
PFRMAT TS
TARGET T0309
AUTHOR SAM_T06_server
REMARK   6 
REMARK   6 T0309 model 3 Thu Jun  1 13:24:45 2006
METHOD The SAM-T06 server uses methods similar to SAM_T04 in CASP6 and
METHOD the SAM-T02 method in CASP5.
METHOD 
METHOD We start with a fully automated method:
METHOD    
METHOD     Use the SAM-T2K and SAM-T04 methods for finding homologs of the
METHOD       target and aligning them.
METHOD 
METHOD     Make local structure predictions using neural nets and the
METHOD       multiple alignments.  Different neural nets are used for the
METHOD       SAM-T2K alignments and the SAM-T04 alignments.
METHOD       We currently use 8 local-structure alphabets: 
METHOD 	DSSP
METHOD 	STRIDE
METHOD 	STR2	an extended version of DSSP that splits the beta strands
METHOD 		into multiple classes (parallel/antiparallel/mixed,
METHOD 					edge/center)
METHOD 	ALPHA	an discretization of the alpha torsion angle:
METHOD 		CA(i-i), CA(i), CA(i+1), CA(i+2)
METHOD 	BYS	a discretization of Ramachandran plots, due to Bystroff
METHOD 	CB_burial_14_7	a 7-state discretization of the number of C_beta
METHOD 		atoms in a 14 Angstrom radius sphere around the C_beta.
METHOD 	near-backbone-11 an 11-state discretization of the number of
METHOD 	      residues (represented by near-backbone points) in a 
METHOD 	      9.65 Angstrom radius sphere around the sidechain proxy
METHOD 	      spot for the residue.
METHOD 	DSSP_EHL2	CASP's collapse of the DSSP alphabet
METHOD 			DSSP_EHL2 is not predicted directly by a
METHOD 			neural net, but is computed as a weighted
METHOD 			average of the other backbone alphabet predictions. 
METHOD     
METHOD     We make 2-track HMMs with each alphabet (1.0 amino acid + 0.3 local structure)
METHOD       and use them to score a template library of 6400 (t04) or 9900 (t2k) templates
METHOD       We also used a single-track HMM to score not just the template
METHOD       library, but a non-redundant copy of the entire PDB.
METHOD 
METHOD     We also made a few 3-track HMMs (AA, str2, CB_burial_14_7 and 
METHOD       AA, str2, near-backbone-11) for finding and aligning more remote
METHOD       homologs.
METHOD     
METHOD     One-track HMMs built from the template library multiple alignments
METHOD        were used to score the target sequence (for early targets, only
METHOD        t2k template library was searched this way).
METHOD 
METHOD     All the logs of e-values were combined in a weighted average (with
METHOD        rather arbitrary weights, since we did not have time to
METHOD        optimize them), and the best templates ranked.  Ranking was
METHOD        separate for predictions from the t2k and t04 multiple alignments.
METHOD     
METHOD     Alignments of the target to the top templates were made using
METHOD       several different alignment methods (mainly using the SAM hmmscore
METHOD       program, but a few alignments were made with Bob Edgar's MUSCLE
METHOD       profile-profile aligner).
METHOD 
METHOD     Generate fragments (short 9-residue alignments for each position)
METHOD       using SAM's "fragfinder" program and the 3-track HMM.
METHOD 
METHOD     Then the "undertaker" program (named because it optimizes burial)
METHOD       is used to try to combine the alignments and the fragments into
METHOD       a consistent 3D model.  No single alignment or parent template
METHOD       was used, though in many cases one had much more influence than
METHOD       the others.  The alignment scores were not passed to undertaker,
METHOD       but were used only to pick the set of alignments and fragments
METHOD       that undertaker would see.  Helix and strand constraints
METHOD       generated from the secondary-structure predictions are passed to
METHOD       undertaker to use in the cost function.
METHOD 
METHOD     One important change in this server over previous methods is that
METHOD     sheet constraints are extracted from the top few alignments and
METHOD     passed to undertaker. 
METHOD -------------
MODEL  3
PARENT N/A
ATOM      1  N   MET     1      23.379  -9.826  -2.937  1.00  0.00
ATOM      2  CA  MET     1      22.721 -11.165  -2.921  1.00  0.00
ATOM      3  CB  MET     1      23.172 -11.969  -1.700  1.00  0.00
ATOM      4  CG  MET     1      24.646 -12.342  -1.712  1.00  0.00
ATOM      5  SD  MET     1      25.085 -13.395  -3.108  1.00  0.00
ATOM      6  CE  MET     1      24.252 -14.916  -2.659  1.00  0.00
ATOM      7  O   MET     1      20.576 -10.649  -3.877  1.00  0.00
ATOM      8  C   MET     1      21.195 -10.986  -2.865  1.00  0.00
ATOM      9  N   ALA     2      20.584 -11.226  -1.702  1.00  0.00
ATOM     10  CA  ALA     2      19.141 -11.042  -1.566  1.00  0.00
