
PFRMAT TS
TARGET T0335
AUTHOR SAM_T06_server
REMARK   6 
REMARK   6 T0335 model 3 Mon Jun 19 11:50:16 2006
METHOD The SAM-T06 server uses methods similar to SAM_T04 in CASP6 and
METHOD the SAM-T02 method in CASP5.
METHOD 
METHOD We start with a fully automated method:
METHOD    
METHOD     Use the SAM-T2K and SAM-T04 methods for finding homologs of the
METHOD       target and aligning them.
METHOD 
METHOD     Make local structure predictions using neural nets and the
METHOD       multiple alignments.  Different neural nets are used for the
METHOD       SAM-T2K alignments and the SAM-T04 alignments.
METHOD       We currently use 8 local-structure alphabets: 
METHOD 	DSSP
METHOD 	STRIDE
METHOD 	STR2	an extended version of DSSP that splits the beta strands
METHOD 		into multiple classes (parallel/antiparallel/mixed,
METHOD 					edge/center)
METHOD 	ALPHA	an discretization of the alpha torsion angle:
METHOD 		CA(i-i), CA(i), CA(i+1), CA(i+2)
METHOD 	BYS	a discretization of Ramachandran plots, due to Bystroff
METHOD 	CB_burial_14_7	a 7-state discretization of the number of C_beta
METHOD 		atoms in a 14 Angstrom radius sphere around the C_beta.
METHOD 	near-backbone-11 an 11-state discretization of the number of
METHOD 	      residues (represented by near-backbone points) in a 
METHOD 	      9.65 Angstrom radius sphere around the sidechain proxy
METHOD 	      spot for the residue.
METHOD 	DSSP_EHL2	CASP's collapse of the DSSP alphabet
METHOD 			DSSP_EHL2 is not predicted directly by a
METHOD 			neural net, but is computed as a weighted
METHOD 			average of the other backbone alphabet predictions. 
METHOD     
METHOD     We make 2-track HMMs with each alphabet (1.0 amino acid + 0.3 local structure)
METHOD       and use them to score a template library of 6400 (t04) or 9900 (t2k) templates
METHOD       We also used a single-track HMM to score not just the template
METHOD       library, but a non-redundant copy of the entire PDB.
METHOD 
METHOD     We also made a few 3-track HMMs (AA, str2, CB_burial_14_7 and 
METHOD       AA, str2, near-backbone-11) for finding and aligning more remote
METHOD       homologs.
METHOD     
METHOD     One-track HMMs built from the template library multiple alignments
METHOD        were used to score the target sequence (for early targets, only
METHOD        t2k template library was searched this way).
METHOD 
METHOD     All the logs of e-values were combined in a weighted average (with
METHOD        rather arbitrary weights, since we did not have time to
METHOD        optimize them), and the best templates ranked.  Ranking was
METHOD        separate for predictions from the t2k and t04 multiple alignments.
METHOD     
METHOD     Alignments of the target to the top templates were made using
METHOD       several different alignment methods (mainly using the SAM hmmscore
METHOD       program, but a few alignments were made with Bob Edgar's MUSCLE
METHOD       profile-profile aligner).
METHOD 
METHOD     Generate fragments (short 9-residue alignments for each position)
METHOD       using SAM's "fragfinder" program and the 3-track HMM.
METHOD 
METHOD     Then the "undertaker" program (named because it optimizes burial)
METHOD       is used to try to combine the alignments and the fragments into
METHOD       a consistent 3D model.  No single alignment or parent template
METHOD       was used, though in many cases one had much more influence than
METHOD       the others.  The alignment scores were not passed to undertaker,
METHOD       but were used only to pick the set of alignments and fragments
METHOD       that undertaker would see.  Helix and strand constraints
METHOD       generated from the secondary-structure predictions are passed to
METHOD       undertaker to use in the cost function.
METHOD 
METHOD     One important change in this server over previous methods is that
METHOD     sheet constraints are extracted from the top few alignments and
METHOD     passed to undertaker. 
