
PFRMAT TS
TARGET T0354
AUTHOR SAM_T06_server
REMARK   6 
REMARK   6 T0354 model 2 Thu Jun 29 13:30:28 2006
METHOD The SAM-T06 server uses methods similar to SAM_T04 in CASP6 and
METHOD the SAM-T02 method in CASP5.
METHOD 
METHOD We start with a fully automated method:
METHOD    
METHOD     Use the SAM-T2K and SAM-T04 methods for finding homologs of the
METHOD       target and aligning them.
METHOD 
METHOD     Make local structure predictions using neural nets and the
METHOD       multiple alignments.  Different neural nets are used for the
METHOD       SAM-T2K alignments and the SAM-T04 alignments.
METHOD       We currently use 8 local-structure alphabets: 
METHOD 	DSSP
METHOD 	STRIDE
METHOD 	STR2	an extended version of DSSP that splits the beta strands
METHOD 		into multiple classes (parallel/antiparallel/mixed,
METHOD 					edge/center)
METHOD 	ALPHA	an discretization of the alpha torsion angle:
METHOD 		CA(i-i), CA(i), CA(i+1), CA(i+2)
METHOD 	BYS	a discretization of Ramachandran plots, due to Bystroff
METHOD 	CB_burial_14_7	a 7-state discretization of the number of C_beta
METHOD 		atoms in a 14 Angstrom radius sphere around the C_beta.
METHOD 	near-backbone-11 an 11-state discretization of the number of
METHOD 	      residues (represented by near-backbone points) in a 
METHOD 	      9.65 Angstrom radius sphere around the sidechain proxy
METHOD 	      spot for the residue.
METHOD 	DSSP_EHL2	CASP's collapse of the DSSP alphabet
METHOD 			DSSP_EHL2 is not predicted directly by a
METHOD 			neural net, but is computed as a weighted
METHOD 			average of the other backbone alphabet predictions. 
METHOD     
METHOD     We make 2-track HMMs with each alphabet (1.0 amino acid + 0.3 local structure)
METHOD       and use them to score a template library of 6400 (t04) or 9900 (t2k) templates
METHOD       We also used a single-track HMM to score not just the template
METHOD       library, but a non-redundant copy of the entire PDB.
METHOD 
METHOD     We also made a few 3-track HMMs (AA, str2, CB_burial_14_7 and 
METHOD       AA, str2, near-backbone-11) for finding and aligning more remote
METHOD       homologs.
METHOD     
METHOD     One-track HMMs built from the template library multiple alignments
METHOD        were used to score the target sequence (for early targets, only
METHOD        t2k template library was searched this way).
METHOD 
METHOD     All the logs of e-values were combined in a weighted average (with
METHOD        rather arbitrary weights, since we did not have time to
METHOD        optimize them), and the best templates ranked.  Ranking was
METHOD        separate for predictions from the t2k and t04 multiple alignments.
METHOD     
METHOD     Alignments of the target to the top templates were made using
METHOD       several different alignment methods (mainly using the SAM hmmscore
METHOD       program, but a few alignments were made with Bob Edgar's MUSCLE
METHOD       profile-profile aligner).
METHOD 
METHOD     Generate fragments (short 9-residue alignments for each position)
METHOD       using SAM's "fragfinder" program and the 3-track HMM.
METHOD 
METHOD     Then the "undertaker" program (named because it optimizes burial)
METHOD       is used to try to combine the alignments and the fragments into
METHOD       a consistent 3D model.  No single alignment or parent template
METHOD       was used, though in many cases one had much more influence than
METHOD       the others.  The alignment scores were not passed to undertaker,
METHOD       but were used only to pick the set of alignments and fragments
METHOD       that undertaker would see.  Helix and strand constraints
METHOD       generated from the secondary-structure predictions are passed to
METHOD       undertaker to use in the cost function.
METHOD 
METHOD     One important change in this server over previous methods is that
METHOD     sheet constraints are extracted from the top few alignments and
METHOD     passed to undertaker. 