ATOM     11  CB  ALA     2      18.606 -11.882  -0.416  1.00  0.00
ATOM     12  O   ALA     2      19.520  -8.951  -0.439  1.00  0.00
ATOM     13  C   ALA     2      18.872  -9.563  -1.290  1.00  0.00
ATOM     14  N   SER     3      17.918  -8.993  -2.018  1.00  0.00
ATOM     15  CA  SER     3      17.566  -7.587  -1.854  1.00  0.00
ATOM     16  CB  SER     3      16.954  -7.035  -3.143  1.00  0.00
ATOM     17  OG  SER     3      16.498  -5.706  -2.962  1.00  0.00
ATOM     18  O   SER     3      15.504  -8.111  -0.750  1.00  0.00
ATOM     19  C   SER     3      16.552  -7.470  -0.717  1.00  0.00
ATOM     20  N   LYS     4      16.871  -6.672   0.297  1.00  0.00
ATOM     21  CA  LYS     4      15.966  -6.496   1.430  1.00  0.00
ATOM     22  CB  LYS     4      16.739  -6.570   2.748  1.00  0.00
ATOM     23  CG  LYS     4      15.865  -6.456   3.986  1.00  0.00
ATOM     24  CD  LYS     4      16.697  -6.513   5.258  1.00  0.00
ATOM     25  CE  LYS     4      15.825  -6.379   6.495  1.00  0.00
ATOM     26  NZ  LYS     4      16.624  -6.458   7.749  1.00  0.00
ATOM     27  O   LYS     4      15.843  -4.107   1.241  1.00  0.00
ATOM     28  C   LYS     4      15.234  -5.159   1.425  1.00  0.00
ATOM     29  N   LYS     5      13.921  -5.216   1.635  1.00  0.00
ATOM     30  CA  LYS     5      13.071  -4.027   1.664  1.00  0.00
ATOM     31  CB  LYS     5      11.920  -4.167   0.665  1.00  0.00
ATOM     32  CG  LYS     5      11.025  -2.941   0.575  1.00  0.00
ATOM     33  CD  LYS     5       9.885  -3.161  -0.406  1.00  0.00
ATOM     34  CE  LYS     5       8.987  -1.938  -0.493  1.00  0.00
ATOM     35  NZ  LYS     5       7.881  -2.129  -1.472  1.00  0.00
ATOM     36  O   LYS     5      11.798  -4.684   3.599  1.00  0.00
ATOM     37  C   LYS     5      12.470  -3.810   3.048  1.00  0.00
ATOM     38  N   VAL     6      12.709  -2.638   3.613  1.00  0.00
ATOM     39  CA  VAL     6      12.170  -2.323   4.919  1.00  0.00
ATOM     40  CB  VAL     6      13.110  -1.393   5.708  1.00  0.00
ATOM     41  CG1 VAL     6      12.488  -1.017   7.045  1.00  0.00
ATOM     42  CG2 VAL     6      14.440  -2.081   5.973  1.00  0.00
ATOM     43  O   VAL     6      10.661  -0.641   4.080  1.00  0.00
ATOM     44  C   VAL     6      10.811  -1.616   4.819  1.00  0.00
ATOM     45  N   HIS     7       9.831  -2.127   5.560  1.00  0.00
ATOM     46  CA  HIS     7       8.478  -1.576   5.588  1.00  0.00
ATOM     47  CB  HIS     7       7.451  -2.688   5.807  1.00  0.00
ATOM     48  CG  HIS     7       7.475  -3.750   4.751  1.00  0.00
ATOM     49  CD2 HIS     7       8.023  -5.095   4.643  1.00  0.00
ATOM     50  ND1 HIS     7       6.884  -3.586   3.517  1.00  0.00
ATOM     51  CE1 HIS     7       7.071  -4.703   2.790  1.00  0.00
ATOM     52  NE2 HIS     7       7.753  -5.611   3.461  1.00  0.00
ATOM     53  O   HIS     7       8.477  -0.948   7.910  1.00  0.00
ATOM     54  C   HIS     7       8.414  -0.571   6.740  1.00  0.00
ATOM     55  N   GLN     8       8.282   0.708   6.404  1.00  0.00
ATOM     56  CA  GLN     8       8.252   1.764   7.402  1.00  0.00
ATOM     57  CB  GLN     8       9.287   2.842   7.072  1.00  0.00
ATOM     58  CG  GLN     8      10.713   2.326   6.980  1.00  0.00
ATOM     59  CD  GLN     8      11.224   1.784   8.301  1.00  0.00
ATOM     60  OE1 GLN     8      11.129   2.447   9.333  1.00  0.00
ATOM     61  NE2 GLN     8      11.765   0.573   8.271  1.00  0.00
ATOM     62  O   GLN     8       6.092   2.450   6.625  1.00  0.00
ATOM     63  C   GLN     8       6.919   2.481   7.528  1.00  0.00
ATOM     64  N   ILE     9       6.715   3.109   8.676  1.00  0.00
ATOM     65  CA  ILE     9       5.523   3.907   8.905  1.00  0.00
ATOM     66  CB  ILE     9       4.712   3.379  10.102  1.00  0.00
ATOM     67  CG1 ILE     9       4.280   1.931   9.857  1.00  0.00
ATOM     68  CG2 ILE     9       3.465   4.224  10.314  1.00  0.00
ATOM     69  CD1 ILE     9       3.630   1.277  11.056  1.00  0.00
ATOM     70  O   ILE     9       6.757   5.485  10.215  1.00  0.00
ATOM     71  C   ILE     9       6.135   5.272   9.165  1.00  0.00
ATOM     72  N   ASN    10       6.003   6.172   8.193  1.00  0.00
ATOM     73  CA  ASN    10       6.566   7.513   8.307  1.00  0.00
ATOM     74  CB  ASN    10       6.053   8.204   9.572  1.00  0.00
ATOM     75  CG  ASN    10       4.573   8.530   9.497  1.00  0.00
ATOM     76  ND2 ASN    10       3.925   8.593  10.653  1.00  0.00
ATOM     77  OD1 ASN    10       4.024   8.720   8.412  1.00  0.00
ATOM     78  O   ASN    10       8.643   6.373   8.007  1.00  0.00
ATOM     79  C   ASN    10       8.088   7.407   8.376  1.00  0.00
ATOM     80  N   VAL    11       8.784   8.434   8.843  1.00  0.00