METHOD -------------
MODEL  3
PARENT N/A
ATOM      2  N   SER     3      20.529   2.675   0.164  1.00  0.00
ATOM      3  CA  SER     3      21.251   3.855   0.720  1.00  0.00
ATOM      4  CB  SER     3      21.228   5.016  -0.276  1.00  0.00
ATOM      5  OG  SER     3      19.912   5.510  -0.454  1.00  0.00
ATOM      6  O   SER     3      19.699   3.669   2.540  1.00  0.00
ATOM      7  C   SER     3      20.588   4.316   2.022  1.00  0.00
ATOM      8  N   ASN     4      21.013   5.428   2.553  1.00  0.00
ATOM      9  CA  ASN     4      20.407   5.931   3.818  1.00  0.00
ATOM     10  CB  ASN     4      21.463   6.632   4.676  1.00  0.00
ATOM     11  CG  ASN     4      21.964   7.918   4.049  1.00  0.00
ATOM     12  ND2 ASN     4      22.792   8.649   4.787  1.00  0.00
ATOM     13  OD1 ASN     4      21.609   8.247   2.918  1.00  0.00
ATOM     14  O   ASN     4      18.862   7.681   4.362  1.00  0.00
ATOM     15  C   ASN     4      19.290   6.931   3.508  1.00  0.00
ATOM     16  N   ALA     5      18.812   6.945   2.292  1.00  0.00
ATOM     17  CA  ALA     5      17.723   7.897   1.930  1.00  0.00
ATOM     18  CB  ALA     5      17.722   8.155   0.431  1.00  0.00
ATOM     19  O   ALA     5      15.618   7.916   3.078  1.00  0.00
ATOM     20  C   ALA     5      16.361   7.318   2.328  1.00  0.00
ATOM     21  N   LYS     6      16.032   6.160   1.826  1.00  0.00
ATOM     22  CA  LYS     6      14.718   5.543   2.173  1.00  0.00
ATOM     23  CB  LYS     6      14.548   4.203   1.455  1.00  0.00
ATOM     24  CG  LYS     6      13.216   3.521   1.719  1.00  0.00
ATOM     25  CD  LYS     6      13.087   2.234   0.921  1.00  0.00
ATOM     26  CE  LYS     6      11.775   1.526   1.224  1.00  0.00
ATOM     27  NZ  LYS     6      11.645   0.250   0.467  1.00  0.00
ATOM     28  O   LYS     6      13.635   5.610   4.311  1.00  0.00
ATOM     29  C   LYS     6      14.629   5.304   3.682  1.00  0.00
ATOM     30  N   ILE     7      15.661   4.761   4.270  1.00  0.00
ATOM     31  CA  ILE     7      15.628   4.511   5.739  1.00  0.00
ATOM     32  CB  ILE     7      17.033   4.207   6.291  1.00  0.00
ATOM     33  CG1 ILE     7      17.530   2.857   5.768  1.00  0.00
ATOM     34  CG2 ILE     7      17.009   4.155   7.811  1.00  0.00
ATOM     35  CD1 ILE     7      18.997   2.600   6.039  1.00  0.00
ATOM     36  O   ILE     7      14.334   5.641   7.413  1.00  0.00
ATOM     37  C   ILE     7      15.086   5.745   6.463  1.00  0.00
ATOM     38  N   ALA     8      15.459   6.914   6.019  1.00  0.00
ATOM     39  CA  ALA     8      14.962   8.156   6.675  1.00  0.00
ATOM     40  CB  ALA     8      15.855   9.336   6.323  1.00  0.00
ATOM     41  O   ALA     8      12.773   9.110   6.891  1.00  0.00
ATOM     42  C   ALA     8      13.537   8.459   6.207  1.00  0.00
ATOM     43  N   ARG     9      13.174   7.988   5.046  1.00  0.00
ATOM     44  CA  ARG     9      11.799   8.246   4.531  1.00  0.00
ATOM     45  CB  ARG     9      11.661   7.740   3.093  1.00  0.00
ATOM     46  CG  ARG     9      12.428   8.560   2.070  1.00  0.00
ATOM     47  CD  ARG     9      12.315   7.953   0.680  1.00  0.00
ATOM     48  NE  ARG     9      13.055   8.725  -0.315  1.00  0.00
ATOM     49  CZ  ARG     9      13.229   8.345  -1.577  1.00  0.00
ATOM     50  NH1 ARG     9      13.916   9.112  -2.412  1.00  0.00
ATOM     51  NH2 ARG     9      12.713   7.200  -2.001  1.00  0.00
ATOM     52  O   ARG     9       9.675   8.012   5.619  1.00  0.00
ATOM     53  C   ARG     9      10.769   7.528   5.406  1.00  0.00
ATOM     54  N   ILE    10      11.110   6.376   5.916  1.00  0.00
ATOM     55  CA  ILE    10      10.150   5.630   6.781  1.00  0.00
ATOM     56  CB  ILE    10      10.574   4.160   6.957  1.00  0.00
ATOM     57  CG1 ILE    10      10.472   3.412   5.626  1.00  0.00
ATOM     58  CG2 ILE    10       9.675   3.465   7.969  1.00  0.00
ATOM     59  CD1 ILE    10      11.101   2.037   5.650  1.00  0.00
ATOM     60  O   ILE    10       9.068   6.230   8.834  1.00  0.00
ATOM     61  C   ILE    10      10.082   6.277   8.164  1.00  0.00