METHOD -------------
MODEL  2
PARENT N/A
ATOM      2  N   ILE     3       8.994   3.087  12.109  1.00  0.00
ATOM      3  CA  ILE     3       8.077   2.721  11.021  1.00  0.00
ATOM      4  CB  ILE     3       8.737   1.743  10.031  1.00  0.00
ATOM      5  CG1 ILE     3       9.868   2.438   9.270  1.00  0.00
ATOM      6  CG2 ILE     3       7.718   1.235   9.023  1.00  0.00
ATOM      7  CD1 ILE     3      10.744   1.490   8.479  1.00  0.00
ATOM      8  O   ILE     3       5.701   2.382  11.157  1.00  0.00
ATOM      9  C   ILE     3       6.818   2.047  11.557  1.00  0.00
ATOM     10  N   GLN     4       7.000   1.098  12.466  1.00  0.00
ATOM     11  CA  GLN     4       5.875   0.396  13.055  1.00  0.00
ATOM     12  CB  GLN     4       6.361  -0.632  14.080  1.00  0.00
ATOM     13  CG  GLN     4       7.065  -1.832  13.467  1.00  0.00
ATOM     14  CD  GLN     4       7.650  -2.761  14.513  1.00  0.00
ATOM     15  OE1 GLN     4       7.600  -2.473  15.709  1.00  0.00
ATOM     16  NE2 GLN     4       8.205  -3.880  14.065  1.00  0.00
ATOM     17  O   GLN     4       3.725   1.320  13.571  1.00  0.00
ATOM     18  C   GLN     4       4.934   1.379  13.768  1.00  0.00
ATOM     19  N   GLU     5       5.503   2.301  14.552  1.00  0.00
ATOM     20  CA  GLU     5       4.732   3.349  15.228  1.00  0.00
ATOM     21  CB  GLU     5       5.657   4.257  16.040  1.00  0.00
ATOM     22  CG  GLU     5       6.246   3.596  17.276  1.00  0.00
ATOM     23  CD  GLU     5       7.252   4.481  17.986  1.00  0.00
ATOM     24  OE1 GLU     5       7.543   5.582  17.472  1.00  0.00
ATOM     25  OE2 GLU     5       7.747   4.074  19.058  1.00  0.00
ATOM     26  O   GLU     5       2.812   4.541  14.430  1.00  0.00
ATOM     27  C   GLU     5       3.975   4.227  14.229  1.00  0.00
ATOM     28  N   ILE     6       4.646   4.610  13.148  1.00  0.00
ATOM     29  CA  ILE     6       4.013   5.361  12.050  1.00  0.00
ATOM     30  CB  ILE     6       5.025   5.700  10.940  1.00  0.00
ATOM     31  CG1 ILE     6       6.060   6.703  11.452  1.00  0.00
ATOM     32  CG2 ILE     6       4.317   6.308   9.740  1.00  0.00
ATOM     33  CD1 ILE     6       7.243   6.887  10.525  1.00  0.00
ATOM     34  O   ILE     6       1.808   5.080  11.193  1.00  0.00
ATOM     35  C   ILE     6       2.886   4.565  11.409  1.00  0.00
ATOM     36  N   SER     7       3.127   3.292  11.139  1.00  0.00
ATOM     37  CA  SER     7       2.113   2.439  10.509  1.00  0.00
ATOM     38  CB  SER     7       2.641   1.011  10.347  1.00  0.00
ATOM     39  OG  SER     7       3.720   0.968   9.430  1.00  0.00
ATOM     40  O   SER     7      -0.273   2.512  10.852  1.00  0.00
ATOM     41  C   SER     7       0.844   2.394  11.371  1.00  0.00
ATOM     42  N   LYS     8       1.036   2.257  12.681  1.00  0.00
ATOM     43  CA  LYS     8      -0.057   2.237  13.647  1.00  0.00
ATOM     44  CB  LYS     8       0.475   1.953  15.053  1.00  0.00
ATOM     45  CG  LYS     8      -0.603   1.874  16.120  1.00  0.00
ATOM     46  CD  LYS     8      -0.013   1.518  17.477  1.00  0.00
ATOM     47  CE  LYS     8      -1.086   1.487  18.553  1.00  0.00
ATOM     48  NZ  LYS     8      -0.518   1.164  19.891  1.00  0.00
ATOM     49  O   LYS     8      -2.041   3.587  13.686  1.00  0.00
ATOM     50  C   LYS     8      -0.815   3.572  13.705  1.00  0.00
ATOM     51  N   LEU     9      -0.085   4.685  13.772  1.00  0.00
ATOM     52  CA  LEU     9      -0.711   5.997  13.828  1.00  0.00
ATOM     53  CB  LEU     9       0.343   7.087  14.028  1.00  0.00
ATOM     54  CG  LEU     9       1.042   7.112  15.389  1.00  0.00
ATOM     55  CD1 LEU     9       2.182   8.119  15.390  1.00  0.00
ATOM     56  CD2 LEU     9       0.064   7.502  16.488  1.00  0.00
ATOM     57  O   LEU     9      -2.558   6.977  12.662  1.00  0.00
ATOM     58  C   LEU     9      -1.483   6.372  12.579  1.00  0.00
