
PFRMAT TS
TARGET T0311
AUTHOR SAM_T06_server
REMARK   6 
REMARK   6 T0311 model 3 Thu Jun  1 13:31:52 2006
METHOD The SAM-T06 server uses methods similar to SAM_T04 in CASP6 and
METHOD the SAM-T02 method in CASP5.
METHOD 
METHOD We start with a fully automated method:
METHOD    
METHOD     Use the SAM-T2K and SAM-T04 methods for finding homologs of the
METHOD       target and aligning them.
METHOD 
METHOD     Make local structure predictions using neural nets and the
METHOD       multiple alignments.  Different neural nets are used for the
METHOD       SAM-T2K alignments and the SAM-T04 alignments.
METHOD       We currently use 8 local-structure alphabets: 
METHOD 	DSSP
METHOD 	STRIDE
METHOD 	STR2	an extended version of DSSP that splits the beta strands
METHOD 		into multiple classes (parallel/antiparallel/mixed,
METHOD 					edge/center)
METHOD 	ALPHA	an discretization of the alpha torsion angle:
METHOD 		CA(i-i), CA(i), CA(i+1), CA(i+2)
METHOD 	BYS	a discretization of Ramachandran plots, due to Bystroff
METHOD 	CB_burial_14_7	a 7-state discretization of the number of C_beta
METHOD 		atoms in a 14 Angstrom radius sphere around the C_beta.
METHOD 	near-backbone-11 an 11-state discretization of the number of
METHOD 	      residues (represented by near-backbone points) in a 
METHOD 	      9.65 Angstrom radius sphere around the sidechain proxy
METHOD 	      spot for the residue.
METHOD 	DSSP_EHL2	CASP's collapse of the DSSP alphabet
METHOD 			DSSP_EHL2 is not predicted directly by a
METHOD 			neural net, but is computed as a weighted
METHOD 			average of the other backbone alphabet predictions. 
METHOD     
METHOD     We make 2-track HMMs with each alphabet (1.0 amino acid + 0.3 local structure)
METHOD       and use them to score a template library of 6400 (t04) or 9900 (t2k) templates
METHOD       We also used a single-track HMM to score not just the template
METHOD       library, but a non-redundant copy of the entire PDB.
METHOD 
METHOD     We also made a few 3-track HMMs (AA, str2, CB_burial_14_7 and 
METHOD       AA, str2, near-backbone-11) for finding and aligning more remote
METHOD       homologs.
METHOD     
METHOD     One-track HMMs built from the template library multiple alignments
METHOD        were used to score the target sequence (for early targets, only
METHOD        t2k template library was searched this way).
METHOD 
METHOD     All the logs of e-values were combined in a weighted average (with
METHOD        rather arbitrary weights, since we did not have time to
METHOD        optimize them), and the best templates ranked.  Ranking was
METHOD        separate for predictions from the t2k and t04 multiple alignments.
METHOD     
METHOD     Alignments of the target to the top templates were made using
METHOD       several different alignment methods (mainly using the SAM hmmscore
METHOD       program, but a few alignments were made with Bob Edgar's MUSCLE
METHOD       profile-profile aligner).
METHOD 
METHOD     Generate fragments (short 9-residue alignments for each position)
METHOD       using SAM's "fragfinder" program and the 3-track HMM.
METHOD 
METHOD     Then the "undertaker" program (named because it optimizes burial)
METHOD       is used to try to combine the alignments and the fragments into
METHOD       a consistent 3D model.  No single alignment or parent template
METHOD       was used, though in many cases one had much more influence than
METHOD       the others.  The alignment scores were not passed to undertaker,
METHOD       but were used only to pick the set of alignments and fragments
METHOD       that undertaker would see.  Helix and strand constraints
METHOD       generated from the secondary-structure predictions are passed to
METHOD       undertaker to use in the cost function.
METHOD 
METHOD     One important change in this server over previous methods is that
METHOD     sheet constraints are extracted from the top few alignments and
METHOD     passed to undertaker. 