ATOM     62  N   GLY    20      11.153   6.882   8.597  1.00  0.00
ATOM     63  CA  GLY    20      11.151   7.534   9.937  1.00  0.00
ATOM     64  O   GLY    20       9.854   9.384  10.741  1.00  0.00
ATOM     65  C   GLY    20      10.528   8.929   9.838  1.00  0.00
ATOM     66  N   VAL    21      10.747   9.608   8.745  1.00  0.00
ATOM     67  CA  VAL    21      10.169  10.971   8.584  1.00  0.00
ATOM     68  CB  VAL    21      10.464  11.548   7.187  1.00  0.00
ATOM     69  CG1 VAL    21       9.702  12.847   6.975  1.00  0.00
ATOM     70  CG2 VAL    21      11.950  11.830   7.029  1.00  0.00
ATOM     71  O   VAL    21       8.033  11.895   9.163  1.00  0.00
ATOM     72  C   VAL    21       8.650  10.925   8.769  1.00  0.00
ATOM     73  N   ILE    22       8.044   9.805   8.485  1.00  0.00
ATOM     74  CA  ILE    22       6.564   9.699   8.644  1.00  0.00
ATOM     75  CB  ILE    22       6.099   8.231   8.628  1.00  0.00
ATOM     76  CG1 ILE    22       6.727   7.460   9.792  1.00  0.00
ATOM     77  CG2 ILE    22       6.507   7.557   7.328  1.00  0.00
ATOM     78  CD1 ILE    22       6.166   6.067   9.973  1.00  0.00
ATOM     79  O   ILE    22       6.908  10.415  10.906  1.00  0.00
ATOM     80  C   ILE    22       6.134  10.321   9.975  1.00  0.00
ATOM     81  N   THR    23       4.904  10.749  10.071  1.00  0.00
ATOM     82  CA  THR    23       4.428  11.366  11.341  1.00  0.00
ATOM     83  CB  THR    23       3.243  12.318  11.097  1.00  0.00
ATOM     84  CG2 THR    23       3.629  13.408  10.109  1.00  0.00
ATOM     85  OG1 THR    23       2.136  11.581  10.565  1.00  0.00
ATOM     86  O   THR    23       3.647   9.175  11.927  1.00  0.00
ATOM     87  C   THR    23       3.971  10.279  12.318  1.00  0.00
ATOM     88  N   GLU    24       3.939  10.584  13.587  1.00  0.00
ATOM     89  CA  GLU    24       3.499   9.570  14.586  1.00  0.00
ATOM     90  CB  GLU    24       3.601  10.136  16.004  1.00  0.00
ATOM     91  CG  GLU    24       5.027  10.315  16.500  1.00  0.00
ATOM     92  CD  GLU    24       5.090  10.963  17.869  1.00  0.00
ATOM     93  OE1 GLU    24       4.022  11.337  18.399  1.00  0.00
ATOM     94  OE2 GLU    24       6.207  11.098  18.411  1.00  0.00
ATOM     95  O   GLU    24       1.626   8.071  14.635  1.00  0.00
ATOM     96  C   GLU    24       2.045   9.168  14.322  1.00  0.00
ATOM     97  N   GLU    25       1.273  10.049  13.745  1.00  0.00
ATOM     98  CA  GLU    25      -0.151   9.717  13.461  1.00  0.00
ATOM     99  CB  GLU    25      -0.963  10.994  13.233  1.00  0.00
ATOM    100  CG  GLU    25      -1.091  11.876  14.466  1.00  0.00
ATOM    101  CD  GLU    25      -1.882  13.141  14.197  1.00  0.00
ATOM    102  OE1 GLU    25      -2.373  13.304  13.061  1.00  0.00
ATOM    103  OE2 GLU    25      -2.010  13.969  15.123  1.00  0.00
ATOM    104  O   GLU    25      -1.224   8.149  11.998  1.00  0.00
ATOM    105  C   GLU    25      -0.252   8.846  12.205  1.00  0.00
ATOM    106  N   GLU    26       0.749   8.880  11.369  1.00  0.00
ATOM    107  CA  GLU    26       0.714   8.054  10.127  1.00  0.00
ATOM    108  CB  GLU    26       1.864   8.438   9.195  1.00  0.00
ATOM    109  CG  GLU    26       1.869   7.686   7.874  1.00  0.00
ATOM    110  CD  GLU    26       3.002   8.117   6.963  1.00  0.00
ATOM    111  OE1 GLU    26       3.786   9.002   7.367  1.00  0.00
ATOM    112  OE2 GLU    26       3.107   7.569   5.845  1.00  0.00
ATOM    113  O   GLU    26       0.079   5.743  10.016  1.00  0.00
ATOM    114  C   GLU    26       0.844   6.569  10.474  1.00  0.00
ATOM    115  N   LYS    27       1.806   6.223  11.287  1.00  0.00
ATOM    116  CA  LYS    27       1.985   4.791  11.664  1.00  0.00
ATOM    117  CB  LYS    27       3.378   4.562  12.254  1.00  0.00
ATOM    118  CG  LYS    27       4.515   4.824  11.281  1.00  0.00
ATOM    119  CD  LYS    27       4.510   3.816  10.142  1.00  0.00
ATOM    120  CE  LYS    27       5.716   4.000   9.235  1.00  0.00
ATOM    121  NZ  LYS    27       5.721   3.023   8.113  1.00  0.00
ATOM    122  O   LYS    27       0.644   3.226  12.890  1.00  0.00
