
PFRMAT TS
TARGET T0354
AUTHOR SAM_T06_server
REMARK   6 
REMARK   6 T0354 model 5 Thu Jun 29 13:30:28 2006
METHOD The SAM-T06 server uses methods similar to SAM_T04 in CASP6 and
METHOD the SAM-T02 method in CASP5.
METHOD 
METHOD We start with a fully automated method:
METHOD    
METHOD     Use the SAM-T2K and SAM-T04 methods for finding homologs of the
METHOD       target and aligning them.
METHOD 
METHOD     Make local structure predictions using neural nets and the
METHOD       multiple alignments.  Different neural nets are used for the
METHOD       SAM-T2K alignments and the SAM-T04 alignments.
METHOD       We currently use 8 local-structure alphabets: 
METHOD 	DSSP
METHOD 	STRIDE
METHOD 	STR2	an extended version of DSSP that splits the beta strands
METHOD 		into multiple classes (parallel/antiparallel/mixed,
METHOD 					edge/center)
METHOD 	ALPHA	an discretization of the alpha torsion angle:
METHOD 		CA(i-i), CA(i), CA(i+1), CA(i+2)
METHOD 	BYS	a discretization of Ramachandran plots, due to Bystroff
METHOD 	CB_burial_14_7	a 7-state discretization of the number of C_beta
METHOD 		atoms in a 14 Angstrom radius sphere around the C_beta.
METHOD 	near-backbone-11 an 11-state discretization of the number of
METHOD 	      residues (represented by near-backbone points) in a 
METHOD 	      9.65 Angstrom radius sphere around the sidechain proxy
METHOD 	      spot for the residue.
METHOD 	DSSP_EHL2	CASP's collapse of the DSSP alphabet
METHOD 			DSSP_EHL2 is not predicted directly by a
METHOD 			neural net, but is computed as a weighted
METHOD 			average of the other backbone alphabet predictions. 
METHOD     
METHOD     We make 2-track HMMs with each alphabet (1.0 amino acid + 0.3 local structure)
METHOD       and use them to score a template library of 6400 (t04) or 9900 (t2k) templates
METHOD       We also used a single-track HMM to score not just the template
METHOD       library, but a non-redundant copy of the entire PDB.
METHOD 
METHOD     We also made a few 3-track HMMs (AA, str2, CB_burial_14_7 and 
METHOD       AA, str2, near-backbone-11) for finding and aligning more remote
METHOD       homologs.
METHOD     
METHOD     One-track HMMs built from the template library multiple alignments
METHOD        were used to score the target sequence (for early targets, only
METHOD        t2k template library was searched this way).
METHOD 
METHOD     All the logs of e-values were combined in a weighted average (with
METHOD        rather arbitrary weights, since we did not have time to
METHOD        optimize them), and the best templates ranked.  Ranking was
METHOD        separate for predictions from the t2k and t04 multiple alignments.
METHOD     
METHOD     Alignments of the target to the top templates were made using
METHOD       several different alignment methods (mainly using the SAM hmmscore
METHOD       program, but a few alignments were made with Bob Edgar's MUSCLE
METHOD       profile-profile aligner).
METHOD 
METHOD     Generate fragments (short 9-residue alignments for each position)
METHOD       using SAM's "fragfinder" program and the 3-track HMM.
METHOD 
METHOD     Then the "undertaker" program (named because it optimizes burial)
METHOD       is used to try to combine the alignments and the fragments into
METHOD       a consistent 3D model.  No single alignment or parent template
METHOD       was used, though in many cases one had much more influence than
METHOD       the others.  The alignment scores were not passed to undertaker,
METHOD       but were used only to pick the set of alignments and fragments
METHOD       that undertaker would see.  Helix and strand constraints
METHOD       generated from the secondary-structure predictions are passed to
METHOD       undertaker to use in the cost function.
METHOD 
METHOD     One important change in this server over previous methods is that
METHOD     sheet constraints are extracted from the top few alignments and
METHOD     passed to undertaker. 
METHOD -------------
MODEL  5
PARENT N/A
ATOM      1  N   MET     1       7.655  11.933  12.384  1.00  0.00
ATOM      2  CA  MET     1       8.775  12.355  11.555  1.00  0.00
ATOM      3  CB  MET     1       9.504  13.537  12.198  1.00  0.00
ATOM      4  CG  MET     1       8.698  14.825  12.220  1.00  0.00
ATOM      5  SD  MET     1       8.256  15.397  10.567  1.00  0.00
ATOM      6  CE  MET     1       9.862  15.862   9.928  1.00  0.00
ATOM      7  O   MET     1      10.533  11.388  10.262  1.00  0.00
ATOM      8  C   MET     1       9.860  11.316  11.288  1.00  0.00