METHOD -------------
MODEL  3
PARENT N/A
ATOM      2  N   ILE    13      -0.374   4.670  -1.068  1.00  0.00
ATOM      3  CA  ILE    13       0.878   5.283  -0.635  1.00  0.00
ATOM      4  CB  ILE    13       1.902   4.224  -0.187  1.00  0.00
ATOM      5  CG1 ILE    13       1.429   3.536   1.095  1.00  0.00
ATOM      6  CG2 ILE    13       3.254   4.868   0.082  1.00  0.00
ATOM      7  CD1 ILE    13       2.230   2.304   1.457  1.00  0.00
ATOM      8  O   ILE    13       1.976   7.197  -1.516  1.00  0.00
ATOM      9  C   ILE    13       1.537   6.100  -1.760  1.00  0.00
ATOM     10  N   GLN    14       1.636   5.540  -2.965  1.00  0.00
ATOM     11  CA  GLN    14       2.241   6.250  -4.094  1.00  0.00
ATOM     12  CB  GLN    14       2.049   5.460  -5.390  1.00  0.00
ATOM     13  CG  GLN    14       2.688   6.103  -6.610  1.00  0.00
ATOM     14  CD  GLN    14       2.495   5.281  -7.869  1.00  0.00
ATOM     15  OE1 GLN    14       1.809   4.259  -7.856  1.00  0.00
ATOM     16  NE2 GLN    14       3.102   5.726  -8.963  1.00  0.00
ATOM     17  O   GLN    14       2.318   8.632  -4.328  1.00  0.00
ATOM     18  C   GLN    14       1.609   7.631  -4.282  1.00  0.00
ATOM     19  N   GLU    15       0.278   7.682  -4.337  1.00  0.00
ATOM     20  CA  GLU    15      -0.410   8.925  -4.650  1.00  0.00
ATOM     21  CB  GLU    15      -1.910   8.678  -4.820  1.00  0.00
ATOM     22  CG  GLU    15      -2.273   7.895  -6.071  1.00  0.00
ATOM     23  CD  GLU    15      -3.750   7.563  -6.144  1.00  0.00
ATOM     24  OE1 GLU    15      -4.479   7.882  -5.180  1.00  0.00
ATOM     25  OE2 GLU    15      -4.179   6.983  -7.163  1.00  0.00
ATOM     26  O   GLU    15      -0.012  11.152  -3.840  1.00  0.00
ATOM     27  C   GLU    15      -0.236   9.968  -3.550  1.00  0.00
ATOM     28  N   SER    16      -0.313   9.528  -2.293  1.00  0.00
ATOM     29  CA  SER    16      -0.177  10.442  -1.165  1.00  0.00
ATOM     30  CB  SER    16      -0.510   9.727   0.146  1.00  0.00
ATOM     31  OG  SER    16      -1.879   9.362   0.196  1.00  0.00
ATOM     32  O   SER    16       1.479  12.156  -0.899  1.00  0.00
ATOM     33  C   SER    16       1.255  10.967  -1.085  1.00  0.00
ATOM     34  N   LEU    17       2.213  10.069  -1.216  1.00  0.00
ATOM     35  CA  LEU    17       3.622  10.437  -1.202  1.00  0.00
ATOM     36  CB  LEU    17       4.500   9.204  -1.423  1.00  0.00
ATOM     37  CG  LEU    17       4.546   8.190  -0.277  1.00  0.00
ATOM     38  CD1 LEU    17       5.293   6.935  -0.699  1.00  0.00
ATOM     39  CD2 LEU    17       5.253   8.780   0.933  1.00  0.00
ATOM     40  O   LEU    17       4.578  12.483  -2.069  1.00  0.00
ATOM     41  C   LEU    17       3.939  11.455  -2.310  1.00  0.00
ATOM     42  N   ASP    18       3.490  11.159  -3.516  1.00  0.00
ATOM     43  CA  ASP    18       3.749  12.028  -4.664  1.00  0.00
ATOM     44  CB  ASP    18       3.222  11.389  -5.950  1.00  0.00
ATOM     45  CG  ASP    18       4.066  10.217  -6.409  1.00  0.00
ATOM     46  OD1 ASP    18       5.183  10.047  -5.875  1.00  0.00
ATOM     47  OD2 ASP    18       3.612   9.470  -7.301  1.00  0.00
ATOM     48  O   ASP    18       3.687  14.389  -4.808  1.00  0.00
ATOM     49  C   ASP    18       3.080  13.375  -4.506  1.00  0.00
ATOM     50  N   GLU    19       1.855  13.376  -4.008  1.00  0.00
ATOM     51  CA  GLU    19       1.125  14.614  -3.767  1.00  0.00
ATOM     52  CB  GLU    19      -0.243  14.316  -3.148  1.00  0.00
ATOM     53  CG  GLU    19      -1.101  15.550  -2.920  1.00  0.00
ATOM     54  CD  GLU    19      -2.469  15.211  -2.360  1.00  0.00
ATOM     55  OE1 GLU    19      -2.753  14.010  -2.169  1.00  0.00
ATOM     56  OE2 GLU    19      -3.258  16.147  -2.113  1.00  0.00
ATOM     57  O   GLU    19       1.897  16.746  -3.024  1.00  0.00