ATOM    123  C   LYS    27       0.938   4.391  12.707  1.00  0.00
ATOM    124  N   LYS    39       0.373   5.347  13.389  1.00  0.00
ATOM    125  CA  LYS    39      -0.656   5.023  14.418  1.00  0.00
ATOM    126  CB  LYS    39      -0.995   6.263  15.247  1.00  0.00
ATOM    127  CG  LYS    39      -2.004   6.013  16.356  1.00  0.00
ATOM    128  CD  LYS    39      -2.228   7.263  17.191  1.00  0.00
ATOM    129  CE  LYS    39      -3.262   7.022  18.280  1.00  0.00
ATOM    130  NZ  LYS    39      -3.533   8.252  19.072  1.00  0.00
ATOM    131  O   LYS    39      -2.498   3.516  14.129  1.00  0.00
ATOM    132  C   LYS    39      -1.936   4.523  13.744  1.00  0.00
ATOM    133  N   GLY    40      -2.401   5.217  12.741  1.00  0.00
ATOM    134  CA  GLY    40      -3.644   4.779  12.044  1.00  0.00
ATOM    135  O   GLY    40      -4.114   2.645  11.056  1.00  0.00
ATOM    136  C   GLY    40      -3.348   3.584  11.134  1.00  0.00
ATOM    137  N   PHE    41      -2.238   3.613  10.447  1.00  0.00
ATOM    138  CA  PHE    41      -1.891   2.477   9.546  1.00  0.00
ATOM    139  CB  PHE    41      -0.637   2.804   8.730  1.00  0.00
ATOM    140  CG  PHE    41      -0.311   1.777   7.684  1.00  0.00
ATOM    141  CD1 PHE    41      -1.068   1.677   6.532  1.00  0.00
ATOM    142  CD2 PHE    41       0.756   0.911   7.854  1.00  0.00
ATOM    143  CE1 PHE    41      -0.767   0.732   5.568  1.00  0.00
ATOM    144  CE2 PHE    41       1.057  -0.034   6.891  1.00  0.00
ATOM    145  CZ  PHE    41       0.300  -0.125   5.752  1.00  0.00
ATOM    146  O   PHE    41      -1.913   0.113   9.946  1.00  0.00
ATOM    147  C   PHE    41      -1.625   1.215  10.368  1.00  0.00
ATOM    148  N   ARG    42      -1.079   1.366  11.545  1.00  0.00
ATOM    149  CA  ARG    42      -0.799   0.174  12.394  1.00  0.00
ATOM    150  CB  ARG    42      -0.230   0.602  13.748  1.00  0.00
ATOM    151  CG  ARG    42       0.161  -0.557  14.651  1.00  0.00
ATOM    152  CD  ARG    42       0.870  -0.066  15.904  1.00  0.00
ATOM    153  NE  ARG    42       1.174  -1.159  16.825  1.00  0.00
ATOM    154  CZ  ARG    42       1.690  -0.993  18.037  1.00  0.00
ATOM    155  NH1 ARG    42       1.935  -2.045  18.804  1.00  0.00
ATOM    156  NH2 ARG    42       1.963   0.227  18.480  1.00  0.00
ATOM    157  O   ARG    42      -2.081  -1.814  12.798  1.00  0.00
ATOM    158  C   ARG    42      -2.092  -0.611  12.627  1.00  0.00
ATOM    159  N   SER    43      -3.210   0.066  12.628  1.00  0.00
ATOM    160  CA  SER    43      -4.507  -0.638  12.844  1.00  0.00
ATOM    161  CB  SER    43      -5.631   0.373  13.081  1.00  0.00
ATOM    162  OG  SER    43      -6.870  -0.282  13.292  1.00  0.00
ATOM    163  O   SER    43      -4.985  -2.686  11.692  1.00  0.00
ATOM    164  C   SER    43      -4.856  -1.481  11.615  1.00  0.00
ATOM    165  N   SER    44      -5.006  -0.855  10.478  1.00  0.00
ATOM    166  CA  SER    44      -5.340  -1.624   9.245  1.00  0.00
ATOM    167  CB  SER    44      -5.267  -0.721   8.012  1.00  0.00
ATOM    168  OG  SER    44      -6.279   0.271   8.045  1.00  0.00
ATOM    169  O   SER    44      -4.737  -3.896   8.778  1.00  0.00
ATOM    170  C   SER    44      -4.354  -2.781   9.065  1.00  0.00
ATOM    171  N   MET    45      -3.089  -2.519   9.234  1.00  0.00
ATOM    172  CA  MET    45      -2.075  -3.600   9.076  1.00  0.00
ATOM    173  CB  MET    45      -0.727  -3.158   9.648  1.00  0.00
ATOM    174  CG  MET    45       0.370  -4.205   9.535  1.00  0.00
ATOM    175  SD  MET    45       1.915  -3.681  10.303  1.00  0.00
ATOM    176  CE  MET    45       1.483  -3.783  12.038  1.00  0.00
ATOM    177  O   MET    45      -2.448  -5.960   9.301  1.00  0.00
ATOM    178  C   MET    45      -2.528  -4.862   9.816  1.00  0.00
ATOM    179  N   LYS    46      -3.007  -4.713  11.022  1.00  0.00
ATOM    180  CA  LYS    46      -3.465  -5.904  11.795  1.00  0.00
ATOM    181  CB  LYS    46      -3.855  -5.500  13.218  1.00  0.00
ATOM    182  CG  LYS    46      -2.683  -5.062  14.081  1.00  0.00
ATOM    183  CD  LYS    46      -3.145  -4.646  15.469  1.00  0.00
