
PFRMAT TS
TARGET T0354
AUTHOR SAM_T06_server
REMARK   6 
REMARK   6 T0354 model 3 Thu Jun 29 13:30:28 2006
METHOD The SAM-T06 server uses methods similar to SAM_T04 in CASP6 and
METHOD the SAM-T02 method in CASP5.
METHOD 
METHOD We start with a fully automated method:
METHOD    
METHOD     Use the SAM-T2K and SAM-T04 methods for finding homologs of the
METHOD       target and aligning them.
METHOD 
METHOD     Make local structure predictions using neural nets and the
METHOD       multiple alignments.  Different neural nets are used for the
METHOD       SAM-T2K alignments and the SAM-T04 alignments.
METHOD       We currently use 8 local-structure alphabets: 
METHOD 	DSSP
METHOD 	STRIDE
METHOD 	STR2	an extended version of DSSP that splits the beta strands
METHOD 		into multiple classes (parallel/antiparallel/mixed,
METHOD 					edge/center)
METHOD 	ALPHA	an discretization of the alpha torsion angle:
METHOD 		CA(i-i), CA(i), CA(i+1), CA(i+2)
METHOD 	BYS	a discretization of Ramachandran plots, due to Bystroff
METHOD 	CB_burial_14_7	a 7-state discretization of the number of C_beta
METHOD 		atoms in a 14 Angstrom radius sphere around the C_beta.
METHOD 	near-backbone-11 an 11-state discretization of the number of
METHOD 	      residues (represented by near-backbone points) in a 
METHOD 	      9.65 Angstrom radius sphere around the sidechain proxy
METHOD 	      spot for the residue.
METHOD 	DSSP_EHL2	CASP's collapse of the DSSP alphabet
METHOD 			DSSP_EHL2 is not predicted directly by a
METHOD 			neural net, but is computed as a weighted
METHOD 			average of the other backbone alphabet predictions. 
METHOD     
METHOD     We make 2-track HMMs with each alphabet (1.0 amino acid + 0.3 local structure)
METHOD       and use them to score a template library of 6400 (t04) or 9900 (t2k) templates
METHOD       We also used a single-track HMM to score not just the template
METHOD       library, but a non-redundant copy of the entire PDB.
METHOD 
METHOD     We also made a few 3-track HMMs (AA, str2, CB_burial_14_7 and 
METHOD       AA, str2, near-backbone-11) for finding and aligning more remote
METHOD       homologs.
METHOD     
METHOD     One-track HMMs built from the template library multiple alignments
METHOD        were used to score the target sequence (for early targets, only
METHOD        t2k template library was searched this way).
METHOD 
METHOD     All the logs of e-values were combined in a weighted average (with
METHOD        rather arbitrary weights, since we did not have time to
METHOD        optimize them), and the best templates ranked.  Ranking was
METHOD        separate for predictions from the t2k and t04 multiple alignments.
METHOD     
METHOD     Alignments of the target to the top templates were made using
METHOD       several different alignment methods (mainly using the SAM hmmscore
METHOD       program, but a few alignments were made with Bob Edgar's MUSCLE
METHOD       profile-profile aligner).
METHOD 
METHOD     Generate fragments (short 9-residue alignments for each position)
METHOD       using SAM's "fragfinder" program and the 3-track HMM.
METHOD 
METHOD     Then the "undertaker" program (named because it optimizes burial)
METHOD       is used to try to combine the alignments and the fragments into
METHOD       a consistent 3D model.  No single alignment or parent template
METHOD       was used, though in many cases one had much more influence than
METHOD       the others.  The alignment scores were not passed to undertaker,
METHOD       but were used only to pick the set of alignments and fragments
METHOD       that undertaker would see.  Helix and strand constraints
METHOD       generated from the secondary-structure predictions are passed to
METHOD       undertaker to use in the cost function.
METHOD 
METHOD     One important change in this server over previous methods is that
METHOD     sheet constraints are extracted from the top few alignments and
METHOD     passed to undertaker. 
METHOD -------------
MODEL  3
PARENT N/A
ATOM      2  N   LYS    20     -10.250   3.593  11.961  1.00  0.00
ATOM      3  CA  LYS    20      -9.817   4.274  10.753  1.00  0.00
ATOM      4  CB  LYS    20      -8.488   4.993  10.992  1.00  0.00
ATOM      5  CG  LYS    20      -8.577   6.152  11.972  1.00  0.00
ATOM      6  CD  LYS    20      -7.231   6.838  12.140  1.00  0.00