ATOM     58  C   GLU    19       1.872  15.535  -2.817  1.00  0.00
ATOM     59  N   LEU    20       2.489  14.959  -1.786  1.00  0.00
ATOM     60  CA  LEU    20       3.269  15.707  -0.820  1.00  0.00
ATOM     61  CB  LEU    20       3.456  14.896   0.463  1.00  0.00
ATOM     62  CG  LEU    20       2.181  14.553   1.240  1.00  0.00
ATOM     63  CD1 LEU    20       2.500  13.658   2.427  1.00  0.00
ATOM     64  CD2 LEU    20       1.515  15.817   1.762  1.00  0.00
ATOM     65  O   LEU    20       5.431  16.691  -0.612  1.00  0.00
ATOM     66  C   LEU    20       4.672  16.072  -1.331  1.00  0.00
ATOM     67  N   ASN    21       5.016  15.682  -2.570  1.00  0.00
ATOM     68  CA  ASN    21       6.322  15.968  -3.188  1.00  0.00
ATOM     69  CB  ASN    21       6.595  17.473  -3.191  1.00  0.00
ATOM     70  CG  ASN    21       5.675  18.230  -4.129  1.00  0.00
ATOM     71  ND2 ASN    21       5.444  19.505  -3.829  1.00  0.00
ATOM     72  OD1 ASN    21       5.181  17.676  -5.110  1.00  0.00
ATOM     73  O   ASN    21       8.614  15.825  -2.427  1.00  0.00
ATOM     74  C   ASN    21       7.504  15.304  -2.465  1.00  0.00
ATOM     75  N   VAL    22       7.253  14.128  -1.914  1.00  0.00
ATOM     76  CA  VAL    22       8.266  13.365  -1.189  1.00  0.00
ATOM     77  CB  VAL    22       7.687  12.732   0.091  1.00  0.00
ATOM     78  CG1 VAL    22       8.744  11.897   0.798  1.00  0.00
ATOM     79  CG2 VAL    22       7.205  13.810   1.048  1.00  0.00
ATOM     80  O   VAL    22       7.949  11.516  -2.615  1.00  0.00
ATOM     81  C   VAL    22       8.760  12.277  -2.114  1.00  0.00
ATOM     82  N   SER    23      10.069  12.182  -2.342  1.00  0.00
ATOM     83  CA  SER    23      10.585  11.091  -3.190  1.00  0.00
ATOM     84  CB  SER    23      11.992  11.423  -3.692  1.00  0.00
ATOM     85  OG  SER    23      12.924  11.439  -2.625  1.00  0.00
ATOM     86  O   SER    23      10.574   9.816  -1.175  1.00  0.00
ATOM     87  C   SER    23      10.645   9.800  -2.396  1.00  0.00
ATOM     88  N   LEU    24      10.812   8.680  -3.090  1.00  0.00
ATOM     89  CA  LEU    24      10.951   7.396  -2.409  1.00  0.00
ATOM     90  CB  LEU    24      11.153   6.270  -3.425  1.00  0.00
ATOM     91  CG  LEU    24       9.947   5.921  -4.298  1.00  0.00
ATOM     92  CD1 LEU    24      10.333   4.921  -5.378  1.00  0.00
ATOM     93  CD2 LEU    24       8.836   5.307  -3.459  1.00  0.00
ATOM     94  O   LEU    24      12.016   6.912  -0.338  1.00  0.00
ATOM     95  C   LEU    24      12.146   7.389  -1.461  1.00  0.00
ATOM     96  N   ARG    25      13.307   7.905  -1.886  1.00  0.00
ATOM     97  CA  ARG    25      14.486   7.919  -1.019  1.00  0.00
ATOM     98  CB  ARG    25      15.709   8.425  -1.786  1.00  0.00
ATOM     99  CG  ARG    25      16.233   7.452  -2.830  1.00  0.00
ATOM    100  CD  ARG    25      17.396   8.048  -3.605  1.00  0.00
ATOM    101  NE  ARG    25      17.908   7.127  -4.618  1.00  0.00
ATOM    102  CZ  ARG    25      18.870   7.428  -5.484  1.00  0.00
ATOM    103  NH1 ARG    25      19.271   6.526  -6.369  1.00  0.00
ATOM    104  NH2 ARG    25      19.427   8.631  -5.465  1.00  0.00
ATOM    105  O   ARG    25      14.745   8.554   1.256  1.00  0.00
ATOM    106  C   ARG    25      14.260   8.826   0.172  1.00  0.00
ATOM    107  N   GLU    26      13.544   9.916  -0.029  1.00  0.00
ATOM    108  CA  GLU    26      13.236  10.832   1.084  1.00  0.00
ATOM    109  CB  GLU    26      12.444  12.041   0.581  1.00  0.00
ATOM    110  CG  GLU    26      12.123  13.065   1.658  1.00  0.00
ATOM    111  CD  GLU    26      11.368  14.261   1.116  1.00  0.00
ATOM    112  OE1 GLU    26      11.107  14.298  -0.106  1.00  0.00
ATOM    113  OE2 GLU    26      11.036  15.165   1.913  1.00  0.00
