- DECOYSETS2019

Results Recalculated in 2019

Retrospective view

Targets Released
Domains

#	Target ID	Type	No. residues	Method	Description
1.	T0001	All groups	162	X-ray	Dihydrofolate reductase, Haloferax volcanii, 162a.a. Reference: Pieper, U; Kapadia, G; Mevarech, M; Herzberg, O. (1998) Structural features of halophilicity derived from the crystal structure of dihydrofolate reductase from the Dead Sea halophilic archaeon, Haloferax volcanii. Structure, 6:75-88. PDB code 1vdr
2.	T0002	All groups	514	X-ray	Threonine Deaminase, E. coli, 514a.a. Reference: Gallagher, DT; Gilliland, GL; Xiao, G; Zondlo, J; Fisher, KE; Chinchilla, D; Eisenstein, E. (1998) Structure and control of pyridoxal phosphate dependent allosteric threonine deaminase. Structure, 6:465-475. PDB code 1tdj
3.	T0003	All groups	154	X-ray	Phosphotransferase enzyme IIA domain, Mycoplasma capricolum, 154a.a. Reference: Huang, K; Kapadia, G; Zhu, PP; Peterkofsky, A; Herzberg, O. (1998) A promiscuous binding surface: crystal structure of the IIA domain of the glucose-specific permease from Mycoplasma capricolum. Structure, 6:697-710. PDB code 2gpr
4.	T0004	All groups	84	NMR	Polyribonucleotide Nucleotidyltransferase, S1 motif, E. coli, 84a.a. Reference: Bycroft,M., Hubbard,T.J., Proctor,M., Freund,S.M., Murzin,A.G. (1997) The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold. Cell 88: 235-242 PDB code 1sro
5.	T0005	All groups	268	X-ray	Gamma Fibrinogen C terminus, Human, 268a.a. Reference: Yee, V.C., Pratt, K.P., Cote, H.C., Trong, I.L., Chung, D.W., Davie, E.W., Stenkamp, R.E. and Teller, D.C. (1997) Crystal structure of a 30 kDa C-terminal fragment from the gamma chain of human fibrinogen. Structure, 5:125-38. PDB code 1fib
6.	T0006	All groups	269	X-ray	Outer Membrane Phospholipase A, Escherichia coli, 269a.a Canceled - no structure
7.	T0007	All groups	193	X-ray	Neurocalcin-delta, Bovine, 193a.a. Canceled - no structure
8.	T0008	All groups	29	X-ray	De Novo designed peptide, 29a.a. Reference: Ogihara,N.L., Weiss,M.S., Degrado,W.F., Eisenberg, D. (1997) The crystal structure of the designed trimeric coiled coil coil-V(a)L(d): Implications for engineering crystals and supramolecular assemblies. PROTEIN SCIENCE, V6 N1:80-88. PDB code 1coi
9.	T0009	All groups	109	X-ray	Cucumber Stellacyanin, Cucumis sativus, 109a.a. Reference: Hart, P.J., Nersissian, A.M., Herrmann, R.G., Nalbandyan, R.M., Valentine, J.S. and Eisenberg, D. (1996). A missing link in cupredoxins: Crystal structure of cucumber stellacyanin at 1.6 A resolution. Protein Science 5, 2175 - 2183. PDB code 1jer
10.	T0010	All groups	456	X-ray	bactericial/permeablility-increasing protein, Human, 456a.a. Reference: Beamer, L.J., Carroll, S.F. and Eisenberg, D. (1997) Crystal structure of human BPI and two bound phospholipids at 2.4 angstrom resolution. Science, 276:1861-4. PDB code 1bp1
11.	T0011	All groups	220	X-ray	Hsp-90 N-terminal domain, S.cerevisiae, 220a.a. Reference: Prodromou, C; Roe, SM; Piper, PW; Pearl, LH. (1997) A molecular clamp in the crystal structure of the N-terminal domain of the yeast Hsp90 chaperone. Nat. Struct. Biol., 4:477-482. PDB code 1ah6