ATOM      7  CE  LYS    20      -7.303   7.947  13.177  1.00  0.00
ATOM      8  NZ  LYS    20      -5.995   8.640  13.340  1.00  0.00
ATOM      9  O   LYS    20      -9.072   2.176   9.921  1.00  0.00
ATOM     10  C   LYS    20      -9.648   3.223   9.667  1.00  0.00
ATOM     11  N   ASP    21     -10.137   3.499   8.436  1.00  0.00
ATOM     12  CA  ASP    21     -10.055   2.555   7.305  1.00  0.00
ATOM     13  CB  ASP    21     -10.792   3.112   6.086  1.00  0.00
ATOM     14  CG  ASP    21     -12.299   3.082   6.252  1.00  0.00
ATOM     15  OD1 ASP    21     -12.777   2.427   7.203  1.00  0.00
ATOM     16  OD2 ASP    21     -13.000   3.712   5.434  1.00  0.00
ATOM     17  O   ASP    21      -8.545   1.162   6.095  1.00  0.00
ATOM     18  C   ASP    21      -8.691   2.189   6.779  1.00  0.00
ATOM     19  N   ILE    22      -7.683   2.996   7.101  1.00  0.00
ATOM     20  CA  ILE    22      -6.355   2.694   6.603  1.00  0.00
ATOM     21  CB  ILE    22      -5.689   3.936   5.982  1.00  0.00
ATOM     22  CG1 ILE    22      -5.546   5.044   7.029  1.00  0.00
ATOM     23  CG2 ILE    22      -6.524   4.469   4.829  1.00  0.00
ATOM     24  CD1 ILE    22      -4.724   6.225   6.560  1.00  0.00
ATOM     25  O   ILE    22      -5.530   2.396   8.820  1.00  0.00
ATOM     26  C   ILE    22      -5.360   2.190   7.619  1.00  0.00
ATOM     27  N   ILE    23      -4.325   1.509   7.117  1.00  0.00
ATOM     28  CA  ILE    23      -3.230   1.019   7.933  1.00  0.00
ATOM     29  CB  ILE    23      -2.509  -0.162   7.257  1.00  0.00
ATOM     30  CG1 ILE    23      -3.464  -1.344   7.085  1.00  0.00
ATOM     31  CG2 ILE    23      -1.326  -0.616   8.101  1.00  0.00
ATOM     32  CD1 ILE    23      -2.908  -2.458   6.224  1.00  0.00
ATOM     33  O   ILE    23      -1.983   2.927   7.085  1.00  0.00
ATOM     34  C   ILE    23      -2.300   2.237   8.076  1.00  0.00
ATOM     35  N   GLU    24      -1.847   2.482   9.302  1.00  0.00
ATOM     36  CA  GLU    24      -0.983   3.629   9.594  1.00  0.00
ATOM     37  CB  GLU    24      -1.411   4.303  10.899  1.00  0.00
ATOM     38  CG  GLU    24      -0.560   5.500  11.288  1.00  0.00
ATOM     39  CD  GLU    24      -1.003   6.132  12.592  1.00  0.00
ATOM     40  OE1 GLU    24      -1.976   5.631  13.194  1.00  0.00
ATOM     41  OE2 GLU    24      -0.378   7.128  13.012  1.00  0.00
ATOM     42  O   GLU    24       0.806   2.408  10.634  1.00  0.00
ATOM     43  C   GLU    24       0.462   3.188   9.735  1.00  0.00
ATOM     44  N   LEU    25       1.300   3.686   8.831  1.00  0.00
ATOM     45  CA  LEU    25       2.713   3.346   8.782  1.00  0.00
ATOM     46  CB  LEU    25       3.100   2.861   7.384  1.00  0.00
ATOM     47  CG  LEU    25       4.576   2.516   7.171  1.00  0.00
ATOM     48  CD1 LEU    25       4.982   1.331   8.032  1.00  0.00
ATOM     49  CD2 LEU    25       4.838   2.158   5.716  1.00  0.00
ATOM     50  O   LEU    25       3.413   5.591   8.418  1.00  0.00
ATOM     51  C   LEU    25       3.478   4.616   9.135  1.00  0.00
ATOM     52  N   ASP    26       4.195   4.613  10.250  1.00  0.00
ATOM     53  CA  ASP    26       4.925   5.809  10.659  1.00  0.00
ATOM     54  CB  ASP    26       4.649   6.128  12.129  1.00  0.00
ATOM     55  CG  ASP    26       3.200   6.495  12.383  1.00  0.00
ATOM     56  OD1 ASP    26       2.689   7.406  11.699  1.00  0.00
ATOM     57  OD2 ASP    26       2.576   5.873  13.269  1.00  0.00
ATOM     58  O   ASP    26       6.985   4.613  10.854  1.00  0.00
ATOM     59  C   ASP    26       6.417   5.648  10.501  1.00  0.00
ATOM     60  N   THR    27       7.053   6.667   9.935  1.00  0.00
ATOM     61  CA  THR    27       8.495   6.650   9.775  1.00  0.00
ATOM     62  CB  THR    27       8.908   6.986   8.331  1.00  0.00
ATOM     63  CG2 THR    27       8.293   5.994   7.356  1.00  0.00
ATOM     64  OG1 THR    27       8.457   8.304   7.997  1.00  0.00
ATOM     65  O   THR    27       8.350   8.699  11.015  1.00  0.00
ATOM     66  C   THR    27       9.019   7.697  10.734  1.00  0.00
ATOM     67  N   SER    28      10.208   7.460  11.259  1.00  0.00
ATOM     68  CA  SER    28      10.780   8.410  12.186  1.00  0.00
ATOM     69  CB  SER    28      11.258   7.700  13.455  1.00  0.00
ATOM     70  OG  SER    28      10.173   7.103  14.143  1.00  0.00