ATOM    114  O   GLU    26      12.705  10.226   3.372  1.00  0.00
ATOM    115  C   GLU    26      12.399  10.139   2.171  1.00  0.00
ATOM    116  N   PHE    27      11.347   9.448   1.742  1.00  0.00
ATOM    117  CA  PHE    27      10.487   8.723   2.677  1.00  0.00
ATOM    118  CB  PHE    27       9.299   8.100   1.939  1.00  0.00
ATOM    119  CG  PHE    27       8.369   7.329   2.832  1.00  0.00
ATOM    120  CD1 PHE    27       7.438   7.986   3.618  1.00  0.00
ATOM    121  CD2 PHE    27       8.424   5.948   2.884  1.00  0.00
ATOM    122  CE1 PHE    27       6.582   7.276   4.439  1.00  0.00
ATOM    123  CE2 PHE    27       7.569   5.238   3.706  1.00  0.00
ATOM    124  CZ  PHE    27       6.650   5.897   4.480  1.00  0.00
ATOM    125  O   PHE    27      11.097   7.430   4.579  1.00  0.00
ATOM    126  C   PHE    27      11.236   7.602   3.381  1.00  0.00
ATOM    127  N   ALA    28      12.031   6.846   2.629  1.00  0.00
ATOM    128  CA  ALA    28      12.827   5.738   3.165  1.00  0.00
ATOM    129  CB  ALA    28      13.674   5.115   2.066  1.00  0.00
ATOM    130  O   ALA    28      13.890   5.611   5.346  1.00  0.00
ATOM    131  C   ALA    28      13.772   6.232   4.284  1.00  0.00
ATOM    132  N   ARG    29      14.439   7.351   4.022  1.00  0.00
ATOM    133  CA  ARG    29      15.339   7.960   4.987  1.00  0.00
ATOM    134  CB  ARG    29      15.988   9.214   4.397  1.00  0.00
ATOM    135  CG  ARG    29      17.011   8.929   3.309  1.00  0.00
ATOM    136  CD  ARG    29      17.561  10.216   2.718  1.00  0.00
ATOM    137  NE  ARG    29      18.526   9.960   1.650  1.00  0.00
ATOM    138  CZ  ARG    29      19.100  10.910   0.920  1.00  0.00
ATOM    139  NH1 ARG    29      19.967  10.582  -0.030  1.00  0.00
ATOM    140  NH2 ARG    29      18.809  12.184   1.140  1.00  0.00
ATOM    141  O   ARG    29      15.040   8.081   7.364  1.00  0.00
ATOM    142  C   ARG    29      14.589   8.371   6.267  1.00  0.00
ATOM    143  N   ALA    30      13.415   8.992   6.124  1.00  0.00
ATOM    144  CA  ALA    30      12.640   9.422   7.290  1.00  0.00
ATOM    145  CB  ALA    30      11.397  10.181   6.851  1.00  0.00
ATOM    146  O   ALA    30      12.235   8.244   9.377  1.00  0.00
ATOM    147  C   ALA    30      12.189   8.214   8.131  1.00  0.00
ATOM    148  N   MET    31      11.789   7.151   7.455  1.00  0.00
ATOM    149  CA  MET    31      11.238   5.976   8.119  1.00  0.00
ATOM    150  CB  MET    31      10.254   5.252   7.198  1.00  0.00
ATOM    151  CG  MET    31       9.038   6.079   6.817  1.00  0.00
ATOM    152  SD  MET    31       7.939   5.219   5.675  1.00  0.00
ATOM    153  CE  MET    31       7.284   3.935   6.739  1.00  0.00
ATOM    154  O   MET    31      11.998   3.952   9.136  1.00  0.00
ATOM    155  C   MET    31      12.308   4.970   8.517  1.00  0.00
ATOM    156  N   GLU    32      13.552   5.250   8.152  1.00  0.00
ATOM    157  CA  GLU    32      14.659   4.328   8.373  1.00  0.00
ATOM    158  CB  GLU    32      14.923   4.156   9.871  1.00  0.00
ATOM    159  CG  GLU    32      15.323   5.439  10.581  1.00  0.00
ATOM    160  CD  GLU    32      15.562   5.232  12.064  1.00  0.00
ATOM    161  OE1 GLU    32      15.491   4.072  12.521  1.00  0.00
ATOM    162  OE2 GLU    32      15.819   6.231  12.769  1.00  0.00
ATOM    163  O   GLU    32      14.597   1.921   8.483  1.00  0.00
ATOM    164  C   GLU    32      14.406   2.931   7.800  1.00  0.00
ATOM    165  N   ILE    33      13.928   2.884   6.551  1.00  0.00
ATOM    166  CA  ILE    33      13.842   1.652   5.789  1.00  0.00
ATOM    167  CB  ILE    33      12.378   1.225   5.571  1.00  0.00
ATOM    168  CG1 ILE    33      11.618   2.302   4.795  1.00  0.00
ATOM    169  CG2 ILE    33      11.682   1.009   6.906  1.00  0.00