12.	T0012	All groups	107	X-ray	Proregion of Procaricain, Carica papaya, 107a.a. Reference: Groves, M.R., Taylor, M.A., Scott, M., Cummings, N.J., Pickersgill, R.W. and Jenkins, J.A. (1996) The prosequence of procaricain forms an alpha-helical domain that prevents access to the substrate-binding cleft. Structure, 4:1193-203. PDB code 1pci
13.	T0013	All groups	237	X-ray	Complex of concanavalin A and methyl alpha-D-arabinofuranoside, 237a.a. Reference: Please acknowledge pre-publication information from A.J. Kalb(Gilboa), F. Frolow and R. Ventura.
14.	T0014	All groups	252	X-ray	3-Dehydroquinase, Salmonella typhi, 252a.a. Reference: Shrive A. K. ,Polikarpov I., Krell T., Coulson A., Coggins J. R., Hawkins A.R., Sawyer L. (1997) Three-dimensional structure of type I dehydroquinase - an enzyme recruited for a role in eukaryotic transcription regulation. Nat. Struct. Biol.,
15.	T0015	All groups	240	X-ray	NADPH:FMN oxidoreductase, vibrio harveyi, 240a.a. Reference: Tanner, J. J., Lei, B., Tu, S-C. and Krause, K. L. (1996) Flavin reductase P: Structure of an enzyme that reduces flavin. Biochemistry, 35, 13531-13539. PDB code 1cum
16.	T0016	All groups	312	X-ray	Peridinin Chlorophyll Protein, Amphidinium carterae, 312a.a. Reference: Hofmann, E; Wrench, PM; Sharples, FP; Hiller, RG; Welte, W; Diederichs, K. (1996) Structural basis of light harvesting by carotenoids: peridinin-chlorophyll-protein from Amphidinium carterae. Science, 272:1788-1791. PDB code 1ppr
17.	T0017	All groups	217	X-ray	Glutathione transferase, rattus liver, 217a.a. Reference: Gaoyi Xiao, Jihong Chen, Xinhua Ji, Gary L. Gilliland and Richard N. Armstrong Canceled – no structure
18.	T0018	All groups	950	X-ray	Hemagglutinin-fab complex, influenza virus, 950a.a. Reference: Fleury D., Bizebard T., Skehel J.J., Knossow M. Canceled – no structure
19.	T0019	All groups	340	X-ray	RepA1, E. coli, 340a.a. Canceled - no structure
20.	T0020	All groups	320	X-ray	Ferrochelatase, B. subtilis, 320a.a. Reference: Al-Karadaghi, S., Hansson, M., Nikonov, S., Jonsson, B., Hederstedt, L. (1997) Crystal structure of ferrochelatase: the terminal enzyme in heme biosynthesis. Structure, 5:1501-1510. PDB code 1ak1
21.	T0021	All groups	64	X-ray	KorB C-terminal domain, E. coli, 64a.a. Canceled - no structure
22.	T0022	All groups	591	X-ray	L-Fucose-Isomerase, E. coli, 591a.a. Reference: Seemann, J.E., Schulz, G.E. (1997) Structure and mechanism of L-fucose isomerase from Escherichia coli. J. Mol. Biol., 273:256-268. PDB code 1fui
23.	T0023	All groups	284	X-ray	KDO8P Synthase, E. coli, 284a.a. Canceled - no structure
24.	T0024	All groups	158	X-ray	UBC9, mouse/human, 158a.a. Reference: Tong, H., Hateboer, G., Perrakis, A., Bernards, R. and Sixma, T.K. (1997) Crystal structure of murine/human Ubc9 provides insight into the variability of the ubiquitin-conjugating system. J. Biol. Chem. 272:21381-21387. PDB code 1u9a
25.	T0025	All groups	128	X-ray	Adrenodoxin, mitochondria of bovine adrenal cortex, 128a.a. Canceled - no structure
26.	T0026	All groups	77	NMR	ArgR N-term domain, E. coli, 79a.a. Canceled - no structure
27.	T0027	All groups	359	X-ray	Pectin lyase A, Aspergillus niger, 359a.a. Reference: Mayans, O., Scott, M., Connerton, I., Gravesen, T., Benen, J., Visser, J., Pickersgill, R., Jenkins, J. (1997) Two crystal structures of pectin lyase A from Aspergillus reveal a pH driven conformational change and striking divergence in the substrate-binding clefts of pectin and pectate lyases. Structure, 5:677-689. PDB code 1idk