ATOM      9  N   GLU     2      10.047  10.358  12.192  1.00  0.00
ATOM     10  CA  GLU     2      11.079   9.347  11.977  1.00  0.00
ATOM     11  CB  GLU     2      11.495   8.715  13.307  1.00  0.00
ATOM     12  CG  GLU     2      12.611   7.690  13.185  1.00  0.00
ATOM     13  CD  GLU     2      12.999   7.090  14.522  1.00  0.00
ATOM     14  OE1 GLU     2      12.363   7.440  15.538  1.00  0.00
ATOM     15  OE2 GLU     2      13.938   6.267  14.553  1.00  0.00
ATOM     16  O   GLU     2       9.506   7.669  11.284  1.00  0.00
ATOM     17  C   GLU     2      10.579   8.236  11.062  1.00  0.00
ATOM     18  N   ILE     3      11.365   7.927  10.036  1.00  0.00
ATOM     19  CA  ILE     3      11.005   6.903   9.063  1.00  0.00
ATOM     20  CB  ILE     3      12.109   6.714   8.007  1.00  0.00
ATOM     21  CG1 ILE     3      12.213   7.953   7.116  1.00  0.00
ATOM     22  CG2 ILE     3      11.805   5.512   7.128  1.00  0.00
ATOM     23  CD1 ILE     3      13.435   7.964   6.224  1.00  0.00
ATOM     24  O   ILE     3       9.961   4.751   9.112  1.00  0.00
ATOM     25  C   ILE     3      10.759   5.517   9.649  1.00  0.00
ATOM     26  N   GLN     4      11.445   5.186  10.738  1.00  0.00
ATOM     27  CA  GLN     4      11.265   3.881  11.366  1.00  0.00
ATOM     28  CB  GLN     4      12.233   3.713  12.539  1.00  0.00
ATOM     29  CG  GLN     4      13.687   3.556  12.128  1.00  0.00
ATOM     30  CD  GLN     4      14.628   3.526  13.317  1.00  0.00
ATOM     31  OE1 GLN     4      14.207   3.702  14.460  1.00  0.00
ATOM     32  NE2 GLN     4      15.910   3.301  13.048  1.00  0.00
ATOM     33  O   GLN     4       9.183   2.717  11.657  1.00  0.00
ATOM     34  C   GLN     4       9.839   3.733  11.889  1.00  0.00
ATOM     35  N   GLU     5       9.366   4.759  12.590  1.00  0.00
ATOM     36  CA  GLU     5       8.022   4.768  13.161  1.00  0.00
ATOM     37  CB  GLU     5       7.823   6.003  14.043  1.00  0.00
ATOM     38  CG  GLU     5       8.620   5.976  15.337  1.00  0.00
ATOM     39  CD  GLU     5       8.494   7.264  16.125  1.00  0.00
ATOM     40  OE1 GLU     5       7.842   8.206  15.626  1.00  0.00
ATOM     41  OE2 GLU     5       9.048   7.334  17.242  1.00  0.00
ATOM     42  O   GLU     5       5.933   4.122  12.153  1.00  0.00
ATOM     43  C   GLU     5       6.964   4.793  12.060  1.00  0.00
ATOM     44  N   ILE     6       7.222   5.575  11.017  1.00  0.00
ATOM     45  CA  ILE     6       6.296   5.670   9.897  1.00  0.00
ATOM     46  CB  ILE     6       6.775   6.698   8.856  1.00  0.00
ATOM     47  CG1 ILE     6       6.710   8.113   9.434  1.00  0.00
ATOM     48  CG2 ILE     6       5.898   6.645   7.613  1.00  0.00
ATOM     49  CD1 ILE     6       7.405   9.154   8.583  1.00  0.00
ATOM     50  O   ILE     6       5.118   3.859   8.851  1.00  0.00
ATOM     51  C   ILE     6       6.199   4.301   9.235  1.00  0.00
ATOM     52  N   SER     7       7.339   3.627   9.116  1.00  0.00
ATOM     53  CA  SER     7       7.380   2.304   8.516  1.00  0.00
ATOM     54  CB  SER     7       8.818   1.785   8.463  1.00  0.00
ATOM     55  OG  SER     7       9.612   2.567   7.586  1.00  0.00
ATOM     56  O   SER     7       5.848   0.479   8.801  1.00  0.00
ATOM     57  C   SER     7       6.535   1.342   9.346  1.00  0.00
ATOM     58  N   LYS     8       6.590   1.497  10.666  1.00  0.00
ATOM     59  CA  LYS     8       5.820   0.650  11.575  1.00  0.00
ATOM     60  CB  LYS     8       6.051   1.072  13.027  1.00  0.00
ATOM     61  CG  LYS     8       5.317   0.216  14.047  1.00  0.00
ATOM     62  CD  LYS     8       5.648   0.646  15.467  1.00  0.00
ATOM     63  CE  LYS     8       4.878  -0.178  16.487  1.00  0.00
ATOM     64  NZ  LYS     8       5.173   0.248  17.882  1.00  0.00
ATOM     65  O   LYS     8       3.626  -0.217  11.113  1.00  0.00
ATOM     66  C   LYS     8       4.340   0.779  11.253  1.00  0.00
ATOM     67  N   LEU     9       3.889   2.022  11.138  1.00  0.00
ATOM     68  CA  LEU     9       2.493   2.308  10.851  1.00  0.00
ATOM     69  CB  LEU     9       2.246   3.818  10.846  1.00  0.00
ATOM     70  CG  LEU     9       2.336   4.524  12.200  1.00  0.00
ATOM     71  CD1 LEU     9       2.251   6.033  12.026  1.00  0.00
ATOM     72  CD2 LEU     9       1.199   4.086  13.112  1.00  0.00
ATOM     73  O   LEU     9       0.985   1.225   9.334  1.00  0.00
ATOM     74  C   LEU     9       2.084   1.761   9.492  1.00  0.00
ATOM     75  N   ALA    10       2.970   1.881   8.511  1.00  0.00