ATOM     71  O   SER    28      12.613   8.483  10.665  1.00  0.00
ATOM     72  C   SER    28      11.955   9.083  11.509  1.00  0.00
ATOM     73  N   LYS    29      12.186  10.339  11.863  1.00  0.00
ATOM     74  CA  LYS    29      13.286  11.126  11.303  1.00  0.00
ATOM     75  CB  LYS    29      14.555  10.946  12.139  1.00  0.00
ATOM     76  CG  LYS    29      15.730  11.790  11.674  1.00  0.00
ATOM     77  CD  LYS    29      16.932  11.616  12.589  1.00  0.00
ATOM     78  CE  LYS    29      18.107  12.460  12.124  1.00  0.00
ATOM     79  NZ  LYS    29      19.291  12.301  13.013  1.00  0.00
ATOM     80  O   LYS    29      14.467   9.847   9.635  1.00  0.00
ATOM     81  C   LYS    29      13.663  10.756   9.862  1.00  0.00
ATOM     82  N   LEU    30      13.093  11.466   8.877  1.00  0.00
ATOM     83  CA  LEU    30      12.147  12.549   9.152  1.00  0.00
ATOM     84  CB  LEU    30      11.943  13.412   7.904  1.00  0.00
ATOM     85  CG  LEU    30      13.192  14.088   7.335  1.00  0.00
ATOM     86  CD1 LEU    30      12.864  14.824   6.045  1.00  0.00
ATOM     87  CD2 LEU    30      13.756  15.093   8.326  1.00  0.00
ATOM     88  O   LEU    30      10.483  10.814   9.274  1.00  0.00
ATOM     89  C   LEU    30      10.795  11.969   9.573  1.00  0.00
ATOM     90  N   THR    31      -2.217   3.672   4.507  1.00  0.00
ATOM     91  CA  THR    31      -2.360   2.704   3.428  1.00  0.00
ATOM     92  CB  THR    31      -1.378   1.528   3.588  1.00  0.00
ATOM     93  CG2 THR    31      -1.515   0.556   2.427  1.00  0.00
ATOM     94  OG1 THR    31      -0.035   2.027   3.621  1.00  0.00
ATOM     95  O   THR    31      -4.234   1.474   4.317  1.00  0.00
ATOM     96  C   THR    31      -3.763   2.106   3.369  1.00  0.00
ATOM     97  N   SER    32      -4.430   2.314   2.247  1.00  0.00
ATOM     98  CA  SER    32      -5.788   1.814   2.087  1.00  0.00
ATOM     99  CB  SER    32      -6.657   2.845   1.365  1.00  0.00
ATOM    100  OG  SER    32      -6.197   3.065   0.043  1.00  0.00
ATOM    101  O   SER    32      -4.998   0.190   0.505  1.00  0.00
ATOM    102  C   SER    32      -5.896   0.521   1.281  1.00  0.00
ATOM    103  N   LEU    33      -6.981  -0.220   1.495  1.00  0.00
ATOM    104  CA  LEU    33      -7.204  -1.494   0.794  1.00  0.00
ATOM    105  CB  LEU    33      -8.590  -2.052   1.123  1.00  0.00
ATOM    106  CG  LEU    33      -8.804  -2.529   2.561  1.00  0.00
ATOM    107  CD1 LEU    33     -10.256  -2.922   2.787  1.00  0.00
ATOM    108  CD2 LEU    33      -7.932  -3.738   2.864  1.00  0.00
ATOM    109  O   LEU    33      -6.727  -2.260  -1.414  1.00  0.00
ATOM    110  C   LEU    33      -7.118  -1.340  -0.719  1.00  0.00
ATOM    111  N   PHE    34      -7.483  -0.177  -1.230  1.00  0.00
ATOM    112  CA  PHE    34      -7.435   0.072  -2.671  1.00  0.00
ATOM    113  CB  PHE    34      -8.152   1.380  -3.012  1.00  0.00
ATOM    114  CG  PHE    34      -9.647   1.305  -2.879  1.00  0.00
ATOM    115  CD1 PHE    34     -10.283   1.816  -1.760  1.00  0.00
ATOM    116  CD2 PHE    34     -10.415   0.724  -3.872  1.00  0.00
ATOM    117  CE1 PHE    34     -11.658   1.747  -1.638  1.00  0.00
ATOM    118  CE2 PHE    34     -11.790   0.654  -3.750  1.00  0.00
ATOM    119  CZ  PHE    34     -12.412   1.164  -2.639  1.00  0.00
ATOM    120  O   PHE    34      -5.839   0.300  -4.418  1.00  0.00
ATOM    121  C   PHE    34      -6.023   0.185  -3.208  1.00  0.00
ATOM    122  N   GLN    35      -5.028   0.182  -2.317  1.00  0.00
ATOM    123  CA  GLN    35      -3.648   0.317  -2.736  1.00  0.00
ATOM    124  CB  GLN    35      -3.453  -0.271  -4.135  1.00  0.00
ATOM    125  CG  GLN    35      -3.688  -1.770  -4.217  1.00  0.00
ATOM    126  CD  GLN    35      -3.527  -2.309  -5.625  1.00  0.00
ATOM    127  OE1 GLN    35      -3.194  -1.568  -6.550  1.00  0.00
ATOM    128  NE2 GLN    35      -3.763  -3.605  -5.792  1.00  0.00
ATOM    129  O   GLN    35      -2.056   2.105  -3.069  1.00  0.00
ATOM    130  C   GLN    35      -3.219   1.777  -2.777  1.00  0.00
ATOM    131  N   ARG    36      -4.172   2.662  -2.521  1.00  0.00
ATOM    132  CA  ARG    36      -3.859   4.073  -2.513  1.00  0.00
ATOM    133  CB  ARG    36      -5.139   4.908  -2.587  1.00  0.00
ATOM    134  CG  ARG    36      -5.896   4.769  -3.898  1.00  0.00
ATOM    135  CD  ARG    36      -7.202   5.545  -3.865  1.00  0.00