ATOM     59  N   ALA    10      -0.908   6.051  11.426  1.00  0.00
ATOM     60  CA  ALA    10      -1.522   6.354  10.141  1.00  0.00
ATOM     61  CB  ALA    10      -0.551   6.062   9.008  1.00  0.00
ATOM     62  O   ALA    10      -3.812   5.999   9.575  1.00  0.00
ATOM     63  C   ALA    10      -2.768   5.491   9.973  1.00  0.00
ATOM     64  N   ILE    11      -2.668   4.204  10.316  1.00  0.00
ATOM     65  CA  ILE    11      -3.829   3.284  10.271  1.00  0.00
ATOM     66  CB  ILE    11      -3.450   1.872  10.760  1.00  0.00
ATOM     67  CG1 ILE    11      -2.484   1.210   9.777  1.00  0.00
ATOM     68  CG2 ILE    11      -4.689   0.999  10.881  1.00  0.00
ATOM     69  CD1 ILE    11      -1.850  -0.058  10.306  1.00  0.00
ATOM     70  O   ILE    11      -6.131   3.742  10.719  1.00  0.00
ATOM     71  C   ILE    11      -4.976   3.762  11.144  1.00  0.00
ATOM     72  N   GLU    12      -4.654   4.172  12.367  1.00  0.00
ATOM     73  CA  GLU    12      -5.657   4.679  13.298  1.00  0.00
ATOM     74  CB  GLU    12      -4.998   5.121  14.606  1.00  0.00
ATOM     75  CG  GLU    12      -4.474   3.976  15.456  1.00  0.00
ATOM     76  CD  GLU    12      -3.720   4.455  16.680  1.00  0.00
ATOM     77  OE1 GLU    12      -3.544   5.684  16.826  1.00  0.00
ATOM     78  OE2 GLU    12      -3.306   3.605  17.495  1.00  0.00
ATOM     79  O   GLU    12      -7.640   5.942  12.906  1.00  0.00
ATOM     80  C   GLU    12      -6.427   5.875  12.765  1.00  0.00
ATOM     81  N   ALA    13      -5.724   6.820  12.153  1.00  0.00
ATOM     82  CA  ALA    13      -6.385   7.994  11.580  1.00  0.00
ATOM     83  CB  ALA    13      -5.352   9.011  11.117  1.00  0.00
ATOM     84  O   ALA    13      -8.368   8.076  10.208  1.00  0.00
ATOM     85  C   ALA    13      -7.246   7.587  10.369  1.00  0.00
ATOM     86  N   LEU    14      -6.730   6.673   9.547  1.00  0.00
ATOM     87  CA  LEU    14      -7.493   6.191   8.384  1.00  0.00
ATOM     88  CB  LEU    14      -6.660   5.197   7.572  1.00  0.00
ATOM     89  CG  LEU    14      -5.460   5.774   6.819  1.00  0.00
ATOM     90  CD1 LEU    14      -4.622   4.661   6.208  1.00  0.00
ATOM     91  CD2 LEU    14      -5.921   6.691   5.696  1.00  0.00
ATOM     92  O   LEU    14      -9.824   5.694   8.247  1.00  0.00
ATOM     93  C   LEU    14      -8.766   5.497   8.844  1.00  0.00
ATOM     94  N   GLU    15      -8.665   4.722   9.924  1.00  0.00
ATOM     95  CA  GLU    15      -9.834   4.077  10.509  1.00  0.00
ATOM     96  CB  GLU    15      -9.427   3.212  11.703  1.00  0.00
ATOM     97  CG  GLU    15      -8.658   1.956  11.326  1.00  0.00
ATOM     98  CD  GLU    15      -8.165   1.189  12.537  1.00  0.00
ATOM     99  OE1 GLU    15      -8.363   1.676  13.669  1.00  0.00
ATOM    100  OE2 GLU    15      -7.582   0.100  12.353  1.00  0.00
ATOM    101  O   GLU    15     -12.032   4.943  10.763  1.00  0.00
ATOM    102  C   GLU    15     -10.843   5.115  10.994  1.00  0.00
ATOM    103  N   ASP    16     -10.369   6.184  11.653  1.00  0.00
ATOM    104  CA  ASP    16     -11.251   7.253  12.181  1.00  0.00
ATOM    105  CB  ASP    16     -10.424   8.326  12.891  1.00  0.00
ATOM    106  CG  ASP    16      -9.882   7.855  14.227  1.00  0.00
ATOM    107  OD1 ASP    16     -10.335   6.797  14.711  1.00  0.00
ATOM    108  OD2 ASP    16      -9.006   8.545  14.789  1.00  0.00
ATOM    109  O   ASP    16     -13.236   8.240  11.273  1.00  0.00
ATOM    110  C   ASP    16     -12.055   7.953  11.092  1.00  0.00
ATOM    111  N   ILE    17     -11.391   8.270   9.987  1.00  0.00
ATOM    112  CA  ILE    17     -12.001   9.022   8.895  1.00  0.00
ATOM    113  CB  ILE    17     -10.980   9.949   8.210  1.00  0.00
ATOM    114  CG1 ILE    17      -9.883   9.124   7.532  1.00  0.00
ATOM    115  CG2 ILE    17     -10.331  10.873   9.228  1.00  0.00