ATOM     81  CA  VAL    11      10.236   8.319   8.839  1.00  0.00
ATOM     82  CB  VAL    11      10.897   9.530   8.157  1.00  0.00
ATOM     83  CG1 VAL    11      10.511   9.591   6.687  1.00  0.00
ATOM     84  CG2 VAL    11      10.453  10.825   8.823  1.00  0.00
ATOM     85  O   VAL    11      12.126   8.454  10.286  1.00  0.00
ATOM     86  C   VAL    11      10.927   8.224  10.172  1.00  0.00
ATOM     87  N   LYS    12      10.159   7.821  11.172  1.00  0.00
ATOM     88  CA  LYS    12      10.649   7.675  12.527  1.00  0.00
ATOM     89  CB  LYS    12       9.537   7.163  13.446  1.00  0.00
ATOM     90  CG  LYS    12       9.952   7.017  14.901  1.00  0.00
ATOM     91  CD  LYS    12       8.783   6.574  15.767  1.00  0.00
ATOM     92  CE  LYS    12       9.209   6.382  17.213  1.00  0.00
ATOM     93  NZ  LYS    12       8.080   5.925  18.069  1.00  0.00
ATOM     94  O   LYS    12      12.803   6.978  13.317  1.00  0.00
ATOM     95  C   LYS    12      11.813   6.692  12.650  1.00  0.00
ATOM     96  N   GLY    13      11.694   5.537  12.002  1.00  0.00
ATOM     97  CA  GLY    13      12.721   4.505  12.086  1.00  0.00
ATOM     98  O   GLY    13      14.460   3.524  10.779  1.00  0.00
ATOM     99  C   GLY    13      13.703   4.480  10.925  1.00  0.00
ATOM    100  N   PHE    14      13.714   5.530  10.115  1.00  0.00
ATOM    101  CA  PHE    14      14.611   5.565   8.966  1.00  0.00
ATOM    102  CB  PHE    14      14.116   6.577   7.930  1.00  0.00
ATOM    103  CG  PHE    14      12.878   6.140   7.200  1.00  0.00
ATOM    104  CD1 PHE    14      11.632   6.606   7.583  1.00  0.00
ATOM    105  CD2 PHE    14      12.960   5.266   6.131  1.00  0.00
ATOM    106  CE1 PHE    14      10.492   6.203   6.912  1.00  0.00
ATOM    107  CE2 PHE    14      11.820   4.865   5.460  1.00  0.00
ATOM    108  CZ  PHE    14      10.591   5.330   5.846  1.00  0.00
ATOM    109  O   PHE    14      16.960   5.621   8.510  1.00  0.00
ATOM    110  C   PHE    14      16.055   5.956   9.272  1.00  0.00
ATOM    111  N   PHE    15      16.274   6.641  10.389  1.00  0.00
ATOM    112  CA  PHE    15      17.614   7.094  10.745  1.00  0.00
ATOM    113  CB  PHE    15      17.583   7.887  12.053  1.00  0.00
ATOM    114  CG  PHE    15      17.001   9.264  11.913  1.00  0.00
ATOM    115  CD1 PHE    15      15.708   9.531  12.326  1.00  0.00
ATOM    116  CD2 PHE    15      17.750  10.294  11.367  1.00  0.00
ATOM    117  CE1 PHE    15      15.174  10.800  12.197  1.00  0.00
ATOM    118  CE2 PHE    15      17.215  11.563  11.239  1.00  0.00
ATOM    119  CZ  PHE    15      15.934  11.817  11.650  1.00  0.00
ATOM    120  O   PHE    15      19.849   6.273  10.943  1.00  0.00
ATOM    121  C   PHE    15      18.653   5.999  10.957  1.00  0.00
ATOM    122  N   ASP    16      18.215   4.756  11.128  1.00  0.00
ATOM    123  CA  ASP    16      19.170   3.672  11.339  1.00  0.00
ATOM    124  CB  ASP    16      18.678   2.732  12.441  1.00  0.00
ATOM    125  CG  ASP    16      17.374   2.048  12.085  1.00  0.00
ATOM    126  OD1 ASP    16      16.824   2.346  11.004  1.00  0.00
ATOM    127  OD2 ASP    16      16.902   1.216  12.887  1.00  0.00
ATOM    128  O   ASP    16      20.207   1.893  10.104  1.00  0.00
ATOM    129  C   ASP    16      19.396   2.820  10.091  1.00  0.00
ATOM    130  N   MET    17      18.687   3.130   9.011  1.00  0.00
ATOM    131  CA  MET    17      18.837   2.362   7.781  1.00  0.00
ATOM    132  CB  MET    17      17.740   2.734   6.781  1.00  0.00
ATOM    133  CG  MET    17      16.344   2.305   7.203  1.00  0.00
ATOM    134  SD  MET    17      15.076   2.800   6.021  1.00  0.00
ATOM    135  CE  MET    17      15.399   1.658   4.680  1.00  0.00
ATOM    136  O   MET    17      20.702   3.726   7.134  1.00  0.00
ATOM    137  C   MET    17      20.176   2.614   7.106  1.00  0.00
ATOM    138  N   ASP    18      20.718   1.563   6.494  1.00  0.00
ATOM    139  CA  ASP    18      21.995   1.639   5.797  1.00  0.00
ATOM    140  CB  ASP    18      23.101   0.990   6.631  1.00  0.00
ATOM    141  CG  ASP    18      24.473   1.150   6.006  1.00  0.00
ATOM    142  OD1 ASP    18      24.552   1.666   4.870  1.00  0.00
ATOM    143  OD2 ASP    18      25.469   0.760   6.651  1.00  0.00
ATOM    144  O   ASP    18      21.444  -0.242   4.415  1.00  0.00
ATOM    145  C   ASP    18      21.877   0.908   4.461  1.00  0.00
ATOM    146  N   VAL    19      22.268   1.575   3.378  1.00  0.00
ATOM    147  CA  VAL    19      22.181   0.993   2.040  1.00  0.00
ATOM    148  CB  VAL    19      22.696   1.969   0.966  1.00  0.00
ATOM    149  CG1 VAL    19      22.673   1.313  -0.405  1.00  0.00
ATOM    150  CG2 VAL    19      21.825   3.215   0.917  1.00  0.00