ATOM     76  CA  ALA    10       2.678   1.363   7.180  1.00  0.00
ATOM     77  CB  ALA    10       3.852   1.608   6.244  1.00  0.00
ATOM     78  O   ALA    10       1.472  -0.650   6.650  1.00  0.00
ATOM     79  C   ALA    10       2.414  -0.143   7.256  1.00  0.00
ATOM     80  N   ILE    11       3.251  -0.848   8.011  1.00  0.00
ATOM     81  CA  ILE    11       3.106  -2.293   8.155  1.00  0.00
ATOM     82  CB  ILE    11       4.255  -2.894   8.986  1.00  0.00
ATOM     83  CG1 ILE    11       5.577  -2.788   8.221  1.00  0.00
ATOM     84  CG2 ILE    11       3.987  -4.361   9.282  1.00  0.00
ATOM     85  CD1 ILE    11       6.795  -3.108   9.060  1.00  0.00
ATOM     86  O   ILE    11       1.111  -3.587   8.432  1.00  0.00
ATOM     87  C   ILE    11       1.802  -2.666   8.854  1.00  0.00
ATOM     88  N   GLU    12       1.467  -1.947   9.920  1.00  0.00
ATOM     89  CA  GLU    12       0.232  -2.223  10.647  1.00  0.00
ATOM     90  CB  GLU    12       0.069  -1.249  11.815  1.00  0.00
ATOM     91  CG  GLU    12      -1.171  -1.493  12.657  1.00  0.00
ATOM     92  CD  GLU    12      -1.281  -0.530  13.825  1.00  0.00
ATOM     93  OE1 GLU    12      -0.379   0.318  13.981  1.00  0.00
ATOM     94  OE2 GLU    12      -2.270  -0.626  14.582  1.00  0.00
ATOM     95  O   GLU    12      -1.871  -2.913   9.708  1.00  0.00
ATOM     96  C   GLU    12      -0.969  -2.074   9.722  1.00  0.00
ATOM     97  N   ALA    13      -0.977  -1.003   8.939  1.00  0.00
ATOM     98  CA  ALA    13      -2.088  -0.754   8.038  1.00  0.00
ATOM     99  CB  ALA    13      -1.883   0.556   7.292  1.00  0.00
ATOM    100  O   ALA    13      -3.362  -2.389   6.832  1.00  0.00
ATOM    101  C   ALA    13      -2.270  -1.841   6.981  1.00  0.00
ATOM    102  N   LEU    14      -1.202  -2.163   6.260  1.00  0.00
ATOM    103  CA  LEU    14      -1.277  -3.179   5.218  1.00  0.00
ATOM    104  CB  LEU    14       0.002  -3.181   4.377  1.00  0.00
ATOM    105  CG  LEU    14       0.220  -1.966   3.475  1.00  0.00
ATOM    106  CD1 LEU    14       1.607  -2.007   2.846  1.00  0.00
ATOM    107  CD2 LEU    14      -0.808  -1.936   2.355  1.00  0.00
ATOM    108  O   LEU    14      -2.295  -5.352   5.319  1.00  0.00
ATOM    109  C   LEU    14      -1.454  -4.587   5.797  1.00  0.00
ATOM    110  N   GLU    15      -0.673  -4.923   6.821  1.00  0.00
ATOM    111  CA  GLU    15      -0.748  -6.242   7.453  1.00  0.00
ATOM    112  CB  GLU    15       0.447  -6.459   8.383  1.00  0.00
ATOM    113  CG  GLU    15       0.486  -7.832   9.034  1.00  0.00
ATOM    114  CD  GLU    15       1.700  -8.023   9.921  1.00  0.00
ATOM    115  OE1 GLU    15       2.512  -7.079  10.027  1.00  0.00
ATOM    116  OE2 GLU    15       1.840  -9.114  10.511  1.00  0.00
ATOM    117  O   GLU    15      -2.647  -7.511   8.193  1.00  0.00
ATOM    118  C   GLU    15      -1.997  -6.466   8.299  1.00  0.00
ATOM    119  N   ASP    16      -2.341  -5.496   9.137  1.00  0.00
ATOM    120  CA  ASP    16      -3.474  -5.654  10.039  1.00  0.00
ATOM    121  CB  ASP    16      -3.108  -5.185  11.448  1.00  0.00
ATOM    122  CG  ASP    16      -1.965  -5.980  12.050  1.00  0.00
ATOM    123  OD1 ASP    16      -2.022  -7.227  12.003  1.00  0.00
ATOM    124  OD2 ASP    16      -1.014  -5.357  12.565  1.00  0.00
ATOM    125  O   ASP    16      -5.742  -5.029  10.467  1.00  0.00
ATOM    126  C   ASP    16      -4.765  -4.911   9.725  1.00  0.00
ATOM    127  N   ILE    17      -4.775  -4.164   8.627  1.00  0.00
ATOM    128  CA  ILE    17      -5.974  -3.439   8.243  1.00  0.00
ATOM    129  CB  ILE    17      -7.165  -4.390   8.032  1.00  0.00
ATOM    130  CG1 ILE    17      -6.819  -5.455   6.988  1.00  0.00
ATOM    131  CG2 ILE    17      -8.384  -3.620   7.549  1.00  0.00
ATOM    132  CD1 ILE    17      -7.891  -6.507   6.810  1.00  0.00
ATOM    133  O   ILE    17      -7.618  -2.249   9.511  1.00  0.00
ATOM    134  C   ILE    17      -6.423  -2.421   9.273  1.00  0.00
ATOM    135  N   LYS    18      -3.829   2.233  15.631  1.00  0.00
ATOM    136  CA  LYS    18      -4.455   2.757  16.841  1.00  0.00
ATOM    137  CB  LYS    18      -3.646   2.359  18.078  1.00  0.00
ATOM    138  CG  LYS    18      -3.645   0.866  18.364  1.00  0.00
ATOM    139  CD  LYS    18      -2.849   0.545  19.619  1.00  0.00
ATOM    140  CE  LYS    18      -2.783  -0.953  19.863  1.00  0.00
ATOM    141  NZ  LYS    18      -2.020  -1.282  21.099  1.00  0.00
ATOM    142  O   LYS    18      -3.587   4.932  16.344  1.00  0.00
ATOM    143  C   LYS    18      -4.531   4.276  16.780  1.00  0.00