ATOM    170  CD1 ILE    33      10.232   1.878   4.358  1.00  0.00
ATOM    171  O   ILE    33      14.908   2.980   4.083  1.00  0.00
ATOM    172  C   ILE    33      14.499   1.867   4.424  1.00  0.00
ATOM    173  N   ALA    34      14.580   0.808   3.632  1.00  0.00
ATOM    174  CA  ALA    34      15.165   0.896   2.307  1.00  0.00
ATOM    175  CB  ALA    34      15.572  -0.484   1.816  1.00  0.00
ATOM    176  O   ALA    34      12.978   1.367   1.454  1.00  0.00
ATOM    177  C   ALA    34      14.188   1.479   1.303  1.00  0.00
ATOM    178  N   PRO    35      14.725   2.099   0.262  1.00  0.00
ATOM    179  CA  PRO    35      13.908   2.540  -0.845  1.00  0.00
ATOM    180  CB  PRO    35      14.911   3.157  -1.822  1.00  0.00
ATOM    181  CG  PRO    35      16.030   3.631  -0.959  1.00  0.00
ATOM    182  CD  PRO    35      16.192   2.598   0.121  1.00  0.00
ATOM    183  O   PRO    35      12.014   1.518  -1.845  1.00  0.00
ATOM    184  C   PRO    35      13.163   1.370  -1.474  1.00  0.00
ATOM    185  N   SER    36      13.819   0.211  -1.573  1.00  0.00
ATOM    186  CA  SER    36      13.200  -1.012  -2.110  1.00  0.00
ATOM    187  CB  SER    36      14.169  -2.191  -2.008  1.00  0.00
ATOM    188  OG  SER    36      15.296  -1.999  -2.845  1.00  0.00
ATOM    189  O   SER    36      10.950  -1.777  -1.918  1.00  0.00
ATOM    190  C   SER    36      11.936  -1.365  -1.338  1.00  0.00
ATOM    191  N   THR    37      11.965  -1.208  -0.022  1.00  0.00
ATOM    192  CA  THR    37      10.766  -1.447   0.785  1.00  0.00
ATOM    193  CB  THR    37      11.040  -1.215   2.283  1.00  0.00
ATOM    194  CG2 THR    37       9.771  -1.428   3.094  1.00  0.00
ATOM    195  OG1 THR    37      12.041  -2.133   2.737  1.00  0.00
ATOM    196  O   THR    37       8.484  -1.005   0.269  1.00  0.00
ATOM    197  C   THR    37       9.604  -0.537   0.410  1.00  0.00
ATOM    198  N   ALA    38       9.873   0.760   0.277  1.00  0.00
ATOM    199  CA  ALA    38       8.837   1.716  -0.091  1.00  0.00
ATOM    200  CB  ALA    38       9.406   3.127  -0.117  1.00  0.00
ATOM    201  O   ALA    38       7.085   1.301  -1.687  1.00  0.00
ATOM    202  C   ALA    38       8.300   1.362  -1.482  1.00  0.00
ATOM    203  N   SER    39       9.203   1.096  -2.425  1.00  0.00
ATOM    204  CA  SER    39       8.805   0.796  -3.790  1.00  0.00
ATOM    205  CB  SER    39      10.035   0.607  -4.679  1.00  0.00
ATOM    206  OG  SER    39      10.762   1.817  -4.808  1.00  0.00
ATOM    207  O   SER    39       6.962  -0.542  -4.554  1.00  0.00
ATOM    208  C   SER    39       7.966  -0.493  -3.856  1.00  0.00
ATOM    209  N   ARG    40       8.364  -1.501  -3.076  1.00  0.00
ATOM    210  CA  ARG    40       7.654  -2.758  -2.975  1.00  0.00
ATOM    211  CB  ARG    40       8.354  -3.690  -1.983  1.00  0.00
ATOM    212  CG  ARG    40       9.682  -4.239  -2.475  1.00  0.00
ATOM    213  CD  ARG    40      10.353  -5.094  -1.414  1.00  0.00
ATOM    214  NE  ARG    40      11.646  -5.608  -1.863  1.00  0.00
ATOM    215  CZ  ARG    40      12.472  -6.322  -1.103  1.00  0.00
ATOM    216  NH1 ARG    40      13.626  -6.747  -1.596  1.00  0.00
ATOM    217  NH2 ARG    40      12.139  -6.608   0.148  1.00  0.00
ATOM    218  O   ARG    40       5.333  -3.237  -3.047  1.00  0.00
ATOM    219  C   ARG    40       6.224  -2.604  -2.503  1.00  0.00
ATOM    220  N   LEU    41       6.002  -1.760  -1.503  1.00  0.00
ATOM    221  CA  LEU    41       4.666  -1.488  -1.028  1.00  0.00
ATOM    222  CB  LEU    41       4.705  -0.528   0.162  1.00  0.00
ATOM    223  CG  LEU    41       3.353  -0.136   0.763  1.00  0.00
ATOM    224  CD1 LEU    41       2.629  -1.359   1.303  1.00  0.00
ATOM    225  CD2 LEU    41       3.538   0.851   1.905  1.00  0.00