ATOM    151  O   VAL    19      22.819  -1.047   0.942  1.00  0.00
ATOM    152  C   VAL    19      22.999  -0.285   1.895  1.00  0.00
ATOM    153  N   MET    20      19.039   5.088  -0.947  1.00  0.00
ATOM    154  CA  MET    20      18.077   4.000  -0.863  1.00  0.00
ATOM    155  CB  MET    20      17.730   3.702   0.596  1.00  0.00
ATOM    156  CG  MET    20      16.847   2.479   0.787  1.00  0.00
ATOM    157  SD  MET    20      17.689   0.941   0.367  1.00  0.00
ATOM    158  CE  MET    20      18.857   0.812   1.718  1.00  0.00
ATOM    159  O   MET    20      16.322   5.511  -1.512  1.00  0.00
ATOM    160  C   MET    20      16.794   4.376  -1.603  1.00  0.00
ATOM    161  N   GLU    21      16.255   3.420  -2.356  1.00  0.00
ATOM    162  CA  GLU    21      15.039   3.631  -3.137  1.00  0.00
ATOM    163  CB  GLU    21      14.860   2.511  -4.164  1.00  0.00
ATOM    164  CG  GLU    21      15.901   2.511  -5.270  1.00  0.00
ATOM    165  CD  GLU    21      15.662   1.421  -6.297  1.00  0.00
ATOM    166  OE1 GLU    21      14.699   0.644  -6.124  1.00  0.00
ATOM    167  OE2 GLU    21      16.435   1.345  -7.274  1.00  0.00
ATOM    168  O   GLU    21      13.818   3.103  -1.145  1.00  0.00
ATOM    169  C   GLU    21      13.811   3.652  -2.246  1.00  0.00
ATOM    170  N   VAL    22      12.751   4.268  -2.757  1.00  0.00
ATOM    171  CA  VAL    22      11.502   4.414  -2.026  1.00  0.00
ATOM    172  CB  VAL    22      11.259   5.878  -1.612  1.00  0.00
ATOM    173  CG1 VAL    22       9.936   6.009  -0.873  1.00  0.00
ATOM    174  CG2 VAL    22      12.370   6.366  -0.697  1.00  0.00
ATOM    175  O   VAL    22       9.986   4.555  -3.852  1.00  0.00
ATOM    176  C   VAL    22      10.271   3.991  -2.808  1.00  0.00
ATOM    177  N   THR    23       9.537   3.013  -2.294  1.00  0.00
ATOM    178  CA  THR    23       8.311   2.548  -2.940  1.00  0.00
ATOM    179  CB  THR    23       8.247   1.009  -2.989  1.00  0.00
ATOM    180  CG2 THR    23       6.957   0.551  -3.649  1.00  0.00
ATOM    181  OG1 THR    23       9.358   0.505  -3.740  1.00  0.00
ATOM    182  O   THR    23       7.013   2.748  -0.931  1.00  0.00
ATOM    183  C   THR    23       7.159   3.102  -2.100  1.00  0.00
ATOM    184  N   GLU    24       6.350   3.978  -2.685  1.00  0.00
ATOM    185  CA  GLU    24       5.243   4.592  -1.957  1.00  0.00
ATOM    186  CB  GLU    24       4.950   5.990  -2.505  1.00  0.00
ATOM    187  CG  GLU    24       3.879   6.745  -1.735  1.00  0.00
ATOM    188  CD  GLU    24       4.339   7.162  -0.353  1.00  0.00
ATOM    189  OE1 GLU    24       5.550   7.042  -0.069  1.00  0.00
ATOM    190  OE2 GLU    24       3.491   7.607   0.447  1.00  0.00
ATOM    191  O   GLU    24       3.461   3.451  -3.107  1.00  0.00
ATOM    192  C   GLU    24       3.929   3.824  -2.028  1.00  0.00
ATOM    193  N   GLN    25       3.336   3.598  -0.860  1.00  0.00
ATOM    194  CA  GLN    25       2.064   2.894  -0.760  1.00  0.00
ATOM    195  CB  GLN    25       1.770   2.521   0.695  1.00  0.00
ATOM    196  CG  GLN    25       0.480   1.741   0.887  1.00  0.00
ATOM    197  CD  GLN    25       0.310   1.235   2.305  1.00  0.00
ATOM    198  OE1 GLN    25       1.178   1.440   3.156  1.00  0.00
ATOM    199  NE2 GLN    25      -0.810   0.572   2.567  1.00  0.00
ATOM    200  O   GLN    25       0.744   4.903  -0.874  1.00  0.00
ATOM    201  C   GLN    25       0.906   3.745  -1.265  1.00  0.00
ATOM    202  N   THR    26       0.107   3.159  -2.146  1.00  0.00
ATOM    203  CA  THR    26      -1.056   3.835  -2.693  1.00  0.00
ATOM    204  CB  THR    26      -0.990   3.919  -4.229  1.00  0.00
ATOM    205  CG2 THR    26      -2.153   4.738  -4.769  1.00  0.00
ATOM    206  OG1 THR    26       0.239   4.542  -4.625  1.00  0.00
ATOM    207  O   THR    26      -2.657   2.051  -2.936  1.00  0.00
ATOM    208  C   THR    26      -2.271   3.011  -2.263  1.00  0.00
ATOM    209  N   LYS    27      -2.853   3.385  -1.127  1.00  0.00
ATOM    210  CA  LYS    27      -4.025   2.714  -0.575  1.00  0.00
ATOM    211  CB  LYS    27      -3.602   1.561   0.337  1.00  0.00
ATOM    212  CG  LYS    27      -4.760   0.732   0.866  1.00  0.00
ATOM    213  CD  LYS    27      -4.265  -0.440   1.697  1.00  0.00
ATOM    214  CE  LYS    27      -5.422  -1.304   2.177  1.00  0.00
ATOM    215  NZ  LYS    27      -4.946  -2.499   2.928  1.00  0.00
ATOM    216  O   LYS    27      -4.288   4.284   1.216  1.00  0.00
ATOM    217  C   LYS    27      -4.784   3.780   0.214  1.00  0.00
ATOM    218  N   GLU    28      -6.004   4.125  -0.231  1.00  0.00
ATOM    219  CA  GLU    28      -6.899   5.132   0.356  1.00  0.00
ATOM    220  CB  GLU    28      -8.137   5.325  -0.520  1.00  0.00