ATOM    136  NE  ARG    36      -8.176   4.938  -2.960  1.00  0.00
ATOM    137  CZ  ARG    36      -9.301   5.529  -2.570  1.00  0.00
ATOM    138  NH1 ARG    36     -10.126   4.901  -1.744  1.00  0.00
ATOM    139  NH2 ARG    36      -9.597   6.745  -3.008  1.00  0.00
ATOM    140  O   ARG    36      -3.534   3.848  -0.151  1.00  0.00
ATOM    141  C   ARG    36      -3.124   4.331  -1.210  1.00  0.00
ATOM    142  N   MET    37      -2.032   5.070  -1.283  1.00  0.00
ATOM    143  CA  MET    37      -1.310   5.398  -0.066  1.00  0.00
ATOM    144  CB  MET    37       0.108   4.828  -0.114  1.00  0.00
ATOM    145  CG  MET    37       0.923   5.086   1.143  1.00  0.00
ATOM    146  SD  MET    37       2.574   4.367   1.062  1.00  0.00
ATOM    147  CE  MET    37       2.192   2.623   1.220  1.00  0.00
ATOM    148  O   MET    37      -0.950   7.650  -0.900  1.00  0.00
ATOM    149  C   MET    37      -1.241   6.938   0.065  1.00  0.00
ATOM    150  N   ILE    38      -1.555   7.457   1.246  1.00  0.00
ATOM    151  CA  ILE    38      -1.457   8.894   1.459  1.00  0.00
ATOM    152  CB  ILE    38      -2.712   9.448   2.161  1.00  0.00
ATOM    153  CG1 ILE    38      -3.954   9.207   1.300  1.00  0.00
ATOM    154  CG2 ILE    38      -2.573  10.943   2.400  1.00  0.00
ATOM    155  CD1 ILE    38      -5.256   9.509   2.009  1.00  0.00
ATOM    156  O   ILE    38      -0.114   8.482   3.390  1.00  0.00
ATOM    157  C   ILE    38      -0.223   9.100   2.337  1.00  0.00
ATOM    158  N   VAL    39       0.695   9.960   1.899  1.00  0.00
ATOM    159  CA  VAL    39       1.924  10.235   2.643  1.00  0.00
ATOM    160  CB  VAL    39       3.175   9.978   1.782  1.00  0.00
ATOM    161  CG1 VAL    39       4.436  10.313   2.561  1.00  0.00
ATOM    162  CG2 VAL    39       3.242   8.517   1.364  1.00  0.00
ATOM    163  O   VAL    39       1.726  12.606   2.266  1.00  0.00
ATOM    164  C   VAL    39       1.926  11.694   3.080  1.00  0.00
ATOM    165  N   ALA    40       2.151  11.914   4.371  1.00  0.00
ATOM    166  CA  ALA    40       2.126  13.252   4.910  1.00  0.00
ATOM    167  CB  ALA    40       0.877  13.462   5.751  1.00  0.00
ATOM    168  O   ALA    40       3.896  12.588   6.392  1.00  0.00
ATOM    169  C   ALA    40       3.340  13.521   5.795  1.00  0.00
ATOM    170  N   THR    41       3.761  14.782   5.855  1.00  0.00
ATOM    171  CA  THR    41       4.902  15.136   6.686  1.00  0.00
ATOM    172  CB  THR    41       5.429  13.918   7.468  1.00  0.00
ATOM    173  CG2 THR    41       6.642  14.306   8.300  1.00  0.00
ATOM    174  OG1 THR    41       4.404  13.427   8.341  1.00  0.00
ATOM    175  O   THR    41       6.885  16.468   6.590  1.00  0.00
ATOM    176  C   THR    41       6.130  15.690   5.983  1.00  0.00
ATOM    177  N   GLY    42       6.350  15.328   4.715  1.00  0.00
ATOM    178  CA  GLY    42       7.533  15.816   3.989  1.00  0.00
ATOM    179  O   GLY    42       6.359  17.875   3.568  1.00  0.00
ATOM    180  C   GLY    42       7.455  17.328   3.767  1.00  0.00
ATOM    181  N   ASP    43       8.602  18.006   3.804  1.00  0.00
ATOM    182  CA  ASP    43       8.630  19.453   3.618  1.00  0.00
ATOM    183  CB  ASP    43       9.409  20.123   4.752  1.00  0.00
ATOM    184  CG  ASP    43       8.771  19.903   6.108  1.00  0.00
ATOM    185  OD1 ASP    43       7.553  20.146   6.238  1.00  0.00
ATOM    186  OD2 ASP    43       9.488  19.488   7.042  1.00  0.00
ATOM    187  O   ASP    43       9.493  21.046   2.121  1.00  0.00
ATOM    188  C   ASP    43       9.277  19.865   2.334  1.00  0.00
ATOM    189  N   SER    44       9.604  18.889   1.493  1.00  0.00
ATOM    190  CA  SER    44      10.201  19.139   0.182  1.00  0.00
ATOM    191  CB  SER    44      11.710  19.362   0.315  1.00  0.00
ATOM    192  OG  SER    44      12.365  18.177   0.734  1.00  0.00
ATOM    193  O   SER    44       9.689  16.830  -0.270  1.00  0.00
ATOM    194  C   SER    44       9.963  17.942  -0.742  1.00  0.00
ATOM    195  N   ASN    45      10.072  18.155  -2.055  1.00  0.00
ATOM    196  CA  ASN    45       9.857  17.057  -2.992  1.00  0.00
ATOM    197  CB  ASN    45       9.965  17.556  -4.434  1.00  0.00
ATOM    198  CG  ASN    45       8.770  18.389  -4.853  1.00  0.00
ATOM    199  ND2 ASN    45       8.945  19.187  -5.901  1.00  0.00