ATOM    116  CD1 ILE    17      -8.955   9.943   6.661  1.00  0.00
ATOM    117  O   ILE    17     -13.026   8.507   6.793  1.00  0.00
ATOM    118  C   ILE    17     -12.554   8.072   7.847  1.00  0.00
ATOM    119  N   LYS    18     -12.452   6.773   8.140  1.00  0.00
ATOM    120  CA  LYS    18     -12.936   5.706   7.270  1.00  0.00
ATOM    121  CB  LYS    18     -14.459   5.770   7.141  1.00  0.00
ATOM    122  CG  LYS    18     -15.204   5.533   8.444  1.00  0.00
ATOM    123  CD  LYS    18     -16.709   5.596   8.241  1.00  0.00
ATOM    124  CE  LYS    18     -17.453   5.393   9.550  1.00  0.00
ATOM    125  NZ  LYS    18     -18.923   5.559   9.385  1.00  0.00
ATOM    126  O   LYS    18     -13.084   5.730   4.868  1.00  0.00
ATOM    127  C   LYS    18     -12.346   5.803   5.860  1.00  0.00
ATOM    128  N   GLY    19     -11.023   5.979   5.778  1.00  0.00
ATOM    129  CA  GLY    19     -10.304   5.962   4.508  1.00  0.00
ATOM    130  O   GLY    19      -9.264   3.928   5.172  1.00  0.00
ATOM    131  C   GLY    19      -9.804   4.554   4.260  1.00  0.00
ATOM    132  N   LYS    20      -9.997   4.079   3.022  1.00  0.00
ATOM    133  CA  LYS    20      -9.558   2.760   2.561  1.00  0.00
ATOM    134  CB  LYS    20     -10.662   2.083   1.746  1.00  0.00
ATOM    135  CG  LYS    20     -11.914   1.759   2.544  1.00  0.00
ATOM    136  CD  LYS    20     -12.973   1.106   1.672  1.00  0.00
ATOM    137  CE  LYS    20     -14.222   0.777   2.473  1.00  0.00
ATOM    138  NZ  LYS    20     -15.238   0.066   1.648  1.00  0.00
ATOM    139  O   LYS    20      -7.615   1.933   1.395  1.00  0.00
ATOM    140  C   LYS    20      -8.316   2.909   1.682  1.00  0.00
ATOM    141  N   ASP    21      -8.050   4.147   1.275  1.00  0.00
ATOM    142  CA  ASP    21      -6.889   4.473   0.467  1.00  0.00
ATOM    143  CB  ASP    21      -7.311   5.225  -0.797  1.00  0.00
ATOM    144  CG  ASP    21      -8.158   4.376  -1.725  1.00  0.00
ATOM    145  OD1 ASP    21      -7.717   3.261  -2.079  1.00  0.00
ATOM    146  OD2 ASP    21      -9.262   4.824  -2.098  1.00  0.00
ATOM    147  O   ASP    21      -6.358   6.295   1.951  1.00  0.00
ATOM    148  C   ASP    21      -5.925   5.360   1.269  1.00  0.00
ATOM    149  N   ILE    22      -4.640   5.020   1.244  1.00  0.00
ATOM    150  CA  ILE    22      -3.597   5.843   1.889  1.00  0.00
ATOM    151  CB  ILE    22      -2.929   5.094   3.058  1.00  0.00
ATOM    152  CG1 ILE    22      -3.955   4.789   4.151  1.00  0.00
ATOM    153  CG2 ILE    22      -1.816   5.935   3.663  1.00  0.00
ATOM    154  CD1 ILE    22      -3.451   3.838   5.215  1.00  0.00
ATOM    155  O   ILE    22      -2.284   5.342  -0.058  1.00  0.00
ATOM    156  C   ILE    22      -2.556   6.167   0.837  1.00  0.00
ATOM    157  N   ILE    23      -1.975   7.363   0.920  1.00  0.00
ATOM    158  CA  ILE    23      -0.924   7.748   0.001  1.00  0.00
ATOM    159  CB  ILE    23      -1.374   8.896  -0.922  1.00  0.00
ATOM    160  CG1 ILE    23      -2.579   8.465  -1.761  1.00  0.00
ATOM    161  CG2 ILE    23      -0.248   9.293  -1.864  1.00  0.00
ATOM    162  CD1 ILE    23      -3.215   9.593  -2.543  1.00  0.00
ATOM    163  O   ILE    23       0.149   9.078   1.672  1.00  0.00
ATOM    164  C   ILE    23       0.283   8.210   0.805  1.00  0.00
ATOM    165  N   GLU    24       1.446   7.629   0.520  1.00  0.00
ATOM    166  CA  GLU    24       2.701   8.019   1.177  1.00  0.00
ATOM    167  CB  GLU    24       3.612   6.803   1.356  1.00  0.00
ATOM    168  CG  GLU    24       4.909   7.102   2.091  1.00  0.00
ATOM    169  CD  GLU    24       5.771   5.869   2.277  1.00  0.00
ATOM    170  OE1 GLU    24       5.376   4.789   1.790  1.00  0.00
ATOM    171  OE2 GLU    24       6.841   5.983   2.911  1.00  0.00
ATOM    172  O   GLU    24       3.938   8.756  -0.759  1.00  0.00