ATOM    221  CG  GLU    28      -8.940   4.055  -0.748  1.00  0.00
ATOM    222  CD  GLU    28      -8.534   3.328  -2.016  1.00  0.00
ATOM    223  OE1 GLU    28      -7.321   3.099  -2.204  1.00  0.00
ATOM    224  OE2 GLU    28      -9.427   2.989  -2.818  1.00  0.00
ATOM    225  O   GLU    28      -7.991   5.728   2.404  1.00  0.00
ATOM    226  C   GLU    28      -7.443   4.840   1.754  1.00  0.00
ATOM    227  N   ALA    29      -7.298   3.599   2.203  1.00  0.00
ATOM    228  CA  ALA    29      -7.755   3.186   3.523  1.00  0.00
ATOM    229  CB  ALA    29      -9.244   3.453   3.677  1.00  0.00
ATOM    230  O   ALA    29      -7.014   0.998   2.861  1.00  0.00
ATOM    231  C   ALA    29      -7.512   1.699   3.745  1.00  0.00
ATOM    232  N   GLU    30      -7.859   1.225   4.932  1.00  0.00
ATOM    233  CA  GLU    30      -7.679  -0.180   5.241  1.00  0.00
ATOM    234  CB  GLU    30      -7.460  -0.375   6.742  1.00  0.00
ATOM    235  CG  GLU    30      -6.188   0.266   7.274  1.00  0.00
ATOM    236  CD  GLU    30      -5.962  -0.019   8.746  1.00  0.00
ATOM    237  OE1 GLU    30      -6.914   0.154   9.536  1.00  0.00
ATOM    238  OE2 GLU    30      -4.835  -0.414   9.107  1.00  0.00
ATOM    239  O   GLU    30      -9.851  -0.476   4.271  1.00  0.00
ATOM    240  C   GLU    30      -8.888  -0.998   4.836  1.00  0.00
ATOM    241  N   TYR    31      -8.840  -2.291   5.129  1.00  0.00
ATOM    242  CA  TYR    31      -9.940  -3.162   4.775  1.00  0.00
ATOM    243  CB  TYR    31     -11.270  -2.412   4.869  1.00  0.00
ATOM    244  CG  TYR    31     -11.624  -1.964   6.268  1.00  0.00
ATOM    245  CD1 TYR    31     -11.393  -0.657   6.677  1.00  0.00
ATOM    246  CD2 TYR    31     -12.186  -2.850   7.178  1.00  0.00
ATOM    247  CE1 TYR    31     -11.713  -0.238   7.955  1.00  0.00
ATOM    248  CE2 TYR    31     -12.514  -2.450   8.460  1.00  0.00
ATOM    249  CZ  TYR    31     -12.273  -1.132   8.844  1.00  0.00
ATOM    250  OH  TYR    31     -12.591  -0.718  10.117  1.00  0.00
ATOM    251  O   TYR    31      -8.658  -3.903   2.905  1.00  0.00
ATOM    252  C   TYR    31      -9.779  -3.675   3.359  1.00  0.00
ATOM    253  N   THR    32     -10.909  -3.847   2.679  1.00  0.00
ATOM    254  CA  THR    32     -11.005  -4.323   1.295  1.00  0.00
ATOM    255  CB  THR    32     -12.410  -4.083   0.711  1.00  0.00
ATOM    256  CG2 THR    32     -13.461  -4.805   1.541  1.00  0.00
ATOM    257  OG1 THR    32     -12.699  -2.680   0.715  1.00  0.00
ATOM    258  O   THR    32      -9.463  -2.664   0.541  1.00  0.00
ATOM    259  C   THR    32     -10.068  -3.695   0.291  1.00  0.00
ATOM    260  N   TYR    33     -10.014  -4.335  -0.876  1.00  0.00
ATOM    261  CA  TYR    33      -9.240  -3.866  -2.008  1.00  0.00
ATOM    262  CB  TYR    33      -8.207  -4.916  -2.423  1.00  0.00
ATOM    263  CG  TYR    33      -7.193  -5.236  -1.350  1.00  0.00
ATOM    264  CD1 TYR    33      -7.319  -6.379  -0.571  1.00  0.00
ATOM    265  CD2 TYR    33      -6.115  -4.394  -1.116  1.00  0.00
ATOM    266  CE1 TYR    33      -6.397  -6.681   0.413  1.00  0.00
ATOM    267  CE2 TYR    33      -5.182  -4.680  -0.136  1.00  0.00
ATOM    268  CZ  TYR    33      -5.332  -5.834   0.630  1.00  0.00
ATOM    269  OH  TYR    33      -4.412  -6.132   1.610  1.00  0.00
ATOM    270  O   TYR    33      -9.888  -3.542  -4.311  1.00  0.00
ATOM    271  C   TYR    33     -10.250  -3.620  -3.138  1.00  0.00
ATOM    272  N   ASP    34     -11.524  -3.508  -2.770  1.00  0.00
ATOM    273  CA  ASP    34     -12.583  -3.246  -3.744  1.00  0.00
ATOM    274  CB  ASP    34     -13.786  -4.156  -3.484  1.00  0.00
ATOM    275  CG  ASP    34     -14.902  -3.945  -4.488  1.00  0.00
ATOM    276  OD1 ASP    34     -14.786  -3.023  -5.320  1.00  0.00
ATOM    277  OD2 ASP    34     -15.893  -4.705  -4.441  1.00  0.00
ATOM    278  O   ASP    34     -13.718  -1.448  -2.639  1.00  0.00
ATOM    279  C   ASP    34     -12.931  -1.784  -3.529  1.00  0.00
ATOM    280  N   PHE    35     -12.337  -0.915  -4.340  1.00  0.00
ATOM    281  CA  PHE    35     -12.541   0.518  -4.197  1.00  0.00
ATOM    282  CB  PHE    35     -11.272   1.281  -4.581  1.00  0.00
ATOM    283  CG  PHE    35     -10.136   1.095  -3.615  1.00  0.00
ATOM    284  CD1 PHE    35      -9.132   0.177  -3.873  1.00  0.00
ATOM    285  CD2 PHE    35     -10.073   1.836  -2.449  1.00  0.00
ATOM    286  CE1 PHE    35      -8.088   0.006  -2.985  1.00  0.00
ATOM    287  CE2 PHE    35      -9.028   1.665  -1.560  1.00  0.00
ATOM    288  CZ  PHE    35      -8.039   0.754  -1.825  1.00  0.00
ATOM    289  O   PHE    35     -13.860   0.737  -6.186  1.00  0.00
ATOM    290  C   PHE    35     -13.646   1.125  -5.039  1.00  0.00