ATOM    184  CE  LYS    46      -1.970  -4.239  16.343  1.00  0.00
ATOM    185  NZ  LYS    46      -2.410  -3.816  17.702  1.00  0.00
ATOM    186  O   LYS    46      -5.025  -7.678  11.380  1.00  0.00
ATOM    187  C   LYS    46      -4.683  -6.542  11.119  1.00  0.00
ATOM    188  N   ASN    47      -5.338  -5.820  10.253  1.00  0.00
ATOM    189  CA  ASN    47      -6.533  -6.381   9.566  1.00  0.00
ATOM    190  CB  ASN    47      -7.323  -5.268   8.874  1.00  0.00
ATOM    191  CG  ASN    47      -8.070  -4.387   9.855  1.00  0.00
ATOM    192  ND2 ASN    47      -8.417  -3.181   9.419  1.00  0.00
ATOM    193  OD1 ASN    47      -8.332  -4.786  10.989  1.00  0.00
ATOM    194  O   ASN    47      -6.745  -8.425   8.333  1.00  0.00
ATOM    195  C   ASN    47      -6.110  -7.406   8.509  1.00  0.00
ATOM    196  N   THR    48      -5.042  -7.145   7.807  1.00  0.00
ATOM    197  CA  THR    48      -4.587  -8.106   6.765  1.00  0.00
ATOM    198  CB  THR    48      -3.559  -7.466   5.815  1.00  0.00
ATOM    199  CG2 THR    48      -3.080  -8.477   4.786  1.00  0.00
ATOM    200  OG1 THR    48      -4.160  -6.358   5.133  1.00  0.00
ATOM    201  O   THR    48      -4.083 -10.441   6.982  1.00  0.00
ATOM    202  C   THR    48      -3.934  -9.322   7.431  1.00  0.00
ATOM    203  N   LEU    49      -3.221  -9.111   8.505  1.00  0.00
ATOM    204  CA  LEU    49      -2.574 -10.256   9.203  1.00  0.00
ATOM    205  CB  LEU    49      -1.489  -9.755  10.159  1.00  0.00
ATOM    206  CG  LEU    49      -0.295  -9.045   9.518  1.00  0.00
ATOM    207  CD1 LEU    49       0.648  -8.508  10.584  1.00  0.00
ATOM    208  CD2 LEU    49       0.486 -10.003   8.631  1.00  0.00
ATOM    209  O   LEU    49      -3.383 -12.131  10.461  1.00  0.00
ATOM    210  C   LEU    49      -3.620 -11.030  10.008  1.00  0.00
ATOM    211  N   LYS    50      -4.780 -10.455  10.184  1.00  0.00
ATOM    212  CA  LYS    50      -5.853 -11.147  10.954  1.00  0.00
ATOM    213  CB  LYS    50      -7.176 -10.388  10.828  1.00  0.00
ATOM    214  CG  LYS    50      -8.316 -10.992  11.634  1.00  0.00
ATOM    215  CD  LYS    50      -9.578 -10.152  11.517  1.00  0.00
ATOM    216  CE  LYS    50     -10.717 -10.755  12.324  1.00  0.00
ATOM    217  NZ  LYS    50     -11.926  -9.884  12.314  1.00  0.00
ATOM    218  O   LYS    50      -6.561 -13.435  11.102  1.00  0.00
ATOM    219  C   LYS    50      -6.050 -12.568  10.418  1.00  0.00
ATOM    220  N   SER    51      -5.645 -12.814   9.203  1.00  0.00
ATOM    221  CA  SER    51      -5.803 -14.178   8.625  1.00  0.00
ATOM    222  CB  SER    51      -6.419 -14.100   7.227  1.00  0.00
ATOM    223  OG  SER    51      -7.736 -13.579   7.278  1.00  0.00
ATOM    224  O   SER    51      -4.313 -16.057   8.582  1.00  0.00
ATOM    225  C   SER    51      -4.431 -14.848   8.528  1.00  0.00
ATOM    226  N   VAL    52      -3.392 -14.072   8.386  1.00  0.00
ATOM    227  CA  VAL    52      -2.027 -14.665   8.289  1.00  0.00
ATOM    228  CB  VAL    52      -0.934 -13.584   8.378  1.00  0.00
ATOM    229  CG1 VAL    52      -0.893 -12.981   9.774  1.00  0.00
ATOM    230  CG2 VAL    52       0.431 -14.181   8.072  1.00  0.00
ATOM    231  O   VAL    52      -2.595 -15.756  10.346  1.00  0.00
ATOM    232  C   VAL    52      -1.805 -15.663   9.428  1.00  0.00
ATOM    233  N   GLU    58      -0.736 -16.409   9.378  1.00  0.00
ATOM    234  CA  GLU    58      -0.469 -17.400  10.459  1.00  0.00
ATOM    235  CB  GLU    58       0.122 -18.685   9.876  1.00  0.00
ATOM    236  CG  GLU    58      -0.803 -19.412   8.912  1.00  0.00
ATOM    237  CD  GLU    58      -0.164 -20.649   8.315  1.00  0.00
ATOM    238  OE1 GLU    58       1.011 -20.928   8.636  1.00  0.00
ATOM    239  OE2 GLU    58      -0.839 -21.345   7.526  1.00  0.00
ATOM    240  O   GLU    58       0.538 -17.207  12.627  1.00  0.00
ATOM    241  C   GLU    58       0.523 -16.824  11.475  1.00  0.00
ATOM    242  N   GLY    59       1.352 -15.907  11.056  1.00  0.00
ATOM    243  CA  GLY    59       2.339 -15.310  12.000  1.00  0.00
ATOM    244  O   GLY    59       2.066 -13.507  13.559  1.00  0.00