ATOM    173  C   GLU    24       3.423   9.055   0.325  1.00  0.00
ATOM    174  N   LEU    25       3.456  10.283   0.819  1.00  0.00
ATOM    175  CA  LEU    25       4.023  11.369   0.061  1.00  0.00
ATOM    176  CB  LEU    25       3.015  12.514  -0.072  1.00  0.00
ATOM    177  CG  LEU    25       3.496  13.755  -0.826  1.00  0.00
ATOM    178  CD1 LEU    25       3.831  13.411  -2.270  1.00  0.00
ATOM    179  CD2 LEU    25       2.420  14.830  -0.831  1.00  0.00
ATOM    180  O   LEU    25       5.177  12.525   1.825  1.00  0.00
ATOM    181  C   LEU    25       5.283  11.888   0.782  1.00  0.00
ATOM    182  N   ASP    26       6.478  11.623   0.229  1.00  0.00
ATOM    183  CA  ASP    26       7.665  12.072   0.949  1.00  0.00
ATOM    184  CB  ASP    26       8.931  11.528   0.286  1.00  0.00
ATOM    185  CG  ASP    26      10.187  11.865   1.064  1.00  0.00
ATOM    186  OD1 ASP    26      10.078  12.561   2.097  1.00  0.00
ATOM    187  OD2 ASP    26      11.281  11.432   0.644  1.00  0.00
ATOM    188  O   ASP    26       7.489  14.238  -0.098  1.00  0.00
ATOM    189  C   ASP    26       7.714  13.610   0.938  1.00  0.00
ATOM    190  N   THR    27       7.968  14.200   2.101  1.00  0.00
ATOM    191  CA  THR    27       7.801  15.634   2.275  1.00  0.00
ATOM    192  CB  THR    27       6.352  15.991   2.656  1.00  0.00
ATOM    193  CG2 THR    27       5.391  15.566   1.555  1.00  0.00
ATOM    194  OG1 THR    27       5.995  15.317   3.869  1.00  0.00
ATOM    195  O   THR    27       8.407  15.971   4.559  1.00  0.00
ATOM    196  C   THR    27       8.724  16.109   3.379  1.00  0.00
ATOM    200  N   LEU    30       8.455  19.406   7.004  1.00  0.00
ATOM    201  CA  LEU    30       7.876  19.346   8.349  1.00  0.00
ATOM    202  CB  LEU    30       7.057  18.065   8.524  1.00  0.00
ATOM    203  CG  LEU    30       5.787  17.954   7.679  1.00  0.00
ATOM    204  CD1 LEU    30       5.141  16.587   7.858  1.00  0.00
ATOM    205  CD2 LEU    30       4.776  19.014   8.085  1.00  0.00
ATOM    206  O   LEU    30       8.616  19.502  10.625  1.00  0.00
ATOM    207  C   LEU    30       8.939  19.360   9.451  1.00  0.00
ATOM    208  N   THR    31      10.200  19.220   9.061  1.00  0.00
ATOM    209  CA  THR    31      11.314  19.264  10.001  1.00  0.00
ATOM    210  CB  THR    31      11.607  17.874  10.596  1.00  0.00
ATOM    211  CG2 THR    31      12.123  16.932   9.520  1.00  0.00
ATOM    212  OG1 THR    31      12.596  17.992  11.625  1.00  0.00
ATOM    213  O   THR    31      12.712  19.633   8.094  1.00  0.00
ATOM    214  C   THR    31      12.581  19.750   9.312  1.00  0.00
ATOM    215  N   SER    32      13.491  20.312  10.107  1.00  0.00
ATOM    216  CA  SER    32      14.836  20.662   9.664  1.00  0.00
ATOM    217  CB  SER    32      15.268  22.001  10.266  1.00  0.00
ATOM    218  OG  SER    32      15.351  21.922  11.678  1.00  0.00
ATOM    219  O   SER    32      16.987  19.605   9.593  1.00  0.00
ATOM    220  C   SER    32      15.857  19.608  10.083  1.00  0.00
ATOM    221  N   LEU    33      15.446  18.714  10.992  1.00  0.00
ATOM    222  CA  LEU    33      16.318  17.690  11.580  1.00  0.00
ATOM    223  CB  LEU    33      15.904  17.399  13.023  1.00  0.00
ATOM    224  CG  LEU    33      15.942  18.584  13.992  1.00  0.00
ATOM    225  CD1 LEU    33      15.481  18.161  15.377  1.00  0.00
ATOM    226  CD2 LEU    33      17.354  19.137  14.108  1.00  0.00
ATOM    227  O   LEU    33      15.646  15.452  11.232  1.00  0.00
ATOM    228  C   LEU    33      16.177  16.447  10.743  1.00  0.00
ATOM    229  N   PHE    34      16.656  16.489   9.503  1.00  0.00
ATOM    230  CA  PHE    34      16.333  15.438   8.551  1.00  0.00
ATOM    231  CB  PHE    34      16.404  15.972   7.119  1.00  0.00
ATOM    232  CG  PHE    34      15.781  15.060   6.101  1.00  0.00