ATOM    291  N   LYS    36     -14.341   2.096  -4.453  1.00  0.00
ATOM    292  CA  LYS    36     -15.405   2.793  -5.151  1.00  0.00
ATOM    293  CB  LYS    36     -16.417   3.362  -4.154  1.00  0.00
ATOM    294  CG  LYS    36     -17.183   2.304  -3.376  1.00  0.00
ATOM    295  CD  LYS    36     -18.227   2.934  -2.468  1.00  0.00
ATOM    296  CE  LYS    36     -18.948   1.882  -1.643  1.00  0.00
ATOM    297  NZ  LYS    36     -19.974   2.485  -0.749  1.00  0.00
ATOM    298  O   LYS    36     -13.575   4.218  -5.821  1.00  0.00
ATOM    299  C   LYS    36     -14.773   3.935  -5.955  1.00  0.00
ATOM    300  N   GLU    37     -15.574   4.583  -6.789  1.00  0.00
ATOM    301  CA  GLU    37     -15.088   5.674  -7.636  1.00  0.00
ATOM    302  CB  GLU    37     -16.258   6.373  -8.333  1.00  0.00
ATOM    303  CG  GLU    37     -15.842   7.506  -9.257  1.00  0.00
ATOM    304  CD  GLU    37     -17.022   8.146  -9.960  1.00  0.00
ATOM    305  OE1 GLU    37     -18.163   7.682  -9.751  1.00  0.00
ATOM    306  OE2 GLU    37     -16.807   9.114 -10.721  1.00  0.00
ATOM    307  O   GLU    37     -13.245   7.185  -7.324  1.00  0.00
ATOM    308  C   GLU    37     -14.319   6.768  -6.892  1.00  0.00
ATOM    309  N   ILE    38     -14.864   7.221  -5.769  1.00  0.00
ATOM    310  CA  ILE    38     -14.234   8.280  -4.993  1.00  0.00
ATOM    311  CB  ILE    38     -15.087   8.669  -3.771  1.00  0.00
ATOM    312  CG1 ILE    38     -16.385   9.342  -4.220  1.00  0.00
ATOM    313  CG2 ILE    38     -14.326   9.635  -2.876  1.00  0.00
ATOM    314  CD1 ILE    38     -17.397   9.517  -3.108  1.00  0.00
ATOM    315  O   ILE    38     -11.896   8.628  -4.486  1.00  0.00
ATOM    316  C   ILE    38     -12.854   7.845  -4.475  1.00  0.00
ATOM    317  N   LEU    39     -12.751   6.597  -4.035  1.00  0.00
ATOM    318  CA  LEU    39     -11.488   6.071  -3.541  1.00  0.00
ATOM    319  CB  LEU    39     -11.690   4.687  -2.919  1.00  0.00
ATOM    320  CG  LEU    39     -12.501   4.639  -1.623  1.00  0.00
ATOM    321  CD1 LEU    39     -12.755   3.201  -1.200  1.00  0.00
ATOM    322  CD2 LEU    39     -11.755   5.340  -0.497  1.00  0.00
ATOM    323  O   LEU    39      -9.279   6.119  -4.478  1.00  0.00
ATOM    324  C   LEU    39     -10.478   5.944  -4.682  1.00  0.00
ATOM    325  N   SER    40     -10.961   5.638  -5.883  1.00  0.00
ATOM    326  CA  SER    40     -10.073   5.536  -7.034  1.00  0.00
ATOM    327  CB  SER    40     -10.811   4.921  -8.225  1.00  0.00
ATOM    328  OG  SER    40     -11.183   3.581  -7.958  1.00  0.00
ATOM    329  O   SER    40      -8.474   7.125  -7.873  1.00  0.00
ATOM    330  C   SER    40      -9.596   6.947  -7.394  1.00  0.00
ATOM    331  N   GLU    41     -10.447   7.946  -7.157  1.00  0.00
ATOM    332  CA  GLU    41     -10.092   9.341  -7.438  1.00  0.00
ATOM    333  CB  GLU    41     -11.309  10.250  -7.258  1.00  0.00
ATOM    334  CG  GLU    41     -12.383  10.066  -8.318  1.00  0.00
ATOM    335  CD  GLU    41     -13.624  10.893  -8.040  1.00  0.00
ATOM    336  OE1 GLU    41     -13.674  11.550  -6.980  1.00  0.00
ATOM    337  OE2 GLU    41     -14.548  10.880  -8.881  1.00  0.00
ATOM    338  O   GLU    41      -8.097  10.529  -6.811  1.00  0.00
ATOM    339  C   GLU    41      -8.989   9.764  -6.465  1.00  0.00
ATOM    340  N   PHE    42      -9.064   9.252  -5.241  1.00  0.00
ATOM    341  CA  PHE    42      -8.075   9.554  -4.220  1.00  0.00
ATOM    342  CB  PHE    42      -8.495   8.956  -2.875  1.00  0.00
ATOM    343  CG  PHE    42      -7.509   9.202  -1.768  1.00  0.00
ATOM    344  CD1 PHE    42      -7.456  10.429  -1.129  1.00  0.00
ATOM    345  CD2 PHE    42      -6.637   8.208  -1.363  1.00  0.00
ATOM    346  CE1 PHE    42      -6.550  10.656  -0.112  1.00  0.00
ATOM    347  CE2 PHE    42      -5.731   8.434  -0.346  1.00  0.00
ATOM    348  CZ  PHE    42      -5.686   9.653   0.280  1.00  0.00
ATOM    349  O   PHE    42      -5.693   9.641  -4.595  1.00  0.00
ATOM    350  C   PHE    42      -6.725   8.962  -4.629  1.00  0.00
ATOM    351  N   ASN    43      -6.746   7.693  -5.027  1.00  0.00
ATOM    352  CA  ASN    43      -5.535   6.998  -5.439  1.00  0.00
ATOM    353  CB  ASN    43      -5.850   5.548  -5.816  1.00  0.00
ATOM    354  CG  ASN    43      -6.150   4.685  -4.607  1.00  0.00
ATOM    355  ND2 ASN    43      -6.818   3.561  -4.837  1.00  0.00
ATOM    356  OD1 ASN    43      -5.788   5.028  -3.482  1.00  0.00
ATOM    357  O   ASN    43      -3.642   7.731  -6.709  1.00  0.00
ATOM    358  C   ASN    43      -4.869   7.649  -6.652  1.00  0.00
ATOM    359  N   GLY    44      -5.661   8.112  -7.615  1.00  0.00
ATOM    360  CA  GLY    44      -5.079   8.757  -8.787  1.00  0.00