ATOM    200  OD1 ASN    45       7.704  18.315  -4.243  1.00  0.00
ATOM    201  O   ASN    45      10.585  14.789  -2.751  1.00  0.00
ATOM    202  C   ASN    45      10.905  15.979  -2.765  1.00  0.00
ATOM    203  N   ARG    46      12.159  16.379  -2.578  1.00  0.00
ATOM    204  CA  ARG    46      13.205  15.388  -2.332  1.00  0.00
ATOM    205  CB  ARG    46      14.554  16.075  -2.109  1.00  0.00
ATOM    206  CG  ARG    46      15.147  16.698  -3.362  1.00  0.00
ATOM    207  CD  ARG    46      16.447  17.425  -3.056  1.00  0.00
ATOM    208  NE  ARG    46      17.016  18.053  -4.245  1.00  0.00
ATOM    209  CZ  ARG    46      18.109  18.810  -4.240  1.00  0.00
ATOM    210  NH1 ARG    46      18.553  19.341  -5.370  1.00  0.00
ATOM    211  NH2 ARG    46      18.753  19.035  -3.103  1.00  0.00
ATOM    212  O   ARG    46      13.064  13.320  -1.096  1.00  0.00
ATOM    213  C   ARG    46      12.889  14.557  -1.102  1.00  0.00
ATOM    214  N   GLN    47      12.414  15.235  -0.064  1.00  0.00
ATOM    215  CA  GLN    47      12.065  14.559   1.170  1.00  0.00
ATOM    216  CB  GLN    47      11.634  15.571   2.233  1.00  0.00
ATOM    217  CG  GLN    47      12.766  16.429   2.769  1.00  0.00
ATOM    218  CD  GLN    47      12.285  17.495   3.734  1.00  0.00
ATOM    219  OE1 GLN    47      11.083  17.660   3.942  1.00  0.00
ATOM    220  NE2 GLN    47      13.224  18.225   4.326  1.00  0.00
ATOM    221  O   GLN    47      10.895  12.459   1.440  1.00  0.00
ATOM    222  C   GLN    47      10.909  13.584   0.917  1.00  0.00
ATOM    223  N   VAL    48       9.939  14.026   0.125  1.00  0.00
ATOM    224  CA  VAL    48       8.791  13.206  -0.200  1.00  0.00
ATOM    225  CB  VAL    48       7.806  13.951  -1.118  1.00  0.00
ATOM    226  CG1 VAL    48       6.716  13.009  -1.605  1.00  0.00
ATOM    227  CG2 VAL    48       7.149  15.103  -0.373  1.00  0.00
ATOM    228  O   VAL    48       8.818  10.837  -0.555  1.00  0.00
ATOM    229  C   VAL    48       9.232  11.931  -0.918  1.00  0.00
ATOM    230  N   LYS    49      10.052  12.093  -1.955  1.00  0.00
ATOM    231  CA  LYS    49      10.539  10.957  -2.731  1.00  0.00
ATOM    232  CB  LYS    49      11.457  11.432  -3.859  1.00  0.00
ATOM    233  CG  LYS    49      10.738  12.169  -4.976  1.00  0.00
ATOM    234  CD  LYS    49      11.706  12.608  -6.062  1.00  0.00
ATOM    235  CE  LYS    49      10.990  13.368  -7.167  1.00  0.00
ATOM    236  NZ  LYS    49      11.932  13.834  -8.221  1.00  0.00
ATOM    237  O   LYS    49      11.135   8.767  -1.998  1.00  0.00
ATOM    238  C   LYS    49      11.325   9.979  -1.888  1.00  0.00
ATOM    239  N   ALA    50      12.196  10.477  -1.017  1.00  0.00
ATOM    240  CA  ALA    50      12.982   9.567  -0.191  1.00  0.00
ATOM    241  CB  ALA    50      13.994  10.342   0.637  1.00  0.00
ATOM    242  O   ALA    50      12.273   7.617   0.985  1.00  0.00
ATOM    243  C   ALA    50      12.075   8.802   0.744  1.00  0.00
ATOM    244  N   LEU    51      11.081   9.486   1.288  1.00  0.00
ATOM    245  CA  LEU    51      10.143   8.833   2.189  1.00  0.00
ATOM    246  CB  LEU    51       9.142   9.846   2.747  1.00  0.00
ATOM    247  CG  LEU    51       9.698  10.880   3.730  1.00  0.00
ATOM    248  CD1 LEU    51       8.648  11.927   4.061  1.00  0.00
ATOM    249  CD2 LEU    51      10.129  10.210   5.026  1.00  0.00
ATOM    250  O   LEU    51       9.204   6.644   1.983  1.00  0.00
ATOM    251  C   LEU    51       9.361   7.744   1.473  1.00  0.00
ATOM    252  N   ALA    52       8.882   8.039   0.274  1.00  0.00
ATOM    253  CA  ALA    52       8.101   7.055  -0.462  1.00  0.00
ATOM    254  CB  ALA    52       7.631   7.635  -1.788  1.00  0.00
ATOM    255  O   ALA    52       8.485   4.675  -0.558  1.00  0.00
ATOM    256  C   ALA    52       8.944   5.811  -0.747  1.00  0.00
ATOM    257  N   ASN    53      10.170   6.039  -1.206  1.00  0.00
ATOM    258  CA  ASN    53      11.083   4.931  -1.500  1.00  0.00
ATOM    259  CB  ASN    53      12.417   5.462  -2.027  1.00  0.00
ATOM    260  CG  ASN    53      12.313   5.992  -3.445  1.00  0.00
ATOM    261  ND2 ASN    53      13.271   6.824  -3.836  1.00  0.00
ATOM    262  OD1 ASN    53      11.381   5.657  -4.177  1.00  0.00
ATOM    263  O   ASN    53      11.349   2.911  -0.227  1.00  0.00
ATOM    264  C   ASN    53      11.330   4.141  -0.226  1.00  0.00