ATOM    144  N   GLY    19      -5.661   4.821  17.214  1.00  0.00
ATOM    145  CA  GLY    19      -5.861   6.264  17.227  1.00  0.00
ATOM    146  O   GLY    19      -4.397   6.133  19.122  1.00  0.00
ATOM    147  C   GLY    19      -5.015   6.863  18.347  1.00  0.00
ATOM    148  N   LYS    20      -4.999   8.188  18.439  1.00  0.00
ATOM    149  CA  LYS    20      -4.209   8.864  19.460  1.00  0.00
ATOM    150  CB  LYS    20      -4.389  10.381  19.361  1.00  0.00
ATOM    151  CG  LYS    20      -3.778  10.996  18.113  1.00  0.00
ATOM    152  CD  LYS    20      -4.019  12.497  18.062  1.00  0.00
ATOM    153  CE  LYS    20      -3.374  13.119  16.835  1.00  0.00
ATOM    154  NZ  LYS    20      -3.626  14.585  16.758  1.00  0.00
ATOM    155  O   LYS    20      -3.782   8.624  21.806  1.00  0.00
ATOM    156  C   LYS    20      -4.586   8.468  20.885  1.00  0.00
ATOM    157  N   ASP    21      -5.798   7.956  21.071  1.00  0.00
ATOM    158  CA  ASP    21      -6.242   7.552  22.401  1.00  0.00
ATOM    159  CB  ASP    21      -7.718   7.900  22.601  1.00  0.00
ATOM    160  CG  ASP    21      -8.626   7.175  21.628  1.00  0.00
ATOM    161  OD1 ASP    21      -8.102   6.434  20.767  1.00  0.00
ATOM    162  OD2 ASP    21      -9.859   7.343  21.725  1.00  0.00
ATOM    163  O   ASP    21      -6.529   5.493  23.604  1.00  0.00
ATOM    164  C   ASP    21      -6.078   6.047  22.602  1.00  0.00
ATOM    165  N   ILE    22      -5.429   5.394  21.642  1.00  0.00
ATOM    166  CA  ILE    22      -5.196   3.962  21.739  1.00  0.00
ATOM    167  CB  ILE    22      -5.088   3.506  23.206  1.00  0.00
ATOM    168  CG1 ILE    22      -6.408   3.751  23.941  1.00  0.00
ATOM    169  CG2 ILE    22      -3.987   4.274  23.922  1.00  0.00
ATOM    170  CD1 ILE    22      -6.457   3.144  25.326  1.00  0.00
ATOM    171  O   ILE    22      -6.040   1.863  20.967  1.00  0.00
ATOM    172  C   ILE    22      -6.261   3.064  21.133  1.00  0.00
ATOM    173  N   ILE    23      -7.417   3.629  20.802  1.00  0.00
ATOM    174  CA  ILE    23      -8.492   2.833  20.221  1.00  0.00
ATOM    175  CB  ILE    23      -9.798   3.640  20.115  1.00  0.00
ATOM    176  CG1 ILE    23     -10.315   4.006  21.508  1.00  0.00
ATOM    177  CG2 ILE    23     -10.870   2.829  19.403  1.00  0.00
ATOM    178  CD1 ILE    23     -11.446   5.011  21.497  1.00  0.00
ATOM    179  O   ILE    23      -7.630   3.133  18.014  1.00  0.00
ATOM    180  C   ILE    23      -8.132   2.361  18.828  1.00  0.00
ATOM    181  N   GLU    24      -8.411   1.094  18.546  1.00  0.00
ATOM    182  CA  GLU    24      -8.115   0.546  17.232  1.00  0.00
ATOM    183  CB  GLU    24      -8.300  -0.974  17.232  1.00  0.00
ATOM    184  CG  GLU    24      -7.926  -1.644  15.920  1.00  0.00
ATOM    185  CD  GLU    24      -8.069  -3.153  15.976  1.00  0.00
ATOM    186  OE1 GLU    24      -8.473  -3.672  17.037  1.00  0.00
ATOM    187  OE2 GLU    24      -7.777  -3.815  14.958  1.00  0.00
ATOM    188  O   GLU    24     -10.248   1.270  16.388  1.00  0.00
ATOM    189  C   GLU    24      -9.040   1.139  16.175  1.00  0.00
ATOM    190  N   LEU    25      -8.462   1.500  15.037  1.00  0.00
ATOM    191  CA  LEU    25      -9.217   2.070  13.931  1.00  0.00
ATOM    192  CB  LEU    25      -8.666   3.448  13.560  1.00  0.00
ATOM    193  CG  LEU    25      -9.327   4.145  12.367  1.00  0.00
ATOM    194  CD1 LEU    25     -10.785   4.454  12.665  1.00  0.00
ATOM    195  CD2 LEU    25      -8.618   5.452  12.049  1.00  0.00
ATOM    196  O   LEU    25      -8.003   0.884  12.244  1.00  0.00
ATOM    197  C   LEU    25      -9.103   1.141  12.723  1.00  0.00
ATOM    198  N   ASP    26     -10.234   0.632  12.241  1.00  0.00
ATOM    199  CA  ASP    26     -10.215  -0.247  11.076  1.00  0.00
ATOM    200  CB  ASP    26     -11.533  -1.017  10.965  1.00  0.00
ATOM    201  CG  ASP    26     -11.526  -2.024   9.831  1.00  0.00
ATOM    202  OD1 ASP    26     -10.525  -2.072   9.086  1.00  0.00
ATOM    203  OD2 ASP    26     -12.522  -2.762   9.687  1.00  0.00
ATOM    204  O   ASP    26     -10.698   1.601   9.630  1.00  0.00
ATOM    205  C   ASP    26     -10.020   0.588   9.823  1.00  0.00
ATOM    206  N   THR    27      -9.100   0.155   8.971  1.00  0.00
ATOM    207  CA  THR    27      -8.807   0.878   7.744  1.00  0.00
ATOM    208  CB  THR    27      -7.462   1.623   7.833  1.00  0.00
ATOM    209  CG2 THR    27      -7.186   2.380   6.544  1.00  0.00
ATOM    210  OG1 THR    27      -7.503   2.557   8.920  1.00  0.00