ATOM    361  O   GLY    44      -3.282  10.333  -8.803  1.00  0.00
ATOM    362  C   GLY    44      -4.374  10.029  -8.340  1.00  0.00
ATOM    363  N   LYS    45      -5.000  10.763  -7.424  1.00  0.00
ATOM    364  CA  LYS    45      -4.419  12.002  -6.918  1.00  0.00
ATOM    365  CB  LYS    45      -5.398  12.708  -5.977  1.00  0.00
ATOM    366  CG  LYS    45      -4.893  14.036  -5.438  1.00  0.00
ATOM    367  CD  LYS    45      -5.946  14.720  -4.580  1.00  0.00
ATOM    368  CE  LYS    45      -5.430  16.032  -4.013  1.00  0.00
ATOM    369  NZ  LYS    45      -6.430  16.687  -3.127  1.00  0.00
ATOM    370  O   LYS    45      -2.126  12.394  -6.336  1.00  0.00
ATOM    371  C   LYS    45      -3.133  11.717  -6.151  1.00  0.00
ATOM    372  N   ASN    46      -3.163  10.710  -5.287  1.00  0.00
ATOM    373  CA  ASN    46      -1.974  10.387  -4.513  1.00  0.00
ATOM    374  CB  ASN    46      -2.281   9.291  -3.490  1.00  0.00
ATOM    375  CG  ASN    46      -3.126   9.791  -2.336  1.00  0.00
ATOM    376  ND2 ASN    46      -3.790   8.871  -1.648  1.00  0.00
ATOM    377  OD1 ASN    46      -3.179  10.991  -2.067  1.00  0.00
ATOM    378  O   ASN    46       0.340  10.073  -5.057  1.00  0.00
ATOM    379  C   ASN    46      -0.834   9.890  -5.392  1.00  0.00
ATOM    380  N   VAL    47      -1.174   9.284  -6.528  1.00  0.00
ATOM    381  CA  VAL    47      -0.160   8.802  -7.457  1.00  0.00
ATOM    382  CB  VAL    47      -0.776   7.911  -8.551  1.00  0.00
ATOM    383  CG1 VAL    47       0.262   7.576  -9.612  1.00  0.00
ATOM    384  CG2 VAL    47      -1.289   6.609  -7.953  1.00  0.00
ATOM    385  O   VAL    47       1.735   9.981  -8.274  1.00  0.00
ATOM    386  C   VAL    47       0.522   9.977  -8.129  1.00  0.00
ATOM    387  N   SER    48      -0.254  10.979  -8.533  1.00  0.00
ATOM    388  CA  SER    48       0.309  12.160  -9.189  1.00  0.00
ATOM    389  CB  SER    48      -0.798  13.159  -9.533  1.00  0.00
ATOM    390  OG  SER    48      -1.679  12.630 -10.510  1.00  0.00
ATOM    391  O   SER    48       2.383  13.267  -8.717  1.00  0.00
ATOM    392  C   SER    48       1.317  12.855  -8.277  1.00  0.00
ATOM    393  N   ILE    49       0.966  12.987  -7.002  1.00  0.00
ATOM    394  CA  ILE    49       1.851  13.613  -6.036  1.00  0.00
ATOM    395  CB  ILE    49       1.153  13.810  -4.678  1.00  0.00
ATOM    396  CG1 ILE    49       0.033  14.844  -4.798  1.00  0.00
ATOM    397  CG2 ILE    49       2.148  14.295  -3.634  1.00  0.00
ATOM    398  CD1 ILE    49      -0.872  14.907  -3.586  1.00  0.00
ATOM    399  O   ILE    49       4.211  13.236  -5.797  1.00  0.00
ATOM    400  C   ILE    49       3.091  12.737  -5.814  1.00  0.00
ATOM    401  N   THR    50       2.894  11.431  -5.666  1.00  0.00
ATOM    402  CA  THR    50       4.022  10.529  -5.446  1.00  0.00
ATOM    403  CB  THR    50       3.568   9.059  -5.394  1.00  0.00
ATOM    404  CG2 THR    50       4.763   8.138  -5.203  1.00  0.00
ATOM    405  OG1 THR    50       2.661   8.875  -4.299  1.00  0.00
ATOM    406  O   THR    50       6.260  10.655  -6.296  1.00  0.00
ATOM    407  C   THR    50       5.055  10.647  -6.559  1.00  0.00
ATOM    408  N   VAL    51       4.598  10.735  -7.804  1.00  0.00
ATOM    409  CA  VAL    51       5.532  10.859  -8.915  1.00  0.00
ATOM    410  CB  VAL    51       4.826  10.665 -10.270  1.00  0.00
ATOM    411  CG1 VAL    51       5.776  10.984 -11.415  1.00  0.00
ATOM    412  CG2 VAL    51       4.354   9.228 -10.424  1.00  0.00
ATOM    413  O   VAL    51       7.407  12.325  -9.182  1.00  0.00
ATOM    414  C   VAL    51       6.204  12.232  -8.952  1.00  0.00
ATOM    415  N   LYS    52       5.451  13.299  -8.714  1.00  0.00
ATOM    416  CA  LYS    52       6.055  14.628  -8.750  1.00  0.00
ATOM    417  CB  LYS    52       4.983  15.708  -8.589  1.00  0.00
ATOM    418  CG  LYS    52       4.033  15.820  -9.770  1.00  0.00
ATOM    419  CD  LYS    52       2.976  16.887  -9.531  1.00  0.00
ATOM    420  CE  LYS    52       2.048  17.023 -10.725  1.00  0.00
ATOM    421  NZ  LYS    52       0.999  18.056 -10.498  1.00  0.00
ATOM    422  O   LYS    52       7.942  15.639  -7.690  1.00  0.00
ATOM    423  C   LYS    52       7.072  14.784  -7.621  1.00  0.00
ATOM    424  N   GLU    53       6.958  13.952  -6.589  1.00  0.00
ATOM    425  CA  GLU    53       7.878  13.986  -5.456  1.00  0.00
ATOM    426  CB  GLU    53       7.158  13.581  -4.169  1.00  0.00
ATOM    427  CG  GLU    53       6.082  14.558  -3.726  1.00  0.00
ATOM    428  CD  GLU    53       5.365  14.104  -2.469  1.00  0.00
ATOM    429  OE1 GLU    53       5.739  13.046  -1.920  1.00  0.00
ATOM    430  OE2 GLU    53       4.428  14.806  -2.034  1.00  0.00