ATOM    265  N   SER    54      11.512   4.853   0.875  1.00  0.00
ATOM    266  CA  SER    54      11.759   4.170   2.130  1.00  0.00
ATOM    267  CB  SER    54      11.998   5.182   3.253  1.00  0.00
ATOM    268  OG  SER    54      13.203   5.900   3.042  1.00  0.00
ATOM    269  O   SER    54      10.683   2.139   2.827  1.00  0.00
ATOM    270  C   SER    54      10.544   3.314   2.479  1.00  0.00
ATOM    271  N   VAL    55       9.348   3.883   2.347  1.00  0.00
ATOM    272  CA  VAL    55       8.141   3.130   2.677  1.00  0.00
ATOM    273  CB  VAL    55       6.873   3.985   2.490  1.00  0.00
ATOM    274  CG1 VAL    55       5.626   3.128   2.645  1.00  0.00
ATOM    275  CG2 VAL    55       6.824   5.097   3.526  1.00  0.00
ATOM    276  O   VAL    55       7.787   0.783   2.281  1.00  0.00
ATOM    277  C   VAL    55       7.997   1.897   1.790  1.00  0.00
ATOM    278  N   GLN    56       8.118   2.101   0.484  1.00  0.00
ATOM    279  CA  GLN    56       7.976   1.007  -0.464  1.00  0.00
ATOM    280  CB  GLN    56       8.178   1.509  -1.894  1.00  0.00
ATOM    281  CG  GLN    56       7.050   2.389  -2.409  1.00  0.00
ATOM    282  CD  GLN    56       7.337   2.959  -3.784  1.00  0.00
ATOM    283  OE1 GLN    56       8.423   2.772  -4.330  1.00  0.00
ATOM    284  NE2 GLN    56       6.359   3.658  -4.349  1.00  0.00
ATOM    285  O   GLN    56       8.660  -1.274  -0.268  1.00  0.00
ATOM    286  C   GLN    56       8.996  -0.096  -0.208  1.00  0.00
ATOM    287  N   VAL    57      10.231   0.284   0.104  1.00  0.00
ATOM    288  CA  VAL    57      11.273  -0.706   0.373  1.00  0.00
ATOM    289  CB  VAL    57      12.586  -0.037   0.818  1.00  0.00
ATOM    290  CG1 VAL    57      13.588  -1.085   1.281  1.00  0.00
ATOM    291  CG2 VAL    57      13.203   0.743  -0.333  1.00  0.00
ATOM    292  O   VAL    57      10.853  -2.875   1.359  1.00  0.00
ATOM    293  C   VAL    57      10.797  -1.645   1.490  1.00  0.00
ATOM    294  N   LYS    58      10.302  -1.057   2.575  1.00  0.00
ATOM    295  CA  LYS    58       9.822  -1.855   3.711  1.00  0.00
ATOM    296  CB  LYS    58       9.364  -0.942   4.850  1.00  0.00
ATOM    297  CG  LYS    58       8.887  -1.686   6.088  1.00  0.00
ATOM    298  CD  LYS    58       8.515  -0.722   7.202  1.00  0.00
ATOM    299  CE  LYS    58       7.992  -1.463   8.421  1.00  0.00
ATOM    300  NZ  LYS    58       7.601  -0.529   9.514  1.00  0.00
ATOM    301  O   LYS    58       8.664  -3.960   3.619  1.00  0.00
ATOM    302  C   LYS    58       8.642  -2.752   3.354  1.00  0.00
ATOM    303  N   LEU    59       7.602  -2.173   2.766  1.00  0.00
ATOM    304  CA  LEU    59       6.457  -2.979   2.386  1.00  0.00
ATOM    305  CB  LEU    59       5.478  -2.157   1.547  1.00  0.00
ATOM    306  CG  LEU    59       4.713  -1.054   2.282  1.00  0.00
ATOM    307  CD1 LEU    59       3.908  -0.213   1.303  1.00  0.00
ATOM    308  CD2 LEU    59       3.754  -1.652   3.299  1.00  0.00
ATOM    309  O   LEU    59       6.451  -5.291   1.702  1.00  0.00
ATOM    310  C   LEU    59       6.958  -4.171   1.568  1.00  0.00
ATOM    311  N   LYS    60       7.963  -3.921   0.734  1.00  0.00
ATOM    312  CA  LYS    60       8.540  -4.979  -0.089  1.00  0.00
ATOM    313  CB  LYS    60       9.548  -4.399  -1.083  1.00  0.00
ATOM    314  CG  LYS    60      10.164  -5.427  -2.015  1.00  0.00
ATOM    315  CD  LYS    60      11.087  -4.770  -3.030  1.00  0.00
ATOM    316  CE  LYS    60      11.730  -5.804  -3.940  1.00  0.00
ATOM    317  NZ  LYS    60      12.681  -5.180  -4.902  1.00  0.00
ATOM    318  O   LYS    60       8.987  -7.179   0.726  1.00  0.00
ATOM    319  C   LYS    60       9.256  -5.992   0.806  1.00  0.00
ATOM    320  N   GLU    61      10.154  -5.517   1.663  1.00  0.00
ATOM    321  CA  GLU    61      10.882  -6.398   2.554  1.00  0.00
ATOM    322  CB  GLU    61      11.670  -5.587   3.585  1.00  0.00
ATOM    323  CG  GLU    61      12.852  -4.829   3.006  1.00  0.00
ATOM    324  CD  GLU    61      13.528  -3.935   4.026  1.00  0.00
ATOM    325  OE1 GLU    61      13.030  -3.856   5.169  1.00  0.00
ATOM    326  OE2 GLU    61      14.554  -3.312   3.684  1.00  0.00
ATOM    327  O   GLU    61      10.360  -8.412   3.749  1.00  0.00
ATOM    328  C   GLU    61       9.951  -7.334   3.316  1.00  0.00