28.	T0028	All groups	371	X-ray	Endoglucanase I (catalytic domain), Trichoderma reesei, 371a.a. Reference: Kleywegt, GJ, Zou, J-Y, Divne, C, Davies, GJ, Sinning, I, Stahlberg, J, Reinikainen, T, Srisodsuk, M, Teeri, TT, Jones TA. (1997) The crystal structure of the catalytic core domain of endoglucanase I from Trichoderma reesei at 3.6 A resolution, and a comparison with related enzymes. J. Mol. Biol., 272:383-397. PDB code 1eg1
29.	T0029	All groups	419	X-ray	Enolpyruvyltransferase, Enterobacter cloacae, 419a.a. Canceled - no structure
30.	T0030	All groups	66	NMR	domain 1 of protein g3, filamentous phage fd, 66a.a. Reference: Holliger, P. and Riechmann, L. (1997) A conserved infection pathway for filamentous bacteriophages is suggested by the structure of the membrane penetration domain of the minor coat protein g3p from phage fd. Structure, 5:265-75. PDB code 1fgp
31.	T0031	All groups	242	X-ray	Exfoliative toxin A, S. aureus, 242a.a. Reference: Vath, G.M., Earhart, C.A., Rago, J.V., Kim, M.H., Bohach, G.A., Schlievert, P.M., and Ohlendorf, D.H. (1997) The Structure of the Superantigen Exfoliative Toxin A Suggests a Novel Regulation as a Serine Protease. Biochemistry 36, 1559-1566. PDB code 1agj
32.	T0032	All groups	98	X-ray	beta-cryptogein, fungus phytophthora cryptogea, 98a.a. Reference: Boissy, G., de La Fortelle, E., Kahn, R., Huet, J.C., Bricogne, G., Pernollet, J.C., Brunie, S. (1996) Crystal structure of a fungal elicitor secreted by Phytophthora cryptogea, a member of a novel class of plant necrotic proteins. Structure, 4:1429-39. PDB code 1beo
33.	T0033	All groups	231	X-ray	trypsin/pentamidine complex, 231a.a. Reference: Kurinov Igor V. and Harrison Robert W. (1996) unpublished
34.	T0034	All groups	231	X-ray	trypsin/amiloride complex, 231a.a. Reference: Kurinov Igor V. and Harrison Robert W. (1996) unpublished
35.	T0035	All groups	240	X-ray	pancreatic elastase/SBA complex, 240a.a.
36.	T0036	All groups	240	X-ray	pancreatic elastase/SBB complex, 240a.a.
37.	T0037	All groups	110	X-ray	calponon homology domain of beta-spectrin, Homo sapiens, 109a.a. Reference: Carugo, K.D., Banuelos, S., Saraste, M. (1997) Crystal structure of a calponin homology domain. Nature Struct. Biol., 4:175-179. PDB code 1aa2
38.	T0038	All groups	152	NMR	CBDN1, Cellulomonas fimi, 152a.a. Reference: Philip E. Johnson, Manish D. Joshi, Peter Tomme, Douglas G. Kilburn, Lawrence P. McIntosh. "Structure of the N-Terminal Cellulose-Binding Domain of Cellulomonas fimi CenC Determined by Nuclear Magnetic Resonance Spectroscopy", Biochemistry 35, 14381-14394, (1996). PDB code 1ulo
39.	T0039	All groups	335	X-ray	Fructose-1,6-Bisphosphatase, Human/Aica-Riboside Phosphate complex, 335a.a.
40.	T0040	All groups	245	X-ray	Pancreatic trypsin, Bovine/INH complex, 245a.a.
41.	T0041	All groups	245	X-ray	Pancreatic trypsin, Bovine/INI complex, 245a.a.
42.	T0042	All groups	78	NMR	NK-lysin, pig, 78a.a. Reference: Liepinsh,E., Andersson, M., Ruysschaert, J.-M. and Otting, G. (1997) Saposin fold revealed by the NMR structure of NK-lysin. Nature Struct. Biol., 4:793-795. PDB code 1nkl

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