ATOM    431  O   GLU    53       9.791  12.729  -4.707  1.00  0.00
ATOM    432  C   GLU    53       9.058  13.031  -5.651  1.00  0.00
ATOM    433  N   GLU    54       9.207  12.545  -6.885  1.00  0.00
ATOM    434  CA  GLU    54      10.298  11.660  -7.279  1.00  0.00
ATOM    435  CB  GLU    54      11.650  12.301  -6.962  1.00  0.00
ATOM    436  CG  GLU    54      11.912  13.598  -7.713  1.00  0.00
ATOM    437  CD  GLU    54      13.273  14.188  -7.396  1.00  0.00
ATOM    438  OE1 GLU    54      13.986  13.616  -6.546  1.00  0.00
ATOM    439  OE2 GLU    54      13.625  15.224  -8.000  1.00  0.00
ATOM    440  O   GLU    54      11.433   9.762  -6.354  1.00  0.00
ATOM    441  C   GLU    54      10.348  10.287  -6.616  1.00  0.00
ATOM    442  N   ASN    55       9.186   9.698  -6.345  1.00  0.00
ATOM    443  CA  ASN    55       9.161   8.370  -5.748  1.00  0.00
ATOM    444  CB  ASN    55       7.731   7.983  -5.362  1.00  0.00
ATOM    445  CG  ASN    55       7.214   8.772  -4.176  1.00  0.00
ATOM    446  ND2 ASN    55       5.895   8.831  -4.035  1.00  0.00
ATOM    447  OD1 ASN    55       7.993   9.321  -3.397  1.00  0.00
ATOM    448  O   ASN    55       9.552   7.584  -7.993  1.00  0.00
ATOM    449  C   ASN    55       9.706   7.383  -6.784  1.00  0.00
ATOM    450  N   GLU    56      10.343   6.321  -6.307  1.00  0.00
ATOM    451  CA  GLU    56      10.932   5.322  -7.190  1.00  0.00
ATOM    452  CB  GLU    56      12.105   4.622  -6.499  1.00  0.00
ATOM    453  CG  GLU    56      13.294   5.527  -6.223  1.00  0.00
ATOM    454  CD  GLU    56      13.884   6.113  -7.490  1.00  0.00
ATOM    455  OE1 GLU    56      14.197   5.336  -8.416  1.00  0.00
ATOM    456  OE2 GLU    56      14.036   7.351  -7.557  1.00  0.00
ATOM    457  O   GLU    56      10.146   3.625  -8.679  1.00  0.00
ATOM    458  C   GLU    56       9.968   4.230  -7.618  1.00  0.00
ATOM    459  N   LEU    57       8.946   3.983  -6.807  1.00  0.00
ATOM    460  CA  LEU    57       7.971   2.955  -7.134  1.00  0.00
ATOM    461  CB  LEU    57       8.472   1.579  -6.691  1.00  0.00
ATOM    462  CG  LEU    57       7.564   0.391  -7.015  1.00  0.00
ATOM    463  CD1 LEU    57       7.474   0.177  -8.519  1.00  0.00
ATOM    464  CD2 LEU    57       8.102  -0.884  -6.384  1.00  0.00
ATOM    465  O   LEU    57       6.571   3.919  -5.443  1.00  0.00
ATOM    466  C   LEU    57       6.638   3.211  -6.445  1.00  0.00
ATOM    467  N   PRO    58       5.578   2.624  -6.993  1.00  0.00
ATOM    468  CA  PRO    58       4.245   2.765  -6.435  1.00  0.00
ATOM    469  CB  PRO    58       3.439   3.415  -7.561  1.00  0.00
ATOM    470  CG  PRO    58       4.112   2.959  -8.812  1.00  0.00
ATOM    471  CD  PRO    58       5.573   2.838  -8.480  1.00  0.00
ATOM    472  O   PRO    58       3.873   0.430  -6.843  1.00  0.00
ATOM    473  C   PRO    58       3.726   1.376  -6.069  1.00  0.00
ATOM    474  N   VAL    59       3.126   1.261  -4.885  1.00  0.00
ATOM    475  CA  VAL    59       2.598  -0.007  -4.391  1.00  0.00
ATOM    476  CB  VAL    59       3.175  -0.358  -3.008  1.00  0.00
ATOM    477  CG1 VAL    59       2.581  -1.663  -2.498  1.00  0.00
ATOM    478  CG2 VAL    59       4.686  -0.515  -3.085  1.00  0.00
ATOM    479  O   VAL    59       0.559   0.907  -3.504  1.00  0.00
ATOM    480  C   VAL    59       1.077   0.093  -4.274  1.00  0.00
ATOM    481  N   LYS    60       0.358  -0.726  -5.038  1.00  0.00
ATOM    482  CA  LYS    60      -1.098  -0.692  -4.993  1.00  0.00
ATOM    483  CB  LYS    60      -1.646   0.255  -6.063  1.00  0.00
ATOM    484  CG  LYS    60      -1.371  -0.194  -7.488  1.00  0.00
ATOM    485  CD  LYS    60      -1.925   0.800  -8.496  1.00  0.00
ATOM    486  CE  LYS    60      -1.620   0.369  -9.921  1.00  0.00
ATOM    487  NZ  LYS    60      -2.229   1.286 -10.923  1.00  0.00
ATOM    488  O   LYS    60      -0.982  -3.026  -5.562  1.00  0.00
ATOM    489  C   LYS    60      -1.695  -2.075  -5.240  1.00  0.00
ATOM    490  N   GLY    61      -3.009  -2.183  -5.090  1.00  0.00
ATOM    491  CA  GLY    61      -3.662  -3.460  -5.317  1.00  0.00
ATOM    492  O   GLY    61      -5.745  -2.810  -4.361  1.00  0.00
ATOM    493  C   GLY    61      -5.158  -3.275  -5.338  1.00  0.00
ATOM    494  N   VAL    62      -5.779  -3.629  -6.456  1.00  0.00
ATOM    495  CA  VAL    62      -7.218  -3.488  -6.596  1.00  0.00
ATOM    496  CB  VAL    62      -7.583  -2.438  -7.661  1.00  0.00
ATOM    497  CG1 VAL    62      -7.266  -1.037  -7.157  1.00  0.00
ATOM    498  CG2 VAL    62      -6.793  -2.678  -8.938  1.00  0.00
ATOM    499  O   VAL    62      -7.391  -5.451  -7.969  1.00  0.00
ATOM    500  C   VAL    62      -7.838  -4.821  -7.011  1.00  0.00
TER
END