ATOM    245  C   GLY    59       1.879 -13.915  12.430  1.00  0.00
ATOM    246  N   ASN    60       1.277 -13.180  11.537  1.00  0.00
ATOM    247  CA  ASN    60       0.803 -11.813  11.889  1.00  0.00
ATOM    248  CB  ASN    60       1.262 -11.434  13.299  1.00  0.00
ATOM    249  CG  ASN    60       0.539 -12.219  14.376  1.00  0.00
ATOM    250  ND2 ASN    60       1.162 -12.325  15.545  1.00  0.00
ATOM    251  OD1 ASN    60      -0.562 -12.721  14.160  1.00  0.00
ATOM    252  O   ASN    60       1.747  -9.705  11.251  1.00  0.00
ATOM    253  C   ASN    60       1.373 -10.804  10.893  1.00  0.00
ATOM    254  N   ASP    61       1.442 -11.169   9.644  1.00  0.00
ATOM    255  CA  ASP    61       1.988 -10.232   8.622  1.00  0.00
ATOM    256  CB  ASP    61       3.309 -10.763   8.059  1.00  0.00
ATOM    257  CG  ASP    61       4.413 -10.793   9.097  1.00  0.00
ATOM    258  OD1 ASP    61       4.780  -9.713   9.606  1.00  0.00
ATOM    259  OD2 ASP    61       4.914 -11.897   9.400  1.00  0.00
ATOM    260  O   ASP    61       0.094 -10.871   7.299  1.00  0.00
ATOM    261  C   ASP    61       0.994 -10.073   7.469  1.00  0.00
ATOM    262  N   VAL    62       1.151  -9.054   6.671  1.00  0.00
ATOM    263  CA  VAL    62       0.213  -8.853   5.527  1.00  0.00
ATOM    264  CB  VAL    62       0.043  -7.360   5.193  1.00  0.00
ATOM    265  CG1 VAL    62      -0.874  -7.185   3.991  1.00  0.00
ATOM    266  CG2 VAL    62      -0.564  -6.615   6.372  1.00  0.00
ATOM    267  O   VAL    62       1.776  -9.198   3.741  1.00  0.00
ATOM    268  C   VAL    62       0.753  -9.568   4.285  1.00  0.00
ATOM    269  N   THR    63       0.080 -10.593   3.837  1.00  0.00
ATOM    270  CA  THR    63       0.561 -11.338   2.637  1.00  0.00
ATOM    271  CB  THR    63      -0.133 -12.707   2.506  1.00  0.00
ATOM    272  CG2 THR    63       0.115 -13.551   3.747  1.00  0.00
ATOM    273  OG1 THR    63      -1.544 -12.516   2.349  1.00  0.00
ATOM    274  O   THR    63      -0.718  -9.849   1.256  1.00  0.00
ATOM    275  C   THR    63       0.275 -10.543   1.360  1.00  0.00
ATOM    276  N   PRO    64       1.140 -10.639   0.387  1.00  0.00
ATOM    277  CA  PRO    64       0.923  -9.892  -0.885  1.00  0.00
ATOM    278  CB  PRO    64       2.174 -10.197  -1.711  1.00  0.00
ATOM    279  CG  PRO    64       3.227 -10.494  -0.697  1.00  0.00
ATOM    280  CD  PRO    64       2.537 -11.229   0.417  1.00  0.00
ATOM    281  O   PRO    64      -1.019  -9.640  -2.269  1.00  0.00
ATOM    282  C   PRO    64      -0.350 -10.384  -1.580  1.00  0.00
ATOM    283  N   GLU    65      -0.686 -11.631  -1.404  1.00  0.00
ATOM    284  CA  GLU    65      -1.912 -12.175  -2.059  1.00  0.00
ATOM    285  CB  GLU    65      -2.178 -13.607  -1.592  1.00  0.00
ATOM    286  CG  GLU    65      -3.380 -14.262  -2.252  1.00  0.00
ATOM    287  CD  GLU    65      -3.574 -15.700  -1.813  1.00  0.00
ATOM    288  OE1 GLU    65      -2.755 -16.192  -1.009  1.00  0.00
ATOM    289  OE2 GLU    65      -4.545 -16.336  -2.273  1.00  0.00
ATOM    290  O   GLU    65      -3.975 -11.051  -2.543  1.00  0.00
ATOM    291  C   GLU    65      -3.133 -11.318  -1.709  1.00  0.00
ATOM    292  N   LYS    66      -3.240 -10.891  -0.480  1.00  0.00
ATOM    293  CA  LYS    66      -4.413 -10.061  -0.082  1.00  0.00
ATOM    294  CB  LYS    66      -4.780 -10.318   1.381  1.00  0.00
ATOM    295  CG  LYS    66      -5.276 -11.728   1.657  1.00  0.00
ATOM    296  CD  LYS    66      -5.582 -11.926   3.134  1.00  0.00
ATOM    297  CE  LYS    66      -6.086 -13.333   3.409  1.00  0.00
ATOM    298  NZ  LYS    66      -6.417 -13.533   4.847  1.00  0.00
ATOM    299  O   LYS    66      -4.966  -7.728  -0.149  1.00  0.00
ATOM    300  C   LYS    66      -4.096  -8.572  -0.247  1.00  0.00
ATOM    301  N   LEU    67      -2.860  -8.240  -0.498  1.00  0.00
ATOM    302  CA  LEU    67      -2.496  -6.803  -0.668  1.00  0.00
ATOM    303  CB  LEU    67      -1.130  -6.671  -1.344  1.00  0.00
ATOM    304  CG  LEU    67      -0.599  -5.248  -1.528  1.00  0.00
ATOM    305  CD1 LEU    67      -0.395  -4.572  -0.180  1.00  0.00
