ARG    83      -6.546 -12.240   9.202  1.00  0.00
ATOM    164  NE  ARG    83      -7.714 -12.863   9.820  1.00  0.00
ATOM    165  CZ  ARG    83      -8.407 -13.858   9.277  1.00  0.00
ATOM    166  NH1 ARG    83      -9.456 -14.361   9.912  1.00  0.00
ATOM    167  NH2 ARG    83      -8.049 -14.347   8.098  1.00  0.00
ATOM    168  O   ARG    83      -1.861  -8.964  10.041  1.00  0.00
ATOM    169  C   ARG    83      -2.951  -8.802   9.479  1.00  0.00
ATOM    170  N   LYS    84      -3.064  -8.175   8.314  1.00  0.00
ATOM    171  CA  LYS    84      -1.886  -7.751   7.607  1.00  0.00
ATOM    172  CB  LYS    84      -2.226  -7.396   6.159  1.00  0.00
ATOM    173  CG  LYS    84      -2.607  -8.593   5.300  1.00  0.00
ATOM    174  CD  LYS    84      -1.415  -9.509   5.073  1.00  0.00
ATOM    175  CE  LYS    84      -1.792 -10.700   4.208  1.00  0.00
ATOM    176  NZ  LYS    84      -0.633 -11.604   3.971  1.00  0.00
ATOM    177  O   LYS    84      -0.025  -6.438   8.266  1.00  0.00
ATOM    178  C   LYS    84      -1.238  -6.525   8.231  1.00  0.00
ATOM    179  N   LEU    85      -1.990  -5.572   8.772  1.00  0.00
ATOM    180  CA  LEU    85      -1.445  -4.325   9.243  1.00  0.00
ATOM    181  CB  LEU    85      -2.507  -3.223   9.192  1.00  0.00
ATOM    182  CG  LEU    85      -3.045  -2.865   7.805  1.00  0.00
ATOM    183  CD1 LEU    85      -4.159  -1.834   7.911  1.00  0.00
ATOM    184  CD2 LEU    85      -1.941  -2.284   6.934  1.00  0.00
ATOM    185  O   LEU    85      -0.220  -3.427  11.047  1.00  0.00
ATOM    186  C   LEU    85      -0.940  -4.347  10.650  1.00  0.00
ATOM    187  N   TYR    86      -1.218  -5.345  11.466  1.00  0.00
ATOM    188  CA  TYR    86      -0.694  -5.303  12.812  1.00  0.00
ATOM    189  CB  TYR    86      -1.296  -6.428  13.657  1.00  0.00
ATOM    190  CG  TYR    86      -0.842  -6.421  15.099  1.00  0.00
ATOM    191  CD1 TYR    86      -1.363  -5.506  16.004  1.00  0.00
ATOM    192  CD2 TYR    86       0.107  -7.329  15.550  1.00  0.00
ATOM    193  CE1 TYR    86      -0.955  -5.492  17.324  1.00  0.00
ATOM    194  CE2 TYR    86       0.528  -7.330  16.866  1.00  0.00
ATOM    195  CZ  TYR    86      -0.011  -6.401  17.755  1.00  0.00
ATOM    196  OH  TYR    86       0.397  -6.390  19.069  1.00  0.00
ATOM    197  O   TYR    86       1.363  -6.410  12.217  1.00  0.00
ATOM    198  C   TYR    86       0.804  -5.469  12.771  1.00  0.00
ATOM    199  N   GLY    87       1.426  -4.416  13.261  1.00  0.00
ATOM    200  CA  GLY    87       2.873  -4.331  13.317  1.00  0.00
ATOM    201  O   GLY    87       4.454  -2.620  12.652  1.00  0.00
ATOM    202  C   GLY    87       3.380  -3.204  12.430  1.00  0.00
ATOM    203  N   ARG    88       2.581  -2.846  11.432  1.00  0.00
ATOM    204  CA  ARG    88       2.989  -1.874  10.472  1.00  0.00
ATOM    205  CB  ARG    88       2.215  -2.054   9.164  1.00  0.00
ATOM    206  CG  ARG    88       2.506  -3.361   8.446  1.00  0.00
ATOM    207  CD  ARG    88       1.693  -3.481   7.168  1.00  0.00