ATOM    211  O   THR    27      -8.095  -1.078   6.560  1.00  0.00
ATOM    212  C   THR    27      -8.714  -0.015   6.519  1.00  0.00
ATOM    213  N   PHE    34      -9.341   0.423   5.431  1.00  0.00
ATOM    214  CA  PHE    34      -9.248  -0.291   4.165  1.00  0.00
ATOM    215  CB  PHE    34     -10.521  -0.086   3.340  1.00  0.00
ATOM    216  CG  PHE    34     -11.733  -0.762   3.915  1.00  0.00
ATOM    217  CD1 PHE    34     -12.622  -0.061   4.710  1.00  0.00
ATOM    218  CD2 PHE    34     -11.983  -2.099   3.661  1.00  0.00
ATOM    219  CE1 PHE    34     -13.738  -0.683   5.239  1.00  0.00
ATOM    220  CE2 PHE    34     -13.097  -2.722   4.190  1.00  0.00
ATOM    221  CZ  PHE    34     -13.972  -2.018   4.976  1.00  0.00
ATOM    222  O   PHE    34      -7.919   1.594   3.509  1.00  0.00
ATOM    223  C   PHE    34      -8.019   0.368   3.545  1.00  0.00
ATOM    224  N   GLN    35      -7.073  -0.434   3.081  1.00  0.00
ATOM    225  CA  GLN    35      -5.845   0.118   2.527  1.00  0.00
ATOM    226  CB  GLN    35      -4.625  -0.455   3.253  1.00  0.00
ATOM    227  CG  GLN    35      -3.295   0.082   2.751  1.00  0.00
ATOM    228  CD  GLN    35      -3.149   1.575   2.966  1.00  0.00
ATOM    229  OE1 GLN    35      -3.333   2.072   4.077  1.00  0.00
ATOM    230  NE2 GLN    35      -2.818   2.296   1.901  1.00  0.00
ATOM    231  O   GLN    35      -5.236  -1.273   0.671  1.00  0.00
ATOM    232  C   GLN    35      -5.639  -0.172   1.047  1.00  0.00
ATOM    233  N   ARG    36      -5.917   0.827   0.214  1.00  0.00
ATOM    234  CA  ARG    36      -5.740   0.691  -1.226  1.00  0.00
ATOM    235  CB  ARG    36      -6.991   1.170  -1.967  1.00  0.00
ATOM    236  CG  ARG    36      -8.234   0.341  -1.686  1.00  0.00
ATOM    237  CD  ARG    36      -9.442   0.889  -2.427  1.00  0.00
ATOM    238  NE  ARG    36     -10.660   0.144  -2.114  1.00  0.00
ATOM    239  CZ  ARG    36     -11.823   0.321  -2.731  1.00  0.00
ATOM    240  NH1 ARG    36     -12.877  -0.402  -2.379  1.00  0.00
ATOM    241  NH2 ARG    36     -11.930   1.224  -3.698  1.00  0.00
ATOM    242  O   ARG    36      -3.788   1.112  -2.546  1.00  0.00
ATOM    243  C   ARG    36      -4.556   1.525  -1.679  1.00  0.00
ATOM    244  N   MET    37      -4.411   2.706  -1.087  1.00  0.00
ATOM    245  CA  MET    37      -3.314   3.587  -1.451  1.00  0.00
ATOM    246  CB  MET    37      -3.771   4.610  -2.492  1.00  0.00
ATOM    247  CG  MET    37      -2.691   5.597  -2.908  1.00  0.00
ATOM    248  SD  MET    37      -3.222   6.686  -4.243  1.00  0.00
ATOM    249  CE  MET    37      -4.378   7.745  -3.379  1.00  0.00
ATOM    250  O   MET    37      -3.558   4.722   0.654  1.00  0.00
ATOM    251  C   MET    37      -2.793   4.347  -0.241  1.00  0.00
ATOM    252  N   ILE    38      -1.483   4.555  -0.219  1.00  0.00
ATOM    253  CA  ILE    38      -0.824   5.265   0.866  1.00  0.00
ATOM    254  CB  ILE    38       0.308   4.423   1.486  1.00  0.00
ATOM    255  CG1 ILE    38      -0.252   3.124   2.068  1.00  0.00
ATOM    256  CG2 ILE    38       0.994   5.195   2.603  1.00  0.00
ATOM    257  CD1 ILE    38       0.812   2.137   2.493  1.00  0.00
ATOM    258  O   ILE    38       0.498   6.534  -0.666  1.00  0.00
ATOM    259  C   ILE    38      -0.232   6.555   0.323  1.00  0.00
ATOM    260  N   VAL    39      -0.546   7.676   0.968  1.00  0.00
ATOM    261  CA  VAL    39      -0.019   8.963   0.531  1.00  0.00
ATOM    262  CB  VAL    39      -0.886  10.130   1.038  1.00  0.00
ATOM    263  CG1 VAL    39      -0.278  11.463   0.630  1.00  0.00
ATOM    264  CG2 VAL    39      -2.289  10.045   0.456  1.00  0.00
ATOM    265  O   VAL    39       1.618   9.096   2.276  1.00  0.00
ATOM    266  C   VAL    39       1.392   9.151   1.066  1.00  0.00
ATOM    267  N   ALA    40       2.342   9.355   0.161  1.00  0.00
ATOM    268  CA  ALA    40       3.728   9.570   0.549  1.00  0.00
ATOM    269  CB  ALA    40       4.624   8.507  -0.069  1.00  0.00
ATOM    270  O   ALA    40       3.482  11.570  -0.748  1.00  0.00
ATOM    271  C   ALA    40       4.172  10.944   0.064  1.00  0.00
ATOM    272  N   THR    41       5.319  11.410   0.547  1.00  0.00
ATOM    273  CA  THR    41       5.794  12.745   0.194  1.00  0.00
ATOM    274  CB  THR    41       5.804  13.682   1.417  1.00  0.00
ATOM    275  CG2 THR    41       4.415  13.773   2.030  1.00  0.00
ATOM    276  OG1 THR    41       6.715  13.178   2.402  1.00  0.00
ATOM    277  O   THR    41       8.011  11.913  -0.235  1.00  0.00
ATOM    278  C   THR    41       7.209  12.832  -0.375  1.00  0.00