ATOM    226  O   LEU    41       2.711  -1.264  -2.400  1.00  0.00
ATOM    227  C   LEU    41       3.847  -0.857  -2.144  1.00  0.00
ATOM    228  N   LEU    42       4.435   0.128  -2.812  1.00  0.00
ATOM    229  CA  LEU    42       3.735   0.851  -3.876  1.00  0.00
ATOM    230  CB  LEU    42       4.568   2.046  -4.348  1.00  0.00
ATOM    231  CG  LEU    42       4.743   3.189  -3.347  1.00  0.00
ATOM    232  CD1 LEU    42       5.713   4.231  -3.884  1.00  0.00
ATOM    233  CD2 LEU    42       3.413   3.873  -3.075  1.00  0.00
ATOM    234  O   LEU    42       2.466   0.211  -5.795  1.00  0.00
ATOM    235  C   LEU    42       3.453  -0.012  -5.105  1.00  0.00
ATOM    236  N   THR    43       4.299  -0.989  -5.376  1.00  0.00
ATOM    237  CA  THR    43       4.075  -1.914  -6.497  1.00  0.00
ATOM    238  CB  THR    43       5.404  -2.444  -7.065  1.00  0.00
ATOM    239  CG2 THR    43       6.259  -1.296  -7.581  1.00  0.00
ATOM    240  OG1 THR    43       6.126  -3.133  -6.036  1.00  0.00
ATOM    241  O   THR    43       3.076  -4.083  -6.818  1.00  0.00
ATOM    242  C   THR    43       3.237  -3.136  -6.057  1.00  0.00
ATOM    243  N   GLY    44       2.702  -3.098  -4.833  1.00  0.00
ATOM    244  CA  GLY    44       1.815  -4.143  -4.319  1.00  0.00
ATOM    245  O   GLY    44       1.804  -6.538  -4.525  1.00  0.00
ATOM    246  C   GLY    44       2.465  -5.524  -4.298  1.00  0.00
ATOM    247  N   LYS    45       3.759  -5.569  -4.048  1.00  0.00
ATOM    248  CA  LYS    45       4.436  -6.837  -3.922  1.00  0.00
ATOM    249  CB  LYS    45       5.949  -6.652  -4.049  1.00  0.00
ATOM    250  CG  LYS    45       6.407  -6.212  -5.431  1.00  0.00
ATOM    251  CD  LYS    45       7.916  -6.035  -5.483  1.00  0.00
ATOM    252  CE  LYS    45       8.376  -5.622  -6.871  1.00  0.00
ATOM    253  NZ  LYS    45       9.855  -5.466  -6.943  1.00  0.00
ATOM    254  O   LYS    45       4.230  -8.664  -2.382  1.00  0.00
ATOM    255  C   LYS    45       4.126  -7.452  -2.552  1.00  0.00
ATOM    256  N   ALA    46       3.752  -6.614  -1.583  1.00  0.00
ATOM    257  CA  ALA    46       3.450  -7.063  -0.220  1.00  0.00
ATOM    258  CB  ALA    46       4.687  -7.667   0.426  1.00  0.00
ATOM    259  O   ALA    46       3.200  -4.740   0.397  1.00  0.00
ATOM    260  C   ALA    46       2.974  -5.923   0.675  1.00  0.00
ATOM    261  N   ALA    47       2.364  -6.304   1.790  1.00  0.00
ATOM    262  CA  ALA    47       1.980  -5.332   2.793  1.00  0.00
ATOM    263  CB  ALA    47       0.740  -5.801   3.538  1.00  0.00
ATOM    264  O   ALA    47       3.846  -6.025   4.172  1.00  0.00
ATOM    265  C   ALA    47       3.094  -5.114   3.822  1.00  0.00
ATOM    266  N   LEU    48       3.176  -3.897   4.317  1.00  0.00
ATOM    267  CA  LEU    48       4.079  -3.589   5.425  1.00  0.00
ATOM    268  CB  LEU    48       4.144  -2.078   5.658  1.00  0.00
ATOM    269  CG  LEU    48       4.721  -1.241   4.517  1.00  0.00
ATOM    270  CD1 LEU    48       4.611   0.244   4.830  1.00  0.00
ATOM    271  CD2 LEU    48       6.190  -1.571   4.297  1.00  0.00
ATOM    272  O   LEU    48       2.461  -4.586   6.890  1.00  0.00
ATOM    273  C   LEU    48       3.627  -4.241   6.735  1.00  0.00
ATOM    274  N   THR    49       4.556  -4.359   7.673  1.00  0.00
ATOM    275  CA  THR    49       4.248  -4.702   9.051  1.00  0.00
ATOM    276  CB  THR    49       5.521  -4.764   9.915  1.00  0.00
ATOM    277  CG2 THR    49       6.475  -5.823   9.384  1.00  0.00
ATOM    278  OG1 THR    49       6.180  -3.491   9.891  1.00  0.00
ATOM    279  O   THR    49       3.213  -2.517   9.146  1.00  0.00
ATOM    280  C   THR    49       3.313  -3.649   9.643  1.00  0.00
ATOM    281  N   PRO    50       2.627  -4.020  10.715  1.00  0.00
ATOM    282  CA  PRO    50       1.819  -3.068  11.444  1.00  0.00