ATOM    208  NE  ARG    88       1.936  -4.749   6.482  1.00  0.00
ATOM    209  CZ  ARG    88       2.986  -4.988   5.704  1.00  0.00
ATOM    210  NH1 ARG    88       3.123  -6.171   5.121  1.00  0.00
ATOM    211  NH2 ARG    88       3.897  -4.044   5.509  1.00  0.00
ATOM    212  O   ARG    88       2.122  -0.307  12.064  1.00  0.00
ATOM    213  C   ARG    88       2.726  -0.476  11.005  1.00  0.00
ATOM    214  N   HIS    89       3.244   0.531  10.289  1.00  0.00
ATOM    215  CA  HIS    89       3.143   1.944  10.628  1.00  0.00
ATOM    216  CB  HIS    89       4.529   2.529  10.905  1.00  0.00
ATOM    217  CG  HIS    89       5.244   1.875  12.046  1.00  0.00
ATOM    218  CD2 HIS    89       6.231   0.813  12.182  1.00  0.00
ATOM    219  ND1 HIS    89       5.041   2.240  13.359  1.00  0.00
ATOM    220  CE1 HIS    89       5.817   1.479  14.151  1.00  0.00
ATOM    221  NE2 HIS    89       6.534   0.622  13.451  1.00  0.00
ATOM    222  O   HIS    89       3.050   2.266   8.268  1.00  0.00
ATOM    223  C   HIS    89       2.508   2.455   9.363  1.00  0.00
ATOM    224  N   ILE    90       1.320   3.023   9.533  1.00  0.00
ATOM    225  CA  ILE    90       0.501   3.500   8.444  1.00  0.00
ATOM    226  CB  ILE    90      -0.904   2.871   8.477  1.00  0.00
ATOM    227  CG1 ILE    90      -0.811   1.349   8.343  1.00  0.00
ATOM    228  CG2 ILE    90      -1.754   3.405   7.335  1.00  0.00
ATOM    229  CD1 ILE    90      -2.121   0.634   8.592  1.00  0.00
ATOM    230  O   ILE    90       0.089   5.464   9.698  1.00  0.00
ATOM    231  C   ILE    90       0.406   4.995   8.613  1.00  0.00
ATOM    232  N   THR    91       0.666   5.789   7.603  1.00  0.00
ATOM    233  CA  THR    91       0.564   7.217   7.763  1.00  0.00
ATOM    234  CB  THR    91       1.712   7.949   7.042  1.00  0.00
ATOM    235  CG2 THR    91       3.057   7.507   7.597  1.00  0.00
ATOM    236  OG1 THR    91       1.668   7.649   5.640  1.00  0.00
ATOM    237  O   THR    91      -1.244   7.086   6.185  1.00  0.00
ATOM    238  C   THR    91      -0.744   7.639   7.177  1.00  0.00
ATOM    239  N   LEU    92      -1.275   8.672   7.799  1.00  0.00
ATOM    240  CA  LEU    92      -2.553   9.204   7.406  1.00  0.00
ATOM    241  CB  LEU    92      -3.657   8.676   8.324  1.00  0.00
ATOM    242  CG  LEU    92      -3.505   8.984   9.815  1.00  0.00
ATOM    243  CD1 LEU    92      -4.017  10.381  10.129  1.00  0.00
ATOM    244  CD2 LEU    92      -4.293   7.990  10.653  1.00  0.00
ATOM    245  O   LEU    92      -1.631  11.280   8.302  1.00  0.00
ATOM    246  C   LEU    92      -2.438  10.738   7.523  1.00  0.00
ATOM    247  N   ASN    93      -3.152  11.490   6.695  1.00  0.00
ATOM    248  CA  ASN    93      -3.178  12.940   6.807  1.00  0.00
ATOM    249  CB  ASN    93      -3.747  13.565   5.531  1.00  0.00
ATOM    250  CG  ASN    93      -3.634  15.077   5.523  1.00  0.00
ATOM    251  ND2 ASN    93      -3.631  15.663   4.331  1.00  0.00