ATOM    279  N   GLY    42       7.499  13.966  -1.008  1.00  0.00
ATOM    280  CA  GLY    42       8.813  14.186  -1.587  1.00  0.00
ATOM    281  O   GLY    42       9.792  16.166  -2.504  1.00  0.00
ATOM    282  C   GLY    42       9.167  15.661  -1.575  1.00  0.00
ATOM    283  N   ASP    43       8.770  16.341  -0.505  1.00  0.00
ATOM    284  CA  ASP    43       9.001  17.774  -0.338  1.00  0.00
ATOM    285  CB  ASP    43       8.272  18.294   0.903  1.00  0.00
ATOM    286  CG  ASP    43       6.771  18.378   0.705  1.00  0.00
ATOM    287  OD1 ASP    43       6.317  18.271  -0.454  1.00  0.00
ATOM    288  OD2 ASP    43       6.049  18.549   1.709  1.00  0.00
ATOM    289  O   ASP    43      10.895  19.242  -0.538  1.00  0.00
ATOM    290  C   ASP    43      10.474  18.145  -0.170  1.00  0.00
ATOM    291  N   SER    44      11.252  17.225   0.392  1.00  0.00
ATOM    292  CA  SER    44      12.676  17.440   0.631  1.00  0.00
ATOM    293  CB  SER    44      12.892  18.175   1.955  1.00  0.00
ATOM    294  OG  SER    44      12.513  17.367   3.055  1.00  0.00
ATOM    295  O   SER    44      12.739  15.047   0.744  1.00  0.00
ATOM    296  C   SER    44      13.395  16.093   0.690  1.00  0.00
ATOM    297  N   ASN    45      14.747  16.101   0.666  1.00  0.00
ATOM    298  CA  ASN    45      15.528  14.857   0.714  1.00  0.00
ATOM    299  CB  ASN    45      17.004  15.161   0.977  1.00  0.00
ATOM    300  CG  ASN    45      17.699  15.760  -0.229  1.00  0.00
ATOM    301  ND2 ASN    45      18.868  16.348  -0.005  1.00  0.00
ATOM    302  OD1 ASN    45      17.190  15.693  -1.347  1.00  0.00
ATOM    303  O   ASN    45      14.995  12.695   1.603  1.00  0.00
ATOM    304  C   ASN    45      15.066  13.902   1.809  1.00  0.00
ATOM    305  N   ARG    46      14.740  14.471   2.963  1.00  0.00
ATOM    306  CA  ARG    46      14.277  13.711   4.125  1.00  0.00
ATOM    307  CB  ARG    46      14.023  14.646   5.310  1.00  0.00
ATOM    308  CG  ARG    46      15.286  15.228   5.923  1.00  0.00
ATOM    309  CD  ARG    46      14.959  16.180   7.062  1.00  0.00
ATOM    310  NE  ARG    46      16.162  16.786   7.631  1.00  0.00
ATOM    311  CZ  ARG    46      16.152  17.696   8.600  1.00  0.00
ATOM    312  NH1 ARG    46      17.295  18.191   9.054  1.00  0.00
ATOM    313  NH2 ARG    46      15.000  18.108   9.111  1.00  0.00
ATOM    314  O   ARG    46      12.831  11.789   4.163  1.00  0.00
ATOM    315  C   ARG    46      12.976  12.966   3.828  1.00  0.00
ATOM    316  N   GLN    47      12.030  13.656   3.198  1.00  0.00
ATOM    317  CA  GLN    47      10.755  13.047   2.855  1.00  0.00
ATOM    318  CB  GLN    47       9.796  14.094   2.286  1.00  0.00
ATOM    319  CG  GLN    47       9.352  15.143   3.294  1.00  0.00
ATOM    320  CD  GLN    47       8.610  14.541   4.470  1.00  0.00
ATOM    321  OE1 GLN    47       7.733  13.694   4.297  1.00  0.00
ATOM    322  NE2 GLN    47       8.961  14.976   5.674  1.00  0.00
ATOM    323  O   GLN    47      10.341  10.895   1.865  1.00  0.00
ATOM    324  C   GLN    47      10.965  11.954   1.810  1.00  0.00
ATOM    325  N   VAL    48      11.840  12.220   0.846  1.00  0.00
ATOM    326  CA  VAL    48      12.132  11.251  -0.205  1.00  0.00
ATOM    327  CB  VAL    48      13.104  11.825  -1.250  1.00  0.00
ATOM    328  CG1 VAL    48      13.549  10.739  -2.218  1.00  0.00
ATOM    329  CG2 VAL    48      12.439  12.936  -2.046  1.00  0.00
ATOM    330  O   VAL    48      12.521   8.890   0.022  1.00  0.00
ATOM    331  C   VAL    48      12.761  10.020   0.439  1.00  0.00
ATOM    332  N   LYS    49      13.564  10.269   1.467  1.00  0.00
ATOM    333  CA  LYS    49      14.245   9.215   2.216  1.00  0.00
ATOM    334  CB  LYS    49      15.128   9.820   3.310  1.00  0.00
ATOM    335  CG  LYS    49      15.908   8.793   4.115  1.00  0.00
ATOM    336  CD  LYS    49      16.815   9.466   5.134  1.00  0.00
ATOM    337  CE  LYS    49      17.559   8.438   5.971  1.00  0.00
ATOM    338  NZ  LYS    49      18.433   9.083   6.991  1.00  0.00
ATOM    339  O   LYS    49      13.289   7.070   2.768  1.00  0.00
ATOM    340  C   LYS    49      13.208   8.296   2.867  1.00  0.00
ATOM    341  N   ALA    50      12.233   8.907   3.533  1.00  0.00
ATOM    342  CA  ALA    50      11.158   8.175   4.197  1.00  0.00
ATOM    343  CB  ALA    50      10.223   9.140   4.912  1.00  0.00
ATOM    344  O   ALA    50      10.010   6.216   3.401  1.00  0.00
ATOM    345  C   ALA    50      10.349   7.379   3.176  1.00  0.00