ATOM    283  CB  PRO    50       1.312  -3.860  12.651  1.00  0.00
ATOM    284  CG  PRO    50       1.249  -5.271  12.172  1.00  0.00
ATOM    285  CD  PRO    50       2.462  -5.473  11.308  1.00  0.00
ATOM    286  O   PRO    50       2.229  -0.724  11.694  1.00  0.00
ATOM    287  C   PRO    50       2.649  -1.871  11.870  1.00  0.00
ATOM    288  N   GLU    51       3.835  -2.123  12.418  1.00  0.00
ATOM    289  CA  GLU    51       4.659  -1.005  12.898  1.00  0.00
ATOM    290  CB  GLU    51       5.962  -1.524  13.510  1.00  0.00
ATOM    291  CG  GLU    51       5.782  -2.244  14.836  1.00  0.00
ATOM    292  CD  GLU    51       7.073  -2.850  15.352  1.00  0.00
ATOM    293  OE1 GLU    51       8.092  -2.771  14.635  1.00  0.00
ATOM    294  OE2 GLU    51       7.064  -3.404  16.470  1.00  0.00
ATOM    295  O   GLU    51       4.995   1.180  11.961  1.00  0.00
ATOM    296  C   GLU    51       5.037  -0.027  11.777  1.00  0.00
ATOM    297  N   MET    52       5.403  -0.543  10.615  1.00  0.00
ATOM    298  CA  MET    52       5.791   0.323   9.502  1.00  0.00
ATOM    299  CB  MET    52       6.368  -0.507   8.353  1.00  0.00
ATOM    300  CG  MET    52       7.719  -1.134   8.658  1.00  0.00
ATOM    301  SD  MET    52       8.330  -2.158   7.305  1.00  0.00
ATOM    302  CE  MET    52       8.717  -0.909   6.082  1.00  0.00
ATOM    303  O   MET    52       4.708   2.311   8.674  1.00  0.00
ATOM    304  C   MET    52       4.589   1.105   8.969  1.00  0.00
ATOM    305  N   ALA    53       3.442   0.439   8.853  1.00  0.00
ATOM    306  CA  ALA    53       2.192   1.111   8.491  1.00  0.00
ATOM    307  CB  ALA    53       1.024   0.143   8.579  1.00  0.00
ATOM    308  O   ALA    53       1.565   3.381   8.980  1.00  0.00
ATOM    309  C   ALA    53       1.917   2.281   9.430  1.00  0.00
ATOM    310  N   ILE    54       2.095   2.054  10.731  1.00  0.00
ATOM    311  CA  ILE    54       1.830   3.104  11.725  1.00  0.00
ATOM    312  CB  ILE    54       1.953   2.564  13.162  1.00  0.00
ATOM    313  CG1 ILE    54       0.833   1.562  13.453  1.00  0.00
ATOM    314  CG2 ILE    54       1.855   3.701  14.168  1.00  0.00
ATOM    315  CD1 ILE    54       1.024   0.789  14.738  1.00  0.00
ATOM    316  O   ILE    54       2.417   5.423  11.749  1.00  0.00
ATOM    317  C   ILE    54       2.811   4.276  11.600  1.00  0.00
ATOM    318  N   LYS    55       4.070   3.981  11.299  1.00  0.00
ATOM    319  CA  LYS    55       5.079   5.028  11.106  1.00  0.00
ATOM    320  CB  LYS    55       6.468   4.408  10.934  1.00  0.00
ATOM    321  CG  LYS    55       7.031   3.786  12.202  1.00  0.00
ATOM    322  CD  LYS    55       8.411   3.196  11.961  1.00  0.00
ATOM    323  CE  LYS    55       8.959   2.543  13.219  1.00  0.00
ATOM    324  NZ  LYS    55      10.302   1.938  12.993  1.00  0.00
ATOM    325  O   LYS    55       4.879   7.055   9.885  1.00  0.00
ATOM    326  C   LYS    55       4.762   5.844   9.871  1.00  0.00
ATOM    327  N   LEU    56       4.349   5.160   8.808  1.00  0.00
ATOM    328  CA  LEU    56       3.948   5.833   7.565  1.00  0.00
ATOM    329  CB  LEU    56       3.473   4.809   6.531  1.00  0.00
ATOM    330  CG  LEU    56       3.006   5.370   5.187  1.00  0.00
ATOM    331  CD1 LEU    56       4.142   6.100   4.484  1.00  0.00
ATOM    332  CD2 LEU    56       2.525   4.252   4.275  1.00  0.00
ATOM    333  O   LEU    56       2.875   7.950   7.430  1.00  0.00
ATOM    334  C   LEU    56       2.812   6.804   7.858  1.00  0.00
ATOM    335  N   SER    57       1.772   6.360   8.561  1.00  0.00
ATOM    336  CA  SER    57       0.604   7.198   8.838  1.00  0.00
ATOM    337  CB  SER    57      -0.477   6.388   9.557  1.00  0.00
ATOM    338  OG  SER    57      -0.996   5.372   8.719  1.00  0.00