ATOM    252  OD1 ASN    93      -3.550  15.709   6.577  1.00  0.00
ATOM    253  O   ASN    93      -5.171  12.910   8.170  1.00  0.00
ATOM    254  C   ASN    93      -4.055  13.382   7.995  1.00  0.00
ATOM    255  N   ASP    94      -3.587  14.305   8.825  1.00  0.00
ATOM    256  CA  ASP    94      -4.356  14.638   9.983  1.00  0.00
ATOM    257  CB  ASP    94      -3.544  15.523  10.930  1.00  0.00
ATOM    258  CG  ASP    94      -2.456  14.756  11.655  1.00  0.00
ATOM    259  OD1 ASP    94      -2.455  13.510  11.575  1.00  0.00
ATOM    260  OD2 ASP    94      -1.606  15.401  12.306  1.00  0.00
ATOM    261  O   ASP    94      -5.646  16.218   8.658  1.00  0.00
ATOM    262  C   ASP    94      -5.630  15.397   9.568  1.00  0.00
ATOM    263  N   GLY    95      -6.712  15.033  10.214  1.00  0.00
ATOM    264  CA  GLY    95      -8.014  15.604  10.002  1.00  0.00
ATOM    265  O   GLY    95      -9.794  15.652   8.386  1.00  0.00
ATOM    266  C   GLY    95      -8.738  15.104   8.746  1.00  0.00
ATOM    267  N   ASN    96      -8.230  14.124   7.989  1.00  0.00
ATOM    268  CA  ASN    96      -9.001  13.725   6.842  1.00  0.00
ATOM    269  CB  ASN    96      -8.080  13.307   5.695  1.00  0.00
ATOM    270  CG  ASN    96      -7.279  12.061   6.016  1.00  0.00
ATOM    271  ND2 ASN    96      -6.340  11.721   5.141  1.00  0.00
ATOM    272  OD1 ASN    96      -7.504  11.412   7.036  1.00  0.00
ATOM    273  O   ASN    96      -9.909  11.942   8.238  1.00  0.00
ATOM    274  C   ASN    96      -9.924  12.535   7.160  1.00  0.00
ATOM    275  N   SER    97     -10.761  12.162   6.194  1.00  0.00
ATOM    276  CA  SER    97     -11.664  11.021   6.297  1.00  0.00
ATOM    277  CB  SER    97     -12.524  10.905   5.037  1.00  0.00
ATOM    278  OG  SER    97     -13.405  12.009   4.916  1.00  0.00
ATOM    279  O   SER    97     -11.230   8.872   7.192  1.00  0.00
ATOM    280  C   SER    97     -10.858   9.764   6.458  1.00  0.00
ATOM    281  N   VAL    98      -9.699   9.697   5.783  1.00  0.00
ATOM    282  CA  VAL    98      -8.789   8.572   5.965  1.00  0.00
ATOM    283  CB  VAL    98      -7.495   8.757   5.152  1.00  0.00
ATOM    284  CG1 VAL    98      -6.483   7.678   5.509  1.00  0.00
ATOM    285  CG2 VAL    98      -7.785   8.668   3.660  1.00  0.00
ATOM    286  O   VAL    98      -8.358   7.198   7.812  1.00  0.00
ATOM    287  C   VAL    98      -8.349   8.350   7.394  1.00  0.00
ATOM    288  N   LYS    99      -8.073   9.372   8.214  1.00  0.00
ATOM    289  CA  LYS    99      -7.619   9.254   9.606  1.00  0.00
ATOM    290  CB  LYS    99      -7.115  10.603  10.123  1.00  0.00
ATOM    291  CG  LYS    99      -6.566  10.560  11.539  1.00  0.00
ATOM    292  CD  LYS    99      -6.000  11.908  11.953  1.00  0.00
ATOM    293  CE  LYS    99      -5.473  11.871  13.379  1.00  0.00
ATOM    294  NZ  LYS    99      -4.935  13.192  13.807  1.00  0.00
ATOM    295  O   LYS    99      -8.679   7.899  11.197  1.00  0.00