ATOM    233  CD1 PHE    34      14.409  14.894   6.046  1.00  0.00
ATOM    234  CD2 PHE    34      16.570  14.367   5.197  1.00  0.00
ATOM    235  CE1 PHE    34      13.837  14.056   5.108  1.00  0.00
ATOM    236  CE2 PHE    34      15.996  13.529   4.260  1.00  0.00
ATOM    237  CZ  PHE    34      14.637  13.370   4.214  1.00  0.00
ATOM    238  O   PHE    34      18.430  14.327   9.006  1.00  0.00
ATOM    239  C   PHE    34      17.260  14.223   8.600  1.00  0.00
ATOM    243  N   SER    44      19.285  10.434   3.360  1.00  0.00
ATOM    244  CA  SER    44      18.291  10.013   2.359  1.00  0.00
ATOM    245  CB  SER    44      18.695  10.501   0.966  1.00  0.00
ATOM    246  OG  SER    44      19.892   9.875   0.532  1.00  0.00
ATOM    247  O   SER    44      16.987   8.059   1.939  1.00  0.00
ATOM    248  C   SER    44      18.091   8.485   2.232  1.00  0.00
ATOM    249  N   ASN    45      19.147   7.695   2.445  1.00  0.00
ATOM    250  CA  ASN    45      19.053   6.236   2.401  1.00  0.00
ATOM    251  CB  ASN    45      20.435   5.605   2.578  1.00  0.00
ATOM    252  CG  ASN    45      21.312   5.766   1.351  1.00  0.00
ATOM    253  ND2 ASN    45      22.619   5.630   1.537  1.00  0.00
ATOM    254  OD1 ASN    45      20.817   6.012   0.251  1.00  0.00
ATOM    255  O   ASN    45      17.288   4.848   3.273  1.00  0.00
ATOM    256  C   ASN    45      18.141   5.708   3.515  1.00  0.00
ATOM    257  N   ARG    46      18.318   6.243   4.724  1.00  0.00
ATOM    258  CA  ARG    46      17.460   5.914   5.855  1.00  0.00
ATOM    259  CB  ARG    46      18.001   6.539   7.141  1.00  0.00
ATOM    260  CG  ARG    46      19.277   5.893   7.656  1.00  0.00
ATOM    261  CD  ARG    46      19.802   6.611   8.889  1.00  0.00
ATOM    262  NE  ARG    46      21.031   6.003   9.394  1.00  0.00
ATOM    263  CZ  ARG    46      21.738   6.484  10.412  1.00  0.00
ATOM    264  NH1 ARG    46      22.843   5.865  10.803  1.00  0.00
ATOM    265  NH2 ARG    46      21.338   7.583  11.037  1.00  0.00
ATOM    266  O   ARG    46      15.075   5.718   5.882  1.00  0.00
ATOM    267  C   ARG    46      16.035   6.439   5.627  1.00  0.00
ATOM    268  N   GLN    47      15.896   7.670   5.119  1.00  0.00
ATOM    269  CA  GLN    47      14.563   8.178   4.744  1.00  0.00
ATOM    270  CB  GLN    47      14.685   9.521   4.021  1.00  0.00
ATOM    271  CG  GLN    47      13.353  10.146   3.645  1.00  0.00
ATOM    272  CD  GLN    47      12.561  10.605   4.854  1.00  0.00
ATOM    273  OE1 GLN    47      13.115  11.195   5.782  1.00  0.00
ATOM    274  NE2 GLN    47      11.261  10.335   4.845  1.00  0.00
ATOM    275  O   GLN    47      12.666   6.864   4.065  1.00  0.00
ATOM    276  C   GLN    47      13.810   7.212   3.805  1.00  0.00
ATOM    277  N   VAL    48      14.463   6.766   2.730  1.00  0.00
ATOM    278  CA  VAL    48      13.841   5.835   1.787  1.00  0.00
ATOM    279  CB  VAL    48      14.770   5.532   0.596  1.00  0.00
ATOM    280  CG1 VAL    48      14.190   4.419  -0.262  1.00  0.00
ATOM    281  CG2 VAL    48      14.941   6.768  -0.273  1.00  0.00
ATOM    282  O   VAL    48      12.437   3.943   2.103  1.00  0.00
ATOM    283  C   VAL    48      13.490   4.494   2.407  1.00  0.00
ATOM    284  N   ALA    50      14.394   3.982   3.239  1.00  0.00
ATOM    285  CA  ALA    50      14.195   2.758   4.021  1.00  0.00
ATOM    286  CB  ALA    50      15.356   2.547   4.980  1.00  0.00
ATOM    287  O   ALA    50      12.057   1.979   4.748  1.00  0.00
ATOM    288  C   ALA    50      12.909   2.855   4.829  1.00  0.00
ATOM    289  N   LEU    51      12.773   3.929   5.603  1.00  0.00
ATOM    290  CA  LEU    51      11.600   4.115   6.446  1.00  0.00
ATOM    291  CB  LEU    51      11.790   5.320   7.370  1.00  0.00
ATOM    292  CG  LEU    51      12.837   5.168   8.473  1.00  0.00
ATOM    293  CD1 LEU    51      13.050   6.489   9.199  1.00  0.00