ATOM    306  CD2 LEU    67       0.733  -5.263  -2.259  1.00  0.00
ATOM    307  O   LEU    67      -4.048  -5.050  -1.181  1.00  0.00
ATOM    308  C   LEU    67      -3.541  -6.094  -1.535  1.00  0.00
ATOM    309  N   LYS    68      -3.868  -6.655  -2.667  1.00  0.00
ATOM    310  CA  LYS    68      -4.885  -6.006  -3.542  1.00  0.00
ATOM    311  CB  LYS    68      -5.349  -6.975  -4.633  1.00  0.00
ATOM    312  CG  LYS    68      -6.389  -6.395  -5.576  1.00  0.00
ATOM    313  CD  LYS    68      -5.774  -5.370  -6.514  1.00  0.00
ATOM    314  CE  LYS    68      -6.782  -4.889  -7.545  1.00  0.00
ATOM    315  NZ  LYS    68      -6.198  -3.870  -8.461  1.00  0.00
ATOM    316  O   LYS    68      -6.439  -4.435  -2.622  1.00  0.00
ATOM    317  C   LYS    68      -6.086  -5.595  -2.693  1.00  0.00
ATOM    318  N   ARG    69      -6.711  -6.535  -2.038  1.00  0.00
ATOM    319  CA  ARG    69      -7.881  -6.190  -1.182  1.00  0.00
ATOM    320  CB  ARG    69      -8.476  -7.451  -0.552  1.00  0.00
ATOM    321  CG  ARG    69      -9.197  -8.356  -1.537  1.00  0.00
ATOM    322  CD  ARG    69      -9.686  -9.627  -0.862  1.00  0.00
ATOM    323  NE  ARG    69     -10.361 -10.520  -1.802  1.00  0.00
ATOM    324  CZ  ARG    69     -10.787 -11.742  -1.496  1.00  0.00
ATOM    325  NH1 ARG    69     -11.390 -12.482  -2.415  1.00  0.00
ATOM    326  NH2 ARG    69     -10.607 -12.220  -0.272  1.00  0.00
ATOM    327  O   ARG    69      -8.170  -4.361   0.343  1.00  0.00
ATOM    328  C   ARG    69      -7.439  -5.240  -0.067  1.00  0.00
ATOM    329  N   GLU    70      -6.239  -5.409   0.418  1.00  0.00
ATOM    330  CA  GLU    70      -5.736  -4.517   1.500  1.00  0.00
ATOM    331  CB  GLU    70      -4.330  -4.939   1.931  1.00  0.00
ATOM    332  CG  GLU    70      -3.750  -4.103   3.059  1.00  0.00
ATOM    333  CD  GLU    70      -2.400  -4.612   3.527  1.00  0.00
ATOM    334  OE1 GLU    70      -1.485  -4.730   2.686  1.00  0.00
ATOM    335  OE2 GLU    70      -2.258  -4.892   4.737  1.00  0.00
ATOM    336  O   GLU    70      -6.082  -2.152   1.688  1.00  0.00
ATOM    337  C   GLU    70      -5.684  -3.071   1.002  1.00  0.00
ATOM    338  N   GLN    71      -5.197  -2.866  -0.191  1.00  0.00
ATOM    339  CA  GLN    71      -5.120  -1.483  -0.742  1.00  0.00
ATOM    340  CB  GLN    71      -4.153  -1.430  -1.926  1.00  0.00
ATOM    341  CG  GLN    71      -2.706  -1.718  -1.559  1.00  0.00
ATOM    342  CD  GLN    71      -2.164  -0.749  -0.527  1.00  0.00
ATOM    343  OE1 GLN    71      -2.306   0.466  -0.666  1.00  0.00
ATOM    344  NE2 GLN    71      -1.537  -1.284   0.515  1.00  0.00
ATOM    345  O   GLN    71      -6.890   0.111  -1.034  1.00  0.00
ATOM    346  C   GLN    71      -6.501  -1.024  -1.221  1.00  0.00
ATOM    347  N   ARG    72      -7.240  -1.902  -1.840  1.00  0.00
ATOM    348  CA  ARG    72      -8.594  -1.521  -2.339  1.00  0.00
ATOM    349  CB  ARG    72      -9.366  -2.761  -2.793  1.00  0.00
ATOM    350  CG  ARG    72     -10.719  -2.456  -3.416  1.00  0.00
ATOM    351  CD  ARG    72     -11.484  -3.732  -3.725  1.00  0.00
ATOM    352  NE  ARG    72     -11.861  -4.452  -2.512  1.00  0.00
ATOM    353  CZ  ARG    72     -12.880  -4.114  -1.728  1.00  0.00
ATOM    354  NH1 ARG    72     -13.148  -4.828  -0.642  1.00  0.00
ATOM    355  NH2 ARG    72     -13.628  -3.062  -2.030  1.00  0.00
ATOM    356  O   ARG    72     -10.037   0.182  -1.463  1.00  0.00
ATOM    357  C   ARG    72      -9.401  -0.828  -1.236  1.00  0.00
ATOM    358  N   ASN    73      -9.387  -1.366  -0.046  1.00  0.00
ATOM    359  CA  ASN    73     -10.163  -0.739   1.063  1.00  0.00
ATOM    360  CB  ASN    73     -10.489  -1.775   2.141  1.00  0.00
ATOM    361  CG  ASN    73     -11.511  -2.793   1.679  1.00  0.00
ATOM    362  ND2 ASN    73     -11.530  -3.949   2.335  1.00  0.00
ATOM    363  OD1 ASN    73     -12.274  -2.545   0.746  1.00  0.00
ATOM    364  O   ASN    73      -9.922   1.351   2.213  1.00  0.00
ATOM    365  C   ASN    73      -9.364   0.395   1.713  1.00  0.00
ATOM    366  N   ASN    74      -8.062   0.299   1.716  1.00  0.00