ATOM    296  C   LYS    99      -8.821   8.796  10.377  1.00  0.00
ATOM    297  N   VAL   100     -10.019   9.319  10.104  1.00  0.00
ATOM    298  CA  VAL   100     -11.193   8.823  10.789  1.00  0.00
ATOM    299  CB  VAL   100     -12.475   9.509  10.281  1.00  0.00
ATOM    300  CG1 VAL   100     -13.706   8.838  10.866  1.00  0.00
ATOM    301  CG2 VAL   100     -12.489  10.976  10.685  1.00  0.00
ATOM    302  O   VAL   100     -11.596   6.575  11.589  1.00  0.00
ATOM    303  C   VAL   100     -11.424   7.326  10.621  1.00  0.00
ATOM    304  N   VAL   101     -11.314   6.851   9.393  1.00  0.00
ATOM    305  CA  VAL   101     -11.443   5.435   9.064  1.00  0.00
ATOM    306  CB  VAL   101     -11.325   5.195   7.548  1.00  0.00
ATOM    307  CG1 VAL   101     -11.264   3.705   7.248  1.00  0.00
ATOM    308  CG2 VAL   101     -12.525   5.782   6.819  1.00  0.00
ATOM    309  O   VAL   101     -10.616   3.611  10.392  1.00  0.00
ATOM    310  C   VAL   101     -10.360   4.631   9.750  1.00  0.00
ATOM    311  N   THR   102      -9.106   5.091   9.603  1.00  0.00
ATOM    312  CA  THR   102      -7.947   4.386  10.133  1.00  0.00
ATOM    313  CB  THR   102      -6.631   5.052   9.688  1.00  0.00
ATOM    314  CG2 THR   102      -5.437   4.323  10.287  1.00  0.00
ATOM    315  OG1 THR   102      -6.531   5.012   8.260  1.00  0.00
ATOM    316  O   THR   102      -7.610   3.371  12.273  1.00  0.00
ATOM    317  C   THR   102      -7.968   4.373  11.648  1.00  0.00
ATOM    318  N   ILE   103      -8.432   5.439  12.279  1.00  0.00
ATOM    319  CA  ILE   103      -8.484   5.519  13.732  1.00  0.00
ATOM    320  CB  ILE   103      -8.866   6.935  14.206  1.00  0.00
ATOM    321  CG1 ILE   103      -7.755   7.929  13.865  1.00  0.00
ATOM    322  CG2 ILE   103      -9.085   6.951  15.711  1.00  0.00
ATOM    323  CD1 ILE   103      -8.153   9.377  14.052  1.00  0.00
ATOM    324  O   ILE   103      -9.156   3.688  15.090  1.00  0.00
ATOM    325  C   ILE   103      -9.514   4.549  14.286  1.00  0.00
ATOM    326  N   SER   104     -10.753   4.545  13.772  1.00  0.00
ATOM    327  CA  SER   104     -11.799   3.628  14.251  1.00  0.00
ATOM    328  CB  SER   104     -13.160   4.020  13.673  1.00  0.00
ATOM    329  OG  SER   104     -13.580   5.281  14.163  1.00  0.00
ATOM    330  O   SER   104     -11.788   1.303  14.707  1.00  0.00
ATOM    331  C   SER   104     -11.575   2.187  13.877  1.00  0.00
ATOM    332  N   ALA   105     -11.181   1.902  12.640  1.00  0.00
ATOM    333  CA  ALA   105     -11.001   0.531  12.234  1.00  0.00
ATOM    334  CB  ALA   105     -11.158   0.400  10.725  1.00  0.00
ATOM    335  O   ALA   105      -9.551  -1.302  12.729  1.00  0.00
ATOM    336  C   ALA   105      -9.648  -0.077  12.565  1.00  0.00
ATOM    337  N   GLY   106      -8.579   0.716  12.673  1.00  0.00
ATOM    338  CA  GLY   106      -7.268   0.122  12.792  1.00  0.00
ATOM    339  O   GLY   106      -6.050  -0.263  14.786  1.00  0.00