ATOM    329  N   ALA    62       8.695  -6.943   3.482  1.00  0.00
ATOM    330  CA  ALA    62       7.781  -7.805   4.204  1.00  0.00
ATOM    331  CB  ALA    62       7.110  -7.038   5.334  1.00  0.00
ATOM    332  O   ALA    62       5.610  -8.772   3.961  1.00  0.00
ATOM    333  C   ALA    62       6.644  -8.412   3.400  1.00  0.00
ATOM    334  N   GLY    63       6.794  -8.511   2.086  1.00  0.00
ATOM    335  CA  GLY    63       5.733  -9.180   1.353  1.00  0.00
ATOM    336  O   GLY    63       4.537  -9.506  -0.663  1.00  0.00
ATOM    337  C   GLY    63       4.983  -8.679   0.138  1.00  0.00
ATOM    338  N   VAL    64       4.801  -7.374  -0.033  1.00  0.00
ATOM    339  CA  VAL    64       4.036  -6.950  -1.200  1.00  0.00
ATOM    340  CB  VAL    64       3.368  -5.581  -0.971  1.00  0.00
ATOM    341  CG1 VAL    64       2.683  -5.101  -2.241  1.00  0.00
ATOM    342  CG2 VAL    64       2.326  -5.675   0.133  1.00  0.00
ATOM    343  O   VAL    64       6.093  -6.524  -2.345  1.00  0.00
ATOM    344  C   VAL    64       4.905  -6.820  -2.432  1.00  0.00
ATOM    345  N   ASP    65       4.298  -7.063  -3.586  1.00  0.00
ATOM    346  CA  ASP    65       5.012  -6.982  -4.848  1.00  0.00
ATOM    347  CB  ASP    65       4.838  -8.275  -5.647  1.00  0.00
ATOM    348  CG  ASP    65       5.514  -9.462  -4.990  1.00  0.00
ATOM    349  OD1 ASP    65       6.328  -9.245  -4.067  1.00  0.00
ATOM    350  OD2 ASP    65       5.231 -10.607  -5.396  1.00  0.00
ATOM    351  O   ASP    65       3.291  -5.465  -5.492  1.00  0.00
ATOM    352  C   ASP    65       4.460  -5.823  -5.645  1.00  0.00
ATOM    353  N   ILE    66       5.304  -5.234  -6.490  1.00  0.00
ATOM    354  CA  ILE    66       4.884  -4.129  -7.335  1.00  0.00
ATOM    355  CB  ILE    66       5.715  -2.861  -7.061  1.00  0.00
ATOM    356  CG1 ILE    66       5.541  -2.414  -5.608  1.00  0.00
ATOM    357  CG2 ILE    66       5.272  -1.727  -7.972  1.00  0.00
ATOM    358  CD1 ILE    66       6.493  -1.315  -5.191  1.00  0.00
ATOM    359  O   ILE    66       6.126  -5.011  -9.205  1.00  0.00
ATOM    360  C   ILE    66       5.063  -4.522  -8.802  1.00  0.00
ATOM    361  N   VAL    67       4.021  -4.324  -9.600  1.00  0.00
ATOM    362  CA  VAL    67       4.102  -4.670 -11.013  1.00  0.00
ATOM    363  CB  VAL    67       2.703  -4.793 -11.646  1.00  0.00
ATOM    364  CG1 VAL    67       2.816  -5.021 -13.145  1.00  0.00
ATOM    365  CG2 VAL    67       1.944  -5.963 -11.038  1.00  0.00
ATOM    366  O   VAL    67       5.730  -3.883 -12.591  1.00  0.00
ATOM    367  C   VAL    67       4.874  -3.591 -11.756  1.00  0.00
ATOM    368  N   GLY    68       4.571  -2.338 -11.441  1.00  0.00
ATOM    369  CA  GLY    68       5.251  -1.240 -12.097  1.00  0.00
ATOM    370  O   GLY    68       5.303  -0.203  -9.950  1.00  0.00
ATOM    371  C   GLY    68       5.596  -0.114 -11.145  1.00  0.00
ATOM    372  N   SER    69       6.221   0.943 -11.670  1.00  0.00
ATOM    373  CA  SER    69       6.603   2.088 -10.852  1.00  0.00
ATOM    374  CB  SER    69       7.472   3.055 -11.657  1.00  0.00
ATOM    375  OG  SER    69       7.791   4.207 -10.897  1.00  0.00
ATOM    376  O   SER    69       4.545   3.297 -11.144  1.00  0.00
ATOM    377  C   SER    69       5.381   2.860 -10.355  1.00  0.00
ATOM    378  N   GLU    70       5.250   3.011  -9.035  1.00  0.00
ATOM    379  CA  GLU    70       4.108   3.745  -8.488  1.00  0.00
ATOM    380  CB  GLU    70       4.019   3.548  -6.973  1.00  0.00
ATOM    381  CG  GLU    70       2.808   4.205  -6.333  1.00  0.00
ATOM    382  CD  GLU    70       2.723   3.942  -4.842  1.00  0.00
ATOM    383  OE1 GLU    70       3.619   3.257  -4.308  1.00  0.00
ATOM    384  OE2 GLU    70       1.761   4.422  -4.207  1.00  0.00
ATOM    385  O   GLU    70       5.365   5.763  -8.723  1.00  0.00
ATOM    386  C   GLU    70       4.267   5.228  -8.783  1.00  0.00
ATOM    387  N   GLY    71       3.179   5.895  -9.121  1.00  0.00
ATOM    388  CA  GLY    71       3.272   7.318  -9.393  1.00  0.00
ATOM    389  O   GLY    71       2.127   7.625  -7.312  1.00  0.00
ATOM    390  C   GLY    71       2.929   8.077  -8.117  1.00  0.00
ATOM    391  N   HIS    72       3.533   9.244  -7.969  1.00  0.00
ATOM    392  CA  HIS    72       3.327  10.084  -6.807  1.00  0.00
ATOM    393  CB  HIS    72       4.668  10.440  -6.160  1.00  0.00