ATOM    346  N   ALA    52      10.046   8.008   2.045  1.00  0.00
ATOM    347  CA  ALA    52       9.281   7.350   0.996  1.00  0.00
ATOM    348  CB  ALA    52       9.037   8.306  -0.162  1.00  0.00
ATOM    349  O   ALA    52       9.416   5.088   0.198  1.00  0.00
ATOM    350  C   ALA    52      10.022   6.131   0.456  1.00  0.00
ATOM    351  N   ASN    53      11.332   6.266   0.285  1.00  0.00
ATOM    352  CA  ASN    53      12.150   5.172  -0.209  1.00  0.00
ATOM    353  CB  ASN    53      13.601   5.625  -0.387  1.00  0.00
ATOM    354  CG  ASN    53      13.783   6.541  -1.581  1.00  0.00
ATOM    355  ND2 ASN    53      14.874   7.297  -1.584  1.00  0.00
ATOM    356  OD1 ASN    53      12.950   6.569  -2.488  1.00  0.00
ATOM    357  O   ASN    53      11.996   2.851   0.407  1.00  0.00
ATOM    358  C   ASN    53      12.109   4.017   0.789  1.00  0.00
ATOM    359  N   SER    54      12.193   4.359   2.070  1.00  0.00
ATOM    360  CA  SER    54      12.181   3.361   3.136  1.00  0.00
ATOM    361  CB  SER    54      12.420   4.026   4.493  1.00  0.00
ATOM    362  OG  SER    54      13.725   4.571   4.572  1.00  0.00
ATOM    363  O   SER    54      10.788   1.427   3.395  1.00  0.00
ATOM    364  C   SER    54      10.841   2.639   3.190  1.00  0.00
ATOM    365  N   VAL    55       9.758   3.389   3.009  1.00  0.00
ATOM    366  CA  VAL    55       8.421   2.808   3.016  1.00  0.00
ATOM    367  CB  VAL    55       7.340   3.875   2.760  1.00  0.00
ATOM    368  CG1 VAL    55       5.980   3.221   2.573  1.00  0.00
ATOM    369  CG2 VAL    55       7.253   4.837   3.935  1.00  0.00
ATOM    370  O   VAL    55       7.817   0.660   2.129  1.00  0.00
ATOM    371  C   VAL    55       8.340   1.753   1.918  1.00  0.00
ATOM    372  N   GLN    56       8.860   2.090   0.742  1.00  0.00
ATOM    373  CA  GLN    56       8.861   1.160  -0.377  1.00  0.00
ATOM    374  CB  GLN    56       9.457   1.819  -1.622  1.00  0.00
ATOM    375  CG  GLN    56       8.577   2.896  -2.237  1.00  0.00
ATOM    376  CD  GLN    56       9.255   3.618  -3.385  1.00  0.00
ATOM    377  OE1 GLN    56      10.425   3.372  -3.681  1.00  0.00
ATOM    378  NE2 GLN    56       8.521   4.512  -4.035  1.00  0.00
ATOM    379  O   GLN    56       9.305  -1.191  -0.167  1.00  0.00
ATOM    380  C   GLN    56       9.703  -0.045   0.029  1.00  0.00
ATOM    381  N   VAL    57      10.867   0.241   0.602  1.00  0.00
ATOM    382  CA  VAL    57      11.802  -0.785   1.054  1.00  0.00
ATOM    383  CB  VAL    57      12.963  -0.175   1.862  1.00  0.00
ATOM    384  CG1 VAL    57      13.807  -1.272   2.492  1.00  0.00
ATOM    385  CG2 VAL    57      13.856   0.661   0.959  1.00  0.00
ATOM    386  O   VAL    57      11.112  -3.007   1.658  1.00  0.00
ATOM    387  C   VAL    57      11.112  -1.813   1.951  1.00  0.00
ATOM    388  N   LYS    58      10.527  -1.335   3.043  1.00  0.00
ATOM    389  CA  LYS    58       9.849  -2.205   3.997  1.00  0.00
ATOM    390  CB  LYS    58       9.280  -1.387   5.158  1.00  0.00
ATOM    391  CG  LYS    58       8.606  -2.221   6.235  1.00  0.00
ATOM    392  CD  LYS    58       9.617  -3.071   6.988  1.00  0.00
ATOM    393  CE  LYS    58       8.965  -3.802   8.151  1.00  0.00
ATOM    394  NZ  LYS    58       9.947  -4.631   8.904  1.00  0.00
ATOM    395  O   LYS    58       8.501  -4.168   3.690  1.00  0.00
ATOM    396  C   LYS    58       8.681  -2.984   3.392  1.00  0.00
ATOM    397  N   LEU    59       7.883  -2.327   2.553  1.00  0.00
ATOM    398  CA  LEU    59       6.752  -2.991   1.915  1.00  0.00
ATOM    399  CB  LEU    59       5.986  -2.008   1.027  1.00  0.00
ATOM    400  CG  LEU    59       5.209  -0.906   1.749  1.00  0.00
ATOM    401  CD1 LEU    59       4.649   0.099   0.753  1.00  0.00
ATOM    402  CD2 LEU    59       4.047  -1.493   2.535  1.00  0.00
ATOM    403  O   LEU    59       6.602  -5.207   1.000  1.00  0.00
ATOM    404  C   LEU    59       7.234  -4.150   1.048  1.00  0.00
ATOM    405  N   LYS    60       8.349  -3.941   0.356  1.00  0.00
ATOM    406  CA  LYS    60       8.923  -4.969  -0.506  1.00  0.00
ATOM    407  CB  LYS    60      10.143  -4.424  -1.252  1.00  0.00
ATOM    408  CG  LYS    60       9.808  -3.400  -2.324  1.00  0.00
ATOM    409  CD  LYS    60      11.063  -2.905  -3.025  1.00  0.00
ATOM    410  CE  LYS    60      10.730  -1.863  -4.080  1.00  0.00
ATOM    411  NZ  LYS    60      11.954  -1.343  -4.752  1.00  0.00
ATOM    412  O   LYS    60       9.117  -7.315  -0.039  1.00  0.00
ATOM    413  C   LYS    60       9.356  -6.165   0.331  1.00  0.00