ATOM    340  C   GLY   106      -6.516   0.579  14.015  1.00  0.00
ATOM    341  N   ARG   107      -6.368   1.862  14.286  1.00  0.00
ATOM    342  CA  ARG   107      -5.627   2.280  15.461  1.00  0.00
ATOM    343  CB  ARG   107      -5.583   3.806  15.553  1.00  0.00
ATOM    344  CG  ARG   107      -4.791   4.335  16.737  1.00  0.00
ATOM    345  CD  ARG   107      -4.693   5.851  16.703  1.00  0.00
ATOM    346  NE  ARG   107      -3.970   6.380  17.858  1.00  0.00
ATOM    347  CZ  ARG   107      -3.786   7.673  18.097  1.00  0.00
ATOM    348  NH1 ARG   107      -3.115   8.061  19.174  1.00  0.00
ATOM    349  NH2 ARG   107      -4.273   8.579  17.258  1.00  0.00
ATOM    350  O   ARG   107      -5.477   1.291  17.656  1.00  0.00
ATOM    351  C   ARG   107      -6.226   1.774  16.791  1.00  0.00
ATOM    352  N   ASP   108      -7.557   1.746  16.964  1.00  0.00
ATOM    353  CA  ASP   108      -8.151   1.187  18.169  1.00  0.00
ATOM    354  CB  ASP   108      -9.674   1.319  18.126  1.00  0.00
ATOM    355  CG  ASP   108     -10.143   2.748  18.325  1.00  0.00
ATOM    356  OD1 ASP   108      -9.313   3.594  18.720  1.00  0.00
ATOM    357  OD2 ASP   108     -11.337   3.019  18.087  1.00  0.00
ATOM    358  O   ASP   108      -7.812  -0.848  19.455  1.00  0.00
ATOM    359  C   ASP   108      -7.820  -0.301  18.345  1.00  0.00
ATOM    360  N   GLU   109      -7.483  -0.981  17.242  1.00  0.00
ATOM    361  CA  GLU   109      -7.182  -2.386  17.283  1.00  0.00
ATOM    362  CB  GLU   109      -7.754  -3.093  16.052  1.00  0.00
ATOM    363  CG  GLU   109      -9.274  -3.140  16.014  1.00  0.00
ATOM    364  CD  GLU   109      -9.809  -3.604  14.673  1.00  0.00
ATOM    365  OE1 GLU   109      -8.992  -3.854  13.762  1.00  0.00
ATOM    366  OE2 GLU   109     -11.044  -3.717  14.534  1.00  0.00
ATOM    367  O   GLU   109      -5.243  -3.726  17.113  1.00  0.00
ATOM    368  C   GLU   109      -5.690  -2.601  17.309  1.00  0.00
ATOM    369  N   GLY   110      -0.236  12.958   9.965  1.00  0.00
ATOM    370  CA  GLY   110       0.741  13.913   9.477  1.00  0.00
ATOM    371  O   GLY   110      -1.039  15.222   8.666  1.00  0.00
ATOM    372  C   GLY   110       0.082  15.225   9.175  1.00  0.00
ATOM    373  N   PRO   111       0.760  16.333   9.451  1.00  0.00
ATOM    374  CA  PRO   111       0.217  17.641   9.178  1.00  0.00
ATOM    375  CB  PRO   111       1.154  18.594   9.923  1.00  0.00
ATOM    376  CG  PRO   111       2.443  17.849  10.022  1.00  0.00
ATOM    377  CD  PRO   111       2.075  16.401  10.185  1.00  0.00
ATOM    378  O   PRO   111      -0.536  18.701   7.132  1.00  0.00
ATOM    379  C   PRO   111       0.218  17.897   7.689  1.00  0.00
ATOM    380  N   ASP   112       1.084  17.202   6.978  1.00  0.00
ATOM    381  CA  ASP   112       1.282  17.521   5.598  1.00  0.00
ATOM    382  CB  ASP   112       2.471  18.469   5.433  1.00  0.00
ATOM    383  CG  ASP   112       2.497  19.139   4.073  1.00  0.00
ATOM    384  OD1 ASP   112       2.599  18.419   3.057  1.00  0.00