ATOM    294  CD2 LEU    51      12.397   4.132   9.496  1.00  0.00
ATOM    295  O   LEU    51       9.271   3.809   5.978  1.00  0.00
ATOM    296  C   LEU    51      10.313   4.362   5.653  1.00  0.00
ATOM    297  N   ALA    52      10.397   5.166   4.598  1.00  0.00
ATOM    298  CA  ALA    52       9.261   5.408   3.729  1.00  0.00
ATOM    299  CB  ALA    52       9.657   6.323   2.581  1.00  0.00
ATOM    300  O   ALA    52       7.534   3.871   3.068  1.00  0.00
ATOM    301  C   ALA    52       8.749   4.088   3.146  1.00  0.00
ATOM    302  N   ASN    53       9.680   3.214   2.760  1.00  0.00
ATOM    303  CA  ASN    53       9.311   1.900   2.229  1.00  0.00
ATOM    304  CB  ASN    53      10.542   1.187   1.664  1.00  0.00
ATOM    305  CG  ASN    53      11.014   1.789   0.355  1.00  0.00
ATOM    306  ND2 ASN    53      12.274   1.547   0.015  1.00  0.00
ATOM    307  OD1 ASN    53      10.254   2.466  -0.339  1.00  0.00
ATOM    308  O   ASN    53       7.687   0.343   3.054  1.00  0.00
ATOM    309  C   ASN    53       8.702   0.985   3.300  1.00  0.00
ATOM    310  N   SER    54       9.303   0.949   4.482  1.00  0.00
ATOM    311  CA  SER    54       8.758   0.178   5.605  1.00  0.00
ATOM    312  CB  SER    54       9.581   0.422   6.871  1.00  0.00
ATOM    313  OG  SER    54      10.899  -0.079   6.727  1.00  0.00
ATOM    314  O   SER    54       6.442  -0.295   6.144  1.00  0.00
ATOM    315  C   SER    54       7.305   0.571   5.903  1.00  0.00
ATOM    316  N   VAL    55       7.050   1.881   5.904  1.00  0.00
ATOM    317  CA  VAL    55       5.713   2.404   6.187  1.00  0.00
ATOM    318  CB  VAL    55       5.718   3.940   6.284  1.00  0.00
ATOM    319  CG1 VAL    55       4.296   4.471   6.392  1.00  0.00
ATOM    320  CG2 VAL    55       6.493   4.394   7.511  1.00  0.00
ATOM    321  O   VAL    55       3.680   1.425   5.359  1.00  0.00
ATOM    322  C   VAL    55       4.735   2.008   5.083  1.00  0.00
ATOM    323  N   GLN    56       5.119   2.292   3.842  1.00  0.00
ATOM    324  CA  GLN    56       4.368   1.895   2.648  1.00  0.00
ATOM    325  CB  GLN    56       5.196   2.150   1.387  1.00  0.00
ATOM    326  CG  GLN    56       4.475   1.808   0.092  1.00  0.00
ATOM    327  CD  GLN    56       5.317   2.095  -1.136  1.00  0.00
ATOM    328  OE1 GLN    56       6.481   2.476  -1.027  1.00  0.00
ATOM    329  NE2 GLN    56       4.727   1.911  -2.312  1.00  0.00
ATOM    330  O   GLN    56       2.802   0.045   2.532  1.00  0.00
ATOM    331  C   GLN    56       3.987   0.394   2.651  1.00  0.00
ATOM    332  N   VAL    57       4.986  -0.472   2.803  1.00  0.00
ATOM    333  CA  VAL    57       4.751  -1.928   2.847  1.00  0.00
ATOM    334  CB  VAL    57       6.070  -2.709   2.987  1.00  0.00
ATOM    335  CG1 VAL    57       5.793  -4.184   3.230  1.00  0.00
ATOM    336  CG2 VAL    57       6.904  -2.578   1.722  1.00  0.00
ATOM    337  O   VAL    57       2.943  -3.156   3.857  1.00  0.00
ATOM    338  C   VAL    57       3.867  -2.342   4.019  1.00  0.00
ATOM    339  N   LYS    58       4.160  -1.777   5.192  1.00  0.00
ATOM    340  CA  LYS    58       3.432  -2.073   6.410  1.00  0.00
ATOM    341  CB  LYS    58       3.961  -1.227   7.569  1.00  0.00
ATOM    342  CG  LYS    58       5.358  -1.605   8.028  1.00  0.00
ATOM    343  CD  LYS    58       5.380  -2.992   8.651  1.00  0.00
ATOM    344  CE  LYS    58       6.769  -3.350   9.154  1.00  0.00
ATOM    345  NZ  LYS    58       6.820  -4.733   9.703  1.00  0.00
ATOM    346  O   LYS    58       1.116  -2.532   6.790  1.00  0.00
ATOM    347  C   LYS    58       1.947  -1.789   6.276  1.00  0.00
ATOM    348  N   LEU    59       1.632  -0.705   5.578  1.00  0.00
ATOM    349  CA  LEU    59       0.260  -0.253   5.361  1.00  0.00
ATOM    350  CB  LEU    59       0.247   1.152   4.758  1.00  0.00