ATOM    367  CA  ASN    74      -7.238   1.373   2.343  1.00  0.00
ATOM    368  CB  ASN    74      -5.752   1.021   2.268  1.00  0.00
ATOM    369  CG  ASN    74      -5.367  -0.087   3.230  1.00  0.00
ATOM    370  ND2 ASN    74      -4.238  -0.736   2.963  1.00  0.00
ATOM    371  OD1 ASN    74      -6.074  -0.352   4.201  1.00  0.00
ATOM    372  O   ASN    74      -7.308   3.765   2.196  1.00  0.00
ATOM    373  C   ASN    74      -7.457   2.705   1.620  1.00  0.00
ATOM    374  N   LYS    75      -7.807   2.662   0.365  1.00  0.00
ATOM    375  CA  LYS    75      -8.033   3.929  -0.388  1.00  0.00
ATOM    376  CB  LYS    75      -7.939   5.133   0.551  1.00  0.00
ATOM    377  CG  LYS    75      -9.056   5.207   1.580  1.00  0.00
ATOM    378  CD  LYS    75      -8.914   6.438   2.462  1.00  0.00
ATOM    379  CE  LYS    75     -10.020   6.503   3.501  1.00  0.00
ATOM    380  NZ  LYS    75      -9.888   7.699   4.378  1.00  0.00
ATOM    381  O   LYS    75      -6.644   5.164  -1.901  1.00  0.00
ATOM    382  C   LYS    75      -6.975   4.072  -1.484  1.00  0.00
ATOM    383  N   LEU    76      -6.443   2.978  -1.955  1.00  0.00
ATOM    384  CA  LEU    76      -5.406   3.054  -3.024  1.00  0.00
ATOM    385  CB  LEU    76      -4.104   2.403  -2.555  1.00  0.00
ATOM    386  CG  LEU    76      -3.460   3.001  -1.303  1.00  0.00
ATOM    387  CD1 LEU    76      -2.258   2.174  -0.869  1.00  0.00
ATOM    388  CD2 LEU    76      -2.988   4.423  -1.568  1.00  0.00
ATOM    389  O   LEU    76      -6.995   1.826  -4.335  1.00  0.00
ATOM    390  C   LEU    76      -5.889   2.326  -4.282  1.00  0.00
ATOM    391  N   HIS    77      -5.067   2.261  -5.293  1.00  0.00
ATOM    392  CA  HIS    77      -5.480   1.565  -6.546  1.00  0.00
ATOM    393  CB  HIS    77      -6.111   2.555  -7.525  1.00  0.00
ATOM    394  CG  HIS    77      -7.306   3.271  -6.976  1.00  0.00
ATOM    395  CD2 HIS    77      -7.570   4.609  -6.464  1.00  0.00
ATOM    396  ND1 HIS    77      -8.539   2.672  -6.848  1.00  0.00
ATOM    397  CE1 HIS    77      -9.406   3.560  -6.326  1.00  0.00
ATOM    398  NE2 HIS    77      -8.830   4.723  -6.094  1.00  0.00
ATOM    399  O   HIS    77      -3.959   1.210  -8.358  1.00  0.00
ATOM    400  C   HIS    77      -4.264   0.923  -7.217  1.00  0.00
ATOM    401  N   LEU    78      -3.608   0.068  -6.478  1.00  0.00
ATOM    402  CA  LEU    78      -2.407  -0.630  -7.000  1.00  0.00
ATOM    403  CB  LEU    78      -1.654  -1.323  -5.863  1.00  0.00
ATOM    404  CG  LEU    78      -1.054  -0.409  -4.792  1.00  0.00
ATOM    405  CD1 LEU    78      -0.443  -1.230  -3.667  1.00  0.00
ATOM    406  CD2 LEU    78       0.035   0.472  -5.384  1.00  0.00
ATOM    407  O   LEU    78      -3.849  -2.306  -7.932  1.00  0.00
ATOM    408  C   LEU    78      -2.806  -1.689  -8.032  1.00  0.00
ATOM    409  N   GLU    79      -1.980  -1.908  -9.019  1.00  0.00
ATOM    410  CA  GLU    79      -2.308  -2.931 -10.054  1.00  0.00
ATOM    411  CB  GLU    79      -1.540  -2.650 -11.347  1.00  0.00
ATOM    412  CG  GLU    79      -1.899  -1.327 -12.006  1.00  0.00
ATOM    413  CD  GLU    79      -1.135  -1.092 -13.294  1.00  0.00
ATOM    414  OE1 GLU    79      -0.253  -1.915 -13.621  1.00  0.00
ATOM    415  OE2 GLU    79      -1.416  -0.085 -13.976  1.00  0.00
ATOM    416  O   GLU    79      -1.289  -4.465  -8.527  1.00  0.00
ATOM    417  C   GLU    79      -1.927  -4.327  -9.552  1.00  0.00
ATOM    418  N   HIS    80      -2.336  -5.317 -10.297  1.00  0.00
ATOM    419  CA  HIS    80      -2.035  -6.722  -9.923  1.00  0.00
ATOM    420  CB  HIS    80      -2.867  -7.690 -10.768  1.00  0.00
ATOM    421  CG  HIS    80      -4.343  -7.554 -10.564  1.00  0.00
ATOM    422  CD2 HIS    80      -5.469  -7.119 -11.379  1.00  0.00
ATOM    423  ND1 HIS    80      -4.963  -7.875  -9.375  1.00  0.00
ATOM    424  CE1 HIS    80      -6.284  -7.650  -9.496  1.00  0.00
ATOM    425  NE2 HIS    80      -6.595  -7.196 -10.695  1.00  0.00
ATOM    426  O   HIS    80       0.036  -7.833  -9.450  1.00  0.00
ATOM    427  C   HIS    80      -0.552  -7.035 -10.151  1.00  0.00
TER
END