ATOM    385  OD2 ASP   112       2.416  20.385   4.023  1.00  0.00
ATOM    386  O   ASP   112       2.319  15.415   5.092  1.00  0.00
ATOM    387  C   ASP   112       1.562  16.309   4.737  1.00  0.00
ATOM    388  N   ARG   113       0.971  16.298   3.552  1.00  0.00
ATOM    389  CA  ARG   113       1.105  15.214   2.606  1.00  0.00
ATOM    390  CB  ARG   113       0.277  15.492   1.351  1.00  0.00
ATOM    391  CG  ARG   113      -1.225  15.400   1.566  1.00  0.00
ATOM    392  CD  ARG   113      -1.987  15.771   0.303  1.00  0.00
ATOM    393  NE  ARG   113      -3.433  15.709   0.498  1.00  0.00
ATOM    394  CZ  ARG   113      -4.327  16.088  -0.409  1.00  0.00
ATOM    395  NH1 ARG   113      -5.623  15.996  -0.143  1.00  0.00
ATOM    396  NH2 ARG   113      -3.923  16.559  -1.581  1.00  0.00
ATOM    397  O   ARG   113       2.902  13.821   1.965  1.00  0.00
ATOM    398  C   ARG   113       2.527  14.978   2.145  1.00  0.00
ATOM    399  N   ASP   114       3.339  16.032   2.007  1.00  0.00
ATOM    400  CA  ASP   114       4.746  15.901   1.620  1.00  0.00
ATOM    401  CB  ASP   114       5.431  17.270   1.613  1.00  0.00
ATOM    402  CG  ASP   114       4.995  18.131   0.443  1.00  0.00
ATOM    403  OD1 ASP   114       4.356  17.592  -0.486  1.00  0.00
ATOM    404  OD2 ASP   114       5.296  19.343   0.454  1.00  0.00
ATOM    405  O   ASP   114       6.329  14.176   2.093  1.00  0.00
ATOM    406  C   ASP   114       5.553  15.023   2.537  1.00  0.00
ATOM    407  N   ILE   115       5.353  15.233   3.830  1.00  0.00
ATOM    408  CA  ILE   115       6.031  14.462   4.849  1.00  0.00
ATOM    409  CB  ILE   115       5.761  15.024   6.256  1.00  0.00
ATOM    410  CG1 ILE   115       6.426  16.394   6.419  1.00  0.00
ATOM    411  CG2 ILE   115       6.318  14.090   7.320  1.00  0.00
ATOM    412  CD1 ILE   115       6.000  17.134   7.668  1.00  0.00
ATOM    413  O   ILE   115       6.360  12.163   5.315  1.00  0.00
ATOM    414  C   ILE   115       5.596  13.014   4.867  1.00  0.00
ATOM    415  N   ILE   116       4.365  12.712   4.437  1.00  0.00
ATOM    416  CA  ILE   116       3.923  11.318   4.356  1.00  0.00
ATOM    417  CB  ILE   116       2.427  11.219   4.001  1.00  0.00
ATOM    418  CG1 ILE   116       1.571  11.764   5.145  1.00  0.00
ATOM    419  CG2 ILE   116       2.034   9.771   3.751  1.00  0.00
ATOM    420  CD1 ILE   116       0.114  11.952   4.781  1.00  0.00
ATOM    421  O   ILE   116       5.370   9.589   3.479  1.00  0.00
ATOM    422  C   ILE   116       4.751  10.637   3.268  1.00  0.00
ATOM    423  N   TRP   117       4.788  11.265   2.103  1.00  0.00
ATOM    424  CA  TRP   117       5.489  10.704   0.979  1.00  0.00
ATOM    425  CB  TRP   117       5.336  11.601  -0.250  1.00  0.00
ATOM    426  CG  TRP   117       3.973  11.539  -0.872  1.00  0.00
ATOM    427  CD1 TRP   117       3.020  12.516  -0.857  1.00  0.00
ATOM    428  CD2 TRP   117       3.412  10.440  -1.601  1.00  0.00