ATOM    414  N   GLU    61       9.990  -5.887   1.464  1.00  0.00
ATOM    415  CA  GLU    61      10.464  -6.943   2.351  1.00  0.00
ATOM    416  CB  GLU    61      11.277  -6.350   3.503  1.00  0.00
ATOM    417  CG  GLU    61      12.623  -5.783   3.086  1.00  0.00
ATOM    418  CD  GLU    61      13.360  -5.124   4.236  1.00  0.00
ATOM    419  OE1 GLU    61      12.789  -5.056   5.345  1.00  0.00
ATOM    420  OE2 GLU    61      14.506  -4.676   4.029  1.00  0.00
ATOM    421  O   GLU    61       9.480  -8.917   3.291  1.00  0.00
ATOM    422  C   GLU    61       9.316  -7.743   2.961  1.00  0.00
ATOM    423  N   ALA    62       8.159  -7.105   3.113  1.00  0.00
ATOM    424  CA  ALA    62       6.991  -7.767   3.686  1.00  0.00
ATOM    425  CB  ALA    62       6.047  -6.743   4.297  1.00  0.00
ATOM    426  O   ALA    62       5.168  -9.125   2.920  1.00  0.00
ATOM    427  C   ALA    62       6.218  -8.547   2.634  1.00  0.00
ATOM    428  N   GLY    63       6.736  -8.554   1.413  1.00  0.00
ATOM    429  CA  GLY    63       6.078  -9.272   0.339  1.00  0.00
ATOM    430  O   GLY    63       4.022  -9.226  -0.876  1.00  0.00
ATOM    431  C   GLY    63       4.842  -8.588  -0.213  1.00  0.00
ATOM    432  N   VAL    64       4.691  -7.295   0.052  1.00  0.00
ATOM    433  CA  VAL    64       3.530  -6.573  -0.456  1.00  0.00
ATOM    434  CB  VAL    64       3.263  -5.291   0.356  1.00  0.00
ATOM    435  CG1 VAL    64       2.105  -4.510  -0.248  1.00  0.00
ATOM    436  CG2 VAL    64       2.911  -5.636   1.795  1.00  0.00
ATOM    437  O   VAL    64       4.829  -5.679  -2.258  1.00  0.00
ATOM    438  C   VAL    64       3.760  -6.177  -1.908  1.00  0.00
ATOM    439  N   ASP    65       2.758  -6.405  -2.748  1.00  0.00
ATOM    440  CA  ASP    65       2.867  -6.036  -4.151  1.00  0.00
ATOM    441  CB  ASP    65       1.881  -6.846  -4.995  1.00  0.00
ATOM    442  CG  ASP    65       2.000  -6.548  -6.477  1.00  0.00
ATOM    443  OD1 ASP    65       2.797  -5.656  -6.841  1.00  0.00
ATOM    444  OD2 ASP    65       1.299  -7.204  -7.274  1.00  0.00
ATOM    445  O   ASP    65       1.454  -4.105  -3.941  1.00  0.00
ATOM    446  C   ASP    65       2.550  -4.547  -4.285  1.00  0.00
ATOM    447  N   ILE    66       3.519  -3.783  -4.775  1.00  0.00
ATOM    448  CA  ILE    66       3.341  -2.347  -4.963  1.00  0.00
ATOM    449  CB  ILE    66       4.633  -1.572  -4.643  1.00  0.00
ATOM    450  CG1 ILE    66       5.050  -1.807  -3.190  1.00  0.00
ATOM    451  CG2 ILE    66       4.422  -0.080  -4.849  1.00  0.00
ATOM    452  CD1 ILE    66       6.419  -1.259  -2.851  1.00  0.00
ATOM    453  O   ILE    66       3.800  -2.227  -7.314  1.00  0.00
ATOM    454  C   ILE    66       2.962  -2.119  -6.416  1.00  0.00
ATOM    455  N   VAL    67       1.686  -1.821  -6.638  1.00  0.00
ATOM    456  CA  VAL    67       1.158  -1.605  -7.977  1.00  0.00
ATOM    457  CB  VAL    67       0.453  -2.864  -8.516  1.00  0.00
ATOM    458  CG1 VAL    67       1.439  -4.018  -8.634  1.00  0.00
ATOM    459  CG2 VAL    67      -0.671  -3.285  -7.581  1.00  0.00
ATOM    460  O   VAL    67      -0.487  -0.154  -7.002  1.00  0.00
ATOM    461  C   VAL    67       0.141  -0.469  -8.013  1.00  0.00
ATOM    462  N   GLY    68      -0.046   0.148  -9.190  1.00  0.00
ATOM    463  CA  GLY    68      -0.999   1.251  -9.342  1.00  0.00
ATOM    464  O   GLY    68      -2.827  -0.315  -9.426  1.00  0.00
ATOM    465  C   GLY    68      -2.447   0.820  -9.123  1.00  0.00
ATOM    466  N   SER    69      -3.248   1.744  -8.604  1.00  0.00
ATOM    467  CA  SER    69      -4.659   1.507  -8.317  1.00  0.00
ATOM    468  CB  SER    69      -5.375   2.827  -8.022  1.00  0.00
ATOM    469  OG  SER    69      -4.885   3.419  -6.832  1.00  0.00
ATOM    470  O   SER    69      -6.327   0.008  -9.150  1.00  0.00
ATOM    471  C   SER    69      -5.469   0.845  -9.425  1.00  0.00
ATOM    472  N   GLU    70      -5.219   1.232 -10.673  1.00  0.00
ATOM    473  CA  GLU    70      -5.981   0.686 -11.791  1.00  0.00
ATOM    474  CB  GLU    70      -5.470   1.254 -13.116  1.00  0.00
ATOM    475  CG  GLU    70      -5.639   2.757 -13.254  1.00  0.00
ATOM    476  CD  GLU    70      -5.039   3.297 -14.538  1.00  0.00
ATOM    477  OE1 GLU    70      -4.471   2.496 -15.309  1.00  0.00
ATOM    478  OE2 GLU    70      -5.138   4.519 -14.773  1.00  0.00
ATOM    479  O   GLU    70      -6.793  -1.472 -12.431  1.00  0.00
ATOM    480  C   GLU    70      -5.894  -0.829 -11.891  1.00  0.00
TER
END