ATOM    339  O   SER    57       0.436   9.506   9.575  1.00  0.00
ATOM    340  C   SER    57       0.968   8.383   9.720  1.00  0.00
ATOM    341  N   VAL    58       1.860   8.118  10.652  1.00  0.00
ATOM    342  CA  VAL    58       2.301   9.131  11.589  1.00  0.00
ATOM    343  CB  VAL    58       3.311   8.561  12.602  1.00  0.00
ATOM    344  CG1 VAL    58       3.908   9.677  13.445  1.00  0.00
ATOM    345  CG2 VAL    58       2.629   7.569  13.532  1.00  0.00
ATOM    346  O   VAL    58       2.575  11.445  10.932  1.00  0.00
ATOM    347  C   VAL    58       2.975  10.276  10.820  1.00  0.00
ATOM    348  N   VAL    59       3.972   9.942  10.025  1.00  0.00
ATOM    349  CA  VAL    59       4.768  10.973   9.362  1.00  0.00
ATOM    350  CB  VAL    59       6.073  10.395   8.785  1.00  0.00
ATOM    351  CG1 VAL    59       6.794  11.440   7.947  1.00  0.00
ATOM    352  CG2 VAL    59       7.002   9.952   9.905  1.00  0.00
ATOM    353  O   VAL    59       4.138  12.823   7.985  1.00  0.00
ATOM    354  C   VAL    59       4.015  11.618   8.210  1.00  0.00
ATOM    355  N   ILE    60       3.192  10.833   7.512  1.00  0.00
ATOM    356  CA  ILE    60       2.368  11.400   6.455  1.00  0.00
ATOM    357  CB  ILE    60       1.843  10.309   5.502  1.00  0.00
ATOM    358  CG1 ILE    60       0.912   9.352   6.250  1.00  0.00
ATOM    359  CG2 ILE    60       2.998   9.505   4.923  1.00  0.00
ATOM    360  CD1 ILE    60       0.231   8.339   5.355  1.00  0.00
ATOM    361  O   ILE    60       0.364  12.680   6.164  1.00  0.00
ATOM    362  C   ILE    60       1.131  12.150   6.965  1.00  0.00
ATOM    363  N   GLY    61       0.955  12.220   8.281  1.00  0.00
ATOM    364  CA  GLY    61      -0.141  12.959   8.898  1.00  0.00
ATOM    365  O   GLY    61      -2.216  13.615   7.832  1.00  0.00
ATOM    366  C   GLY    61      -1.471  12.698   8.202  1.00  0.00
ATOM    367  N   SER    62      -1.733  11.407   8.004  1.00  0.00
ATOM    368  CA  SER    62      -2.910  10.932   7.291  1.00  0.00
ATOM    369  CB  SER    62      -2.539  10.509   5.867  1.00  0.00
ATOM    370  OG  SER    62      -3.675  10.034   5.164  1.00  0.00
ATOM    371  O   SER    62      -2.677   8.862   8.465  1.00  0.00
ATOM    372  C   SER    62      -3.464   9.734   8.065  1.00  0.00
ATOM    373  N   SER    63      -4.787   9.662   8.283  1.00  0.00
ATOM    374  CA  SER    63      -5.361   8.480   8.937  1.00  0.00
ATOM    375  CB  SER    63      -6.889   8.538   8.902  1.00  0.00
ATOM    376  OG  SER    63      -7.456   7.378   9.487  1.00  0.00
ATOM    377  O   SER    63      -4.889   7.222   6.970  1.00  0.00
ATOM    378  C   SER    63      -4.890   7.249   8.207  1.00  0.00
ATOM    379  N   PRO    64      -4.452   6.263   8.972  1.00  0.00
ATOM    380  CA  PRO    64      -3.900   5.042   8.429  1.00  0.00
ATOM    381  CB  PRO    64      -3.717   4.142   9.652  1.00  0.00
ATOM    382  CG  PRO    64      -3.482   5.091  10.781  1.00  0.00
ATOM    383  CD  PRO    64      -4.401   6.256  10.545  1.00  0.00
ATOM    384  O   PRO    64      -4.399   3.905   6.392  1.00  0.00
ATOM    385  C   PRO    64      -4.841   4.405   7.413  1.00  0.00
ATOM    386  N   GLN    65      -6.140   4.451   7.674  1.00  0.00
ATOM    387  CA  GLN    65      -7.092   3.806   6.779  1.00  0.00
ATOM    388  CB  GLN    65      -8.460   3.685   7.451  1.00  0.00
ATOM    389  CG  GLN    65      -8.479   2.768   8.662  1.00  0.00
ATOM    390  CD  GLN    65      -9.816   2.775   9.379  1.00  0.00
ATOM    391  OE1 GLN    65     -10.690   3.586   9.074  1.00  0.00
ATOM    392  NE2 GLN    65      -9.977   1.870  10.337  1.00  0.00
ATOM    393  O   GLN    65      -7.822   3.938   4.536  1.00  0.00
ATOM    394  C   GLN    65      -7.324   4.537   5.471  1.00  0.00
TER
END