ATOM    429  CE2 TRP   117       2.115  10.822  -1.997  1.00  0.00
ATOM    430  CE3 TRP   117       3.878   9.171  -1.956  1.00  0.00
ATOM    431  NE1 TRP   117       1.899  12.095  -1.531  1.00  0.00
ATOM    432  CZ2 TRP   117       1.281   9.981  -2.732  1.00  0.00
ATOM    433  CZ3 TRP   117       3.047   8.341  -2.684  1.00  0.00
ATOM    434  CH2 TRP   117       1.764   8.747  -3.067  1.00  0.00
ATOM    435  O   TRP   117       7.539   9.477   0.934  1.00  0.00
ATOM    436  C   TRP   117       6.976  10.547   1.246  1.00  0.00
ATOM    437  N   GLU   118       7.608  11.501   1.944  1.00  0.00
ATOM    438  CA  GLU   118       9.022  11.380   2.230  1.00  0.00
ATOM    439  CB  GLU   118       9.577  12.701   2.762  1.00  0.00
ATOM    440  CG  GLU   118       9.646  13.809   1.723  1.00  0.00
ATOM    441  CD  GLU   118      10.084  15.136   2.313  1.00  0.00
ATOM    442  OE1 GLU   118      10.262  15.207   3.548  1.00  0.00
ATOM    443  OE2 GLU   118      10.248  16.104   1.540  1.00  0.00
ATOM    444  O   GLU   118      10.222   9.540   3.145  1.00  0.00
ATOM    445  C   GLU   118       9.260  10.307   3.269  1.00  0.00
ATOM    446  N   MET   119       8.397  10.167   4.268  1.00  0.00
ATOM    447  CA  MET   119       8.566   9.079   5.218  1.00  0.00
ATOM    448  CB  MET   119       7.547   9.196   6.353  1.00  0.00
ATOM    449  CG  MET   119       7.789  10.371   7.284  1.00  0.00
ATOM    450  SD  MET   119       9.389  10.287   8.113  1.00  0.00
ATOM    451  CE  MET   119       9.135   8.883   9.195  1.00  0.00
ATOM    452  O   MET   119       9.067   6.735   5.063  1.00  0.00
ATOM    453  C   MET   119       8.390   7.683   4.642  1.00  0.00
ATOM    454  N   PHE   120       7.477   7.539   3.692  1.00  0.00
ATOM    455  CA  PHE   120       7.239   6.282   2.978  1.00  0.00
ATOM    456  CB  PHE   120       6.038   6.417   2.040  1.00  0.00
ATOM    457  CG  PHE   120       5.744   5.175   1.249  1.00  0.00
ATOM    458  CD1 PHE   120       5.085   4.106   1.832  1.00  0.00
ATOM    459  CD2 PHE   120       6.126   5.073  -0.077  1.00  0.00
ATOM    460  CE1 PHE   120       4.814   2.962   1.105  1.00  0.00
ATOM    461  CE2 PHE   120       5.855   3.930  -0.804  1.00  0.00
ATOM    462  CZ  PHE   120       5.202   2.877  -0.220  1.00  0.00
ATOM    463  O   PHE   120       9.099   4.953   2.349  1.00  0.00
ATOM    464  C   PHE   120       8.506   6.001   2.190  1.00  0.00
ATOM    465  N   LEU   121       8.940   6.976   1.402  1.00  0.00
ATOM    466  CA  LEU   121      10.164   6.916   0.622  1.00  0.00
ATOM    467  CB  LEU   121      10.438   8.264  -0.050  1.00  0.00
ATOM    468  CG  LEU   121       9.389   8.745  -1.055  1.00  0.00
ATOM    469  CD1 LEU   121       9.717  10.148  -1.544  1.00  0.00
ATOM    470  CD2 LEU   121       9.338   7.821  -2.262  1.00  0.00
ATOM    471  O   LEU   121      12.251   5.802   1.024  1.00  0.00
ATOM    472  C   LEU   121      11.404   6.579   1.441  1.00  0.00
TER
END