ATOM    351  CG  LEU    59       0.716   2.287   5.671  1.00  0.00
ATOM    352  CD1 LEU    59       0.823   3.592   4.897  1.00  0.00
ATOM    353  CD2 LEU    59      -0.263   2.494   6.817  1.00  0.00
ATOM    354  O   LEU    59      -1.690  -1.407   4.591  1.00  0.00
ATOM    355  C   LEU    59      -0.504  -1.174   4.408  1.00  0.00
ATOM    356  N   LYS    60       0.188  -1.691   3.400  1.00  0.00
ATOM    357  CA  LYS    60      -0.396  -2.716   2.513  1.00  0.00
ATOM    358  CB  LYS    60       0.553  -3.024   1.353  1.00  0.00
ATOM    359  CG  LYS    60       0.004  -4.027   0.351  1.00  0.00
ATOM    360  CD  LYS    60       0.955  -4.215  -0.820  1.00  0.00
ATOM    361  CE  LYS    60       0.417  -5.236  -1.809  1.00  0.00
ATOM    362  NZ  LYS    60       1.349  -5.447  -2.951  1.00  0.00
ATOM    363  O   LYS    60      -1.694  -4.675   3.059  1.00  0.00
ATOM    364  C   LYS    60      -0.660  -4.025   3.265  1.00  0.00
ATOM    365  N   GLU    61       0.248  -4.376   4.165  1.00  0.00
ATOM    366  CA  GLU    61       0.113  -5.604   4.957  1.00  0.00
ATOM    367  CB  GLU    61       1.377  -5.850   5.783  1.00  0.00
ATOM    368  CG  GLU    61       2.593  -6.238   4.956  1.00  0.00
ATOM    369  CD  GLU    61       3.842  -6.402   5.800  1.00  0.00
ATOM    370  OE1 GLU    61       3.766  -6.176   7.025  1.00  0.00
ATOM    371  OE2 GLU    61       4.898  -6.759   5.235  1.00  0.00
ATOM    372  O   GLU    61      -1.564  -6.584   6.352  1.00  0.00
ATOM    373  C   GLU    61      -1.060  -5.548   5.927  1.00  0.00
ATOM    374  N   ALA    62      -1.524  -4.335   6.226  1.00  0.00
ATOM    375  CA  ALA    62      -2.739  -4.126   7.018  1.00  0.00
ATOM    376  CB  ALA    62      -2.669  -2.799   7.757  1.00  0.00
ATOM    377  O   ALA    62      -5.099  -3.924   6.747  1.00  0.00
ATOM    378  C   ALA    62      -4.023  -4.100   6.198  1.00  0.00
ATOM    379  N   GLY    63      -3.910  -4.252   4.881  1.00  0.00
ATOM    380  CA  GLY    63      -5.089  -4.351   4.016  1.00  0.00
ATOM    381  O   GLY    63      -6.712  -3.045   2.838  1.00  0.00
ATOM    382  C   GLY    63      -5.603  -3.067   3.400  1.00  0.00
ATOM    386  N   ILE    66      -2.748   1.323  -0.962  1.00  0.00
ATOM    387  CA  ILE    66      -1.715   2.325  -0.672  1.00  0.00
ATOM    388  CB  ILE    66      -0.666   1.783   0.316  1.00  0.00
ATOM    389  CG1 ILE    66       0.240   2.915   0.806  1.00  0.00
ATOM    390  CG2 ILE    66       0.201   0.727  -0.354  1.00  0.00
ATOM    391  CD1 ILE    66       1.155   2.517   1.944  1.00  0.00
ATOM    392  O   ILE    66      -0.624   1.845  -2.768  1.00  0.00
ATOM    393  C   ILE    66      -1.006   2.713  -1.959  1.00  0.00
ATOM    394  N   VAL    67      -0.866   4.022  -2.159  1.00  0.00
ATOM    395  CA  VAL    67      -0.068   4.554  -3.247  1.00  0.00
ATOM    396  CB  VAL    67      -0.882   5.526  -4.121  1.00  0.00
ATOM    397  CG1 VAL    67      -2.082   4.815  -4.732  1.00  0.00
ATOM    398  CG2 VAL    67      -1.389   6.694  -3.290  1.00  0.00
ATOM    399  O   VAL    67       1.168   5.532  -1.454  1.00  0.00
ATOM    400  C   VAL    67       1.115   5.296  -2.664  1.00  0.00
ATOM    401  N   GLY    68       2.076   5.633  -3.511  1.00  0.00
ATOM    402  CA  GLY    68       3.231   6.434  -3.095  1.00  0.00
ATOM    403  O   GLY    68       3.499   7.114  -5.386  1.00  0.00
ATOM    404  C   GLY    68       3.757   7.348  -4.203  1.00  0.00
ATOM    405  N   SER    69       4.497   8.386  -3.803  1.00  0.00
ATOM    406  CA  SER    69       5.280   9.187  -4.730  1.00  0.00
ATOM    407  CB  SER    69       5.028  10.677  -4.492  1.00  0.00
ATOM    408  OG  SER    69       3.657  10.996  -4.662  1.00  0.00
ATOM    409  O   SER    69       7.117   8.565  -3.342  1.00  0.00
ATOM    410  C   SER    69       6.741   8.854  -4.477  1.00  0.00
TER
END