ATOM    394  CG  HIS    72       4.540  11.303  -4.944  1.00  0.00
ATOM    395  CD2 HIS    72       4.776  12.707  -4.638  1.00  0.00
ATOM    396  ND1 HIS    72       4.111  10.817  -3.728  1.00  0.00
ATOM    397  CE1 HIS    72       4.102  11.823  -2.834  1.00  0.00
ATOM    398  NE2 HIS    72       4.499  12.959  -3.372  1.00  0.00
ATOM    399  O   HIS    72       3.148  12.080  -8.064  1.00  0.00
ATOM    400  C   HIS    72       2.627  11.358  -7.228  1.00  0.00
ATOM    401  N   GLU    73       1.466  11.645  -6.656  1.00  0.00
ATOM    402  CA  GLU    73       0.767  12.872  -6.997  1.00  0.00
ATOM    403  CB  GLU    73      -0.619  12.558  -7.566  1.00  0.00
ATOM    404  CG  GLU    73      -1.423  13.788  -7.955  1.00  0.00
ATOM    405  CD  GLU    73      -2.773  13.437  -8.547  1.00  0.00
ATOM    406  OE1 GLU    73      -3.106  12.235  -8.596  1.00  0.00
ATOM    407  OE2 GLU    73      -3.499  14.366  -8.961  1.00  0.00
ATOM    408  O   GLU    73       0.064  13.339  -4.738  1.00  0.00
ATOM    409  C   GLU    73       0.583  13.766  -5.777  1.00  0.00
ATOM    410  N   SER    74       0.999  15.015  -5.898  1.00  0.00
ATOM    411  CA  SER    74       0.814  15.934  -4.789  1.00  0.00
ATOM    412  CB  SER    74       1.672  17.185  -4.982  1.00  0.00
ATOM    413  OG  SER    74       3.053  16.867  -4.947  1.00  0.00
ATOM    414  O   SER    74      -1.244  16.802  -5.693  1.00  0.00
ATOM    415  C   SER    74      -0.644  16.352  -4.705  1.00  0.00
ATOM    416  N   GLY    75      -1.208  16.184  -3.518  1.00  0.00
ATOM    417  CA  GLY    75      -2.592  16.557  -3.253  1.00  0.00
ATOM    418  O   GLY    75      -3.595  18.685  -3.019  1.00  0.00
ATOM    419  C   GLY    75      -2.689  17.959  -2.679  1.00  0.00
ATOM    420  N   GLU    76      -1.775  18.339  -1.797  1.00  0.00
ATOM    421  CA  GLU    76      -1.829  19.688  -1.233  1.00  0.00
ATOM    422  CB  GLU    76      -2.890  19.766  -0.132  1.00  0.00
ATOM    423  CG  GLU    76      -3.035  21.144   0.493  1.00  0.00
ATOM    424  CD  GLU    76      -4.103  21.188   1.568  1.00  0.00
ATOM    425  OE1 GLU    76      -4.667  20.120   1.887  1.00  0.00
ATOM    426  OE2 GLU    76      -4.375  22.288   2.092  1.00  0.00
ATOM    427  O   GLU    76       0.248  19.165  -0.188  1.00  0.00
ATOM    428  C   GLU    76      -0.478  20.039  -0.642  1.00  0.00
ATOM    429  N   TRP    77      -0.163  21.328  -0.666  1.00  0.00
ATOM    430  CA  TRP    77       1.063  21.816  -0.085  1.00  0.00
ATOM    431  CB  TRP    77       1.974  22.400  -1.167  1.00  0.00
ATOM    432  CG  TRP    77       2.531  21.370  -2.102  1.00  0.00
ATOM    433  CD1 TRP    77       1.979  20.948  -3.277  1.00  0.00
ATOM    434  CD2 TRP    77       3.749  20.634  -1.941  1.00  0.00
ATOM    435  CE2 TRP    77       3.871  19.782  -3.058  1.00  0.00
ATOM    436  CE3 TRP    77       4.747  20.609  -0.963  1.00  0.00
ATOM    437  NE1 TRP    77       2.777  19.993  -3.859  1.00  0.00
ATOM    438  CZ2 TRP    77       4.952  18.917  -3.222  1.00  0.00
ATOM    439  CZ3 TRP    77       5.816  19.751  -1.130  1.00  0.00
ATOM    440  CH2 TRP    77       5.913  18.915  -2.249  1.00  0.00
ATOM    441  O   TRP    77      -0.178  23.738   0.577  1.00  0.00
ATOM    442  C   TRP    77       0.641  22.885   0.909  1.00  0.00
ATOM    443  N   VAL    78       1.130  22.819   2.142  1.00  0.00
ATOM    444  CA  VAL    78       0.780  23.874   3.084  1.00  0.00
ATOM    445  CB  VAL    78       0.232  23.295   4.401  1.00  0.00
ATOM    446  CG1 VAL    78      -0.079  24.412   5.386  1.00  0.00
ATOM    447  CG2 VAL    78      -1.044  22.508   4.148  1.00  0.00
ATOM    448  O   VAL    78       3.115  23.989   3.589  1.00  0.00
ATOM    449  C   VAL    78       2.090  24.608   3.304  1.00  0.00
ATOM    450  N   LEU    79       2.086  25.917   3.139  1.00  0.00
ATOM    451  CA  LEU    79       3.318  26.680   3.347  1.00  0.00
ATOM    452  CB  LEU    79       3.888  27.153   2.008  1.00  0.00
ATOM    453  CG  LEU    79       4.303  26.058   1.023  1.00  0.00
ATOM    454  CD1 LEU    79       4.641  26.655  -0.335  1.00  0.00
ATOM    455  CD2 LEU    79       5.527  25.313   1.532  1.00  0.00
ATOM    456  O   LEU    79       1.868  28.258   4.359  1.00  0.00
ATOM    457  C   LEU    79       3.033  27.864   4.193  1.00  0.00
TER
END